Clone BO14146 Report

Search the DGRC for BO14146

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptYL-1-RA
Protein status:BO14146.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO14146.3prime Sequence

755 bp (627 high quality bases) assembled on 2006-05-29

> BO14146.3prime
ATGGTCTAGAAAGCTTGCGTTATCTCCGTTTTTGCTGGCAGCTGCCGAAG
CCTTCAGACGATTCTCCTTGACCAGCTTGCGCCATTCCAGCCATTTGGCC
AGTTCGGGTTGCTCGCTGCCGCCGCCTTGCTGTTCCAGCTGCATGTAGTA
GGCTTCGCGCAGAATTTTGAAGGCCTGGATGCTGTAGTATGGCTGCTGTG
TGATCGGGTCAAAGTAACGGGCTGGCAGCCTGGTGATTGGACAGATGCCA
TTGCTGGCTTTGGGAGGCGCCTTGTGGCGGAAGAGGCTTTGAAACACCTT
GTCATTGAAATCGTTCTCGATTGTAACGAATGTGCGTTCGCACTTCCCAG
CAAGATCCTTTGAATCGACCGCAGGGTTTGCTCCGCGAGTGGGCTTTCGC
ATCGCTGGCATGGTTAGTGAGTGGTAGCGTATCGTGGGTCCGGAGAACGT
GCGCTTGGTGGGACGTGATTTCTTCTTCTCCAGCTCCATTTTCTGGAATT
TCTCCAAAGATTTAGTGTTTTCTTCCTCGGTTATTTTGGCCTCCTCCCGC
AGCTCCTCCTGCGTGGGCATGTAGTCCTCCACGCGCACCTTCTTTCTTTT
TGCGCTTGCGGGCATCGTCCAACTCTTTGAAGCGTATTTTGGTAGCCTGT
GTCTTGATGGCCGTGGAAGTGCGTATGGATTTGCGGCCGGAATCGAGGAC
CGTGAAACCGGGACGTGGCCGCCGTTTCGTTACCCCCCCCCCAGGTCGTT
TCTTG

BO14146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4621-PA 1056 YL-1-RA 478..1053 594..19 2855 99.8 Minus
CG4621-PA 1056 YL-1-RA 367..479 706..594 540 99.1 Minus
CG4621-PA 1056 YL-1-RA 318..362 755..711 175 95.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 429..1164 755..19 3555 98.9 Minus
YL-1-RA 1233 CG4621-RA 429..1164 755..19 3555 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971801 504..19 2430 100 Minus
2L 23513712 2L 10971007..10971257 755..504 1105 96.8 Minus
Blast to na_te.dros performed on 2015-02-02 20:05:07 has no hits.

BO14146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:43 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-PA 318..1056 15..755 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:19 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4621-PA 318..1056 15..755 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:56:16 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 429..1167 15..755 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:13:21 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 429..1167 15..755 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:13:21 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10971007..10971257 504..755 96 -> Minus
2L 10971317..10971800 20..503 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:56:16 Download gff for BO14146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10971007..10971257 504..755 96 -> Minus
arm_2L 10971317..10971800 20..503 100 <- Minus

BO14146.5prime Sequence

628 bp (592 high quality bases) assembled on 2006-05-29

> BO14146.5prime
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCC

BO14146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4621-PA 1056 YL-1-RA 1..612 17..628 3035 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 112..723 17..628 3045 99.8 Plus
YL-1-RA 1233 CG4621-RA 112..723 17..628 3045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10970955..10971257 282..584 1515 100 Plus
2L 23513712 2L 10970748..10970881 151..284 670 100 Plus
2L 23513712 2L 10970554..10970688 17..151 660 99.3 Plus
2L 23513712 2L 10971316..10971360 584..628 225 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:01:41 has no hits.

BO14146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:44 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-PA 1..612 17..628 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:20 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4621-PA 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:43 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..723 17..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:37 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..723 17..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:37 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10970957..10971257 284..584 100 -> Plus
2L 10971317..10971360 585..628 100   Plus
2L 10970554..10970687 17..150 99 -> Plus
2L 10970748..10970880 151..283 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:43 Download gff for BO14146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10970554..10970687 17..150 99 -> Plus
arm_2L 10970748..10970880 151..283 100 -> Plus
arm_2L 10970957..10971257 284..584 100 -> Plus
arm_2L 10971317..10971360 585..628 100   Plus

BO14146.complete Sequence

1087 bp assembled on 2006-12-18

GenBank Submission: FJ633031

> BO14146.complete
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCCACCAAGCGCACGTTCTCCGGAC
CCACGATACGCTACCACTCACTAACCATGCCAGCGATGCGAAAGCCCACT
CGCGGAGCAAACCCTGCGGTCGATTCAAAGGATCTTGCTGGGAAGTGCGA
ACGCACATTCGTTACAATCGAGAACGATTTCAATGACAAGGTGTTTCAAA
GCCTCTTCCGCCACAAGGCGCCTCCCAAAGCCAGCAATGGCATCTGTCCA
ATCACCAGGCTGCCAGCCCGTTACTTTGACCCGATCACACAGCAGCCATA
CTACAGCATCCAGGCCTTCAAAATTCTGCGCGAAGCCTACTACATGCAGC
TGGAACAGCAAGGCGGCGGCAGCGAGCAACCCGAACTGGCCAAATGGCTG
GAATGGCGCAAGCTGGTCAAGGAGAATCGTCTGAAGGCTTCGGCAGCTGC
CAGCAAAAACGGAGATAACGCAAGCTTTCTAGACCAT

BO14146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1056 CG4621-PB 1..1053 17..1069 5250 99.9 Plus
YL-1-RA 1056 CG4621-PA 1..1053 17..1069 5250 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RB 1456 CG4621-RB 112..1164 17..1069 5250 99.9 Plus
YL-1-RA 1233 CG4621-RA 112..1164 17..1069 5250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971801 584..1069 2430 100 Plus
2L 23513712 2L 10970955..10971257 282..584 1515 100 Plus
2L 23513712 2L 10970748..10970881 151..284 670 100 Plus
2L 23513712 2L 10970554..10970688 17..151 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 06:41:49 has no hits.

BO14146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:42 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:05 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 100..1155 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:05 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..1164 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:43 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 100..1155 17..1073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:58 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 112..1164 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:58 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970957..10971257 284..584 100 -> Plus
2L 10970554..10970687 17..150 99 -> Plus
2L 10970748..10970880 151..283 100 -> Plus
2L 10971317..10971801 585..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:05 Download gff for BO14146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10970554..10970687 17..150 99 -> Plus
arm_2L 10970748..10970880 151..283 100 -> Plus
arm_2L 10970957..10971257 284..584 100 -> Plus
arm_2L 10971317..10971801 585..1071 99   Plus

BO14146.pep Sequence

Translation from 16 to 1087

> BO14146.pep
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
NASFLDH

BO14146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-PB 351 CG4621-PB 1..351 1..351 1818 100 Plus
YL-1-PA 351 CG4621-PA 1..351 1..351 1818 100 Plus