Clone Sequence Records
BO14146.3prime Sequence
755 bp (627 high quality bases) assembled on 2006-05-29
> BO14146.3prime
ATGGTCTAGAAAGCTTGCGTTATCTCCGTTTTTGCTGGCAGCTGCCGAAG
CCTTCAGACGATTCTCCTTGACCAGCTTGCGCCATTCCAGCCATTTGGCC
AGTTCGGGTTGCTCGCTGCCGCCGCCTTGCTGTTCCAGCTGCATGTAGTA
GGCTTCGCGCAGAATTTTGAAGGCCTGGATGCTGTAGTATGGCTGCTGTG
TGATCGGGTCAAAGTAACGGGCTGGCAGCCTGGTGATTGGACAGATGCCA
TTGCTGGCTTTGGGAGGCGCCTTGTGGCGGAAGAGGCTTTGAAACACCTT
GTCATTGAAATCGTTCTCGATTGTAACGAATGTGCGTTCGCACTTCCCAG
CAAGATCCTTTGAATCGACCGCAGGGTTTGCTCCGCGAGTGGGCTTTCGC
ATCGCTGGCATGGTTAGTGAGTGGTAGCGTATCGTGGGTCCGGAGAACGT
GCGCTTGGTGGGACGTGATTTCTTCTTCTCCAGCTCCATTTTCTGGAATT
TCTCCAAAGATTTAGTGTTTTCTTCCTCGGTTATTTTGGCCTCCTCCCGC
AGCTCCTCCTGCGTGGGCATGTAGTCCTCCACGCGCACCTTCTTTCTTTT
TGCGCTTGCGGGCATCGTCCAACTCTTTGAAGCGTATTTTGGTAGCCTGT
GTCTTGATGGCCGTGGAAGTGCGTATGGATTTGCGGCCGGAATCGAGGAC
CGTGAAACCGGGACGTGGCCGCCGTTTCGTTACCCCCCCCCCAGGTCGTT
TCTTG
BO14146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4621-PA | 1056 | YL-1-RA | 478..1053 | 594..19 | 2855 | 99.8 | Minus |
CG4621-PA | 1056 | YL-1-RA | 367..479 | 706..594 | 540 | 99.1 | Minus |
CG4621-PA | 1056 | YL-1-RA | 318..362 | 755..711 | 175 | 95.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 429..1164 | 755..19 | 3555 | 98.9 | Minus |
YL-1-RA | 1233 | CG4621-RA | 429..1164 | 755..19 | 3555 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10971316..10971801 | 504..19 | 2430 | 100 | Minus |
2L | 23513712 | 2L | 10971007..10971257 | 755..504 | 1105 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:05:07 has no hits.
BO14146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:43 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-PA | 318..1056 | 15..755 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:19 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4621-PA | 318..1056 | 15..755 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:56:16 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 429..1167 | 15..755 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:13:21 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 429..1167 | 15..755 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:13:21 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10971007..10971257 | 504..755 | 96 | -> | Minus |
2L | 10971317..10971800 | 20..503 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:56:16 Download gff for
BO14146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10971007..10971257 | 504..755 | 96 | -> | Minus |
arm_2L | 10971317..10971800 | 20..503 | 100 | <- | Minus |
BO14146.5prime Sequence
628 bp (592 high quality bases) assembled on 2006-05-29
> BO14146.5prime
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCC
BO14146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4621-PA | 1056 | YL-1-RA | 1..612 | 17..628 | 3035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 112..723 | 17..628 | 3045 | 99.8 | Plus |
YL-1-RA | 1233 | CG4621-RA | 112..723 | 17..628 | 3045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10970955..10971257 | 282..584 | 1515 | 100 | Plus |
2L | 23513712 | 2L | 10970748..10970881 | 151..284 | 670 | 100 | Plus |
2L | 23513712 | 2L | 10970554..10970688 | 17..151 | 660 | 99.3 | Plus |
2L | 23513712 | 2L | 10971316..10971360 | 584..628 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:01:41 has no hits.
BO14146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:44 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:20 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4621-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:43 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..723 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:37 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..723 | 17..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:37 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
2L | 10971317..10971360 | 585..628 | 100 | | Plus |
2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:43 Download gff for
BO14146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
arm_2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
arm_2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
arm_2L | 10971317..10971360 | 585..628 | 100 | | Plus |
BO14146.complete Sequence
1087 bp assembled on 2006-12-18
GenBank Submission: FJ633031
> BO14146.complete
GAAGTTATCAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCG
GCAACAAAATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTAC
AAAACGTCCTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGA
GCAAAAAGACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATG
AGAACGACGAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGG
AAACGCGGTGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGT
CAAAAAGGAAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTG
GTGGGGTAACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCC
GGCCGCAAATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAA
AATACGCCTCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGG
TGCGCGTGGAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCC
AAAATAACCGAGGAAGAAAACACTAAATCTTTGGAGAAATTCCAGAAAAT
GGAGCTGGAGAAGAAGAAATCACGTCCCACCAAGCGCACGTTCTCCGGAC
CCACGATACGCTACCACTCACTAACCATGCCAGCGATGCGAAAGCCCACT
CGCGGAGCAAACCCTGCGGTCGATTCAAAGGATCTTGCTGGGAAGTGCGA
ACGCACATTCGTTACAATCGAGAACGATTTCAATGACAAGGTGTTTCAAA
GCCTCTTCCGCCACAAGGCGCCTCCCAAAGCCAGCAATGGCATCTGTCCA
ATCACCAGGCTGCCAGCCCGTTACTTTGACCCGATCACACAGCAGCCATA
CTACAGCATCCAGGCCTTCAAAATTCTGCGCGAAGCCTACTACATGCAGC
TGGAACAGCAAGGCGGCGGCAGCGAGCAACCCGAACTGGCCAAATGGCTG
GAATGGCGCAAGCTGGTCAAGGAGAATCGTCTGAAGGCTTCGGCAGCTGC
CAGCAAAAACGGAGATAACGCAAGCTTTCTAGACCAT
BO14146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1056 | CG4621-PB | 1..1053 | 17..1069 | 5250 | 99.9 | Plus |
YL-1-RA | 1056 | CG4621-PA | 1..1053 | 17..1069 | 5250 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-RB | 1456 | CG4621-RB | 112..1164 | 17..1069 | 5250 | 99.9 | Plus |
YL-1-RA | 1233 | CG4621-RA | 112..1164 | 17..1069 | 5250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10971316..10971801 | 584..1069 | 2430 | 100 | Plus |
2L | 23513712 | 2L | 10970955..10971257 | 282..584 | 1515 | 100 | Plus |
2L | 23513712 | 2L | 10970748..10970881 | 151..284 | 670 | 100 | Plus |
2L | 23513712 | 2L | 10970554..10970688 | 17..151 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:49 has no hits.
BO14146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:42 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 1..1056 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:05 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 100..1155 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:05 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..1164 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:43 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 100..1155 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:58 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
YL-1-RA | 112..1164 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:58 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
2L | 10971317..10971801 | 585..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:05 Download gff for
BO14146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10970554..10970687 | 17..150 | 99 | -> | Plus |
arm_2L | 10970748..10970880 | 151..283 | 100 | -> | Plus |
arm_2L | 10970957..10971257 | 284..584 | 100 | -> | Plus |
arm_2L | 10971317..10971801 | 585..1071 | 99 | | Plus |
BO14146.pep Sequence
Translation from 16 to 1087
> BO14146.pep
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
NASFLDH
BO14146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
YL-1-PB | 351 | CG4621-PB | 1..351 | 1..351 | 1818 | 100 | Plus |
YL-1-PA | 351 | CG4621-PA | 1..351 | 1..351 | 1818 | 100 | Plus |