Clone BO14160 Report

Search the DGRC for BO14160

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1910-RC
Protein status:BO14160.pep: Imported from assembly
Sequenced Size:1432

Clone Sequence Records

BO14160.complete Sequence

1432 bp assembled on 2010-04-09

GenBank Submission: KX799182

> BO14160.complete
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAG
ACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGATGA
CGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTTTGG
AGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCTATG
GAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGACAC
ACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAAGCAGCAGCAA
AGACTACGGAGTCTAGCAATGATGTGGTGGAAGTGGCCACAGAGGGCAAA
GAAACAGTTTTAGAAGTGCCCGCTGCCGAGCCCAAGGAAGCCGAGAGCAC
TGTAGAGTCCGCGGAAGAGCTTACGGAAACCAGCACCGTGGTGGTGACTG
AGCCGAAGGAAGCCGCCAGCAGCGAAGAGGAGCCTAGCAAGGTTGTGGAC
TCTGCGGAACCCAAGGAGGCAGAGAGCAATACGGATGAGAGCGCCACGCC
CGTTCCTATTGATGTTTCTACCGCCCCCGCATCCAATGATGTCAGCAAGC
CCTTGGAAATCGATACAACCTTGGTTAAGACTGCCGACAGTCCTGCAAAG
GAACCACAGGAAATCTGCGAGGTCAAGAAGGCCGAAATTAATGTAAATGG
TGAGCCCAAGATCGTCAACAGTTCCGCCGAGGTGGGCGAGAATGCTGCGC
CCAAAGTGTGTAACGCAAGCTTTCTAGACCAT

BO14160.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 1401 CG1910-PC 1..1398 17..1414 6975 99.9 Plus
CG1910-RA 1470 CG1910-PA 82..1467 29..1414 6915 99.9 Plus
CG1910-RD 1320 CG1910-PD 1..1317 98..1414 6570 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 46..1443 17..1414 6975 99.9 Plus
CG1910-RD 2698 CG1910-RD 128..1513 29..1414 6915 99.9 Plus
CG1910-RA 3015 CG1910-RA 445..1830 29..1414 6915 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750592 341..1355 5045 99.8 Plus
3R 32079331 3R 31749204..31749522 26..344 1595 100 Plus
3R 32079331 3R 31750644..31750709 1349..1414 330 100 Plus
Blast to na_te.dros performed 2014-11-28 08:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 830..859 114 86.7 Plus

BO14160.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:20 Download gff for BO14160.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1443 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:06 Download gff for BO14160.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1443 17..1416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:49 Download gff for BO14160.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1443 17..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:49 Download gff for BO14160.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31749202..31749521 23..343 99 -> Plus
3R 31749581..31750586 344..1349 99 -> Plus
3R 31750645..31750709 1350..1416 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:06 Download gff for BO14160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27574924..27575243 23..343 99 -> Plus
arm_3R 27575303..27576308 344..1349 99 -> Plus
arm_3R 27576367..27576431 1350..1416 97   Plus

BO14160.5prime Sequence

737 bp (548 high quality bases) assembled on 2010-02-20

> BO14160.5prime
AAACGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAG
CGAGGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGC
GGCGGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCA
GTGACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCAC
AAAGGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCG
CTGATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACC
TCGGTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAA
GCAGGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATG
TAGCTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAA
CCGGATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCA
TGTCGATGAAGTCAAACCCATATCAGAAAGAACCTGGGAATTCAAGCGAA
GAAGTGCCAAAAGCTGAAAAGCCCCTCCAGTCAAGCGGAGAAACGTCCGG
AGAATGGAGCCGCTACAGAGACTGGCGCTTGCACCTAAGGAACCTGCTTC
TGTTATGGGATGTGGACGAAAATGAAACGCTTCGTCGAAAACCCACCATC
CGCAAATAAAGAAAAGGCCTTTAAATGACCGAAAAAA

BO14160.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 58..786 1..736 3325 97.4 Plus
CG1910-RD 2698 CG1910-RD 128..856 1..736 3325 97.4 Plus
CG1910-RA 3015 CG1910-RA 445..1173 1..736 3325 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31749978 313..718 1630 96.3 Plus
3R 32079331 3R 31749207..31749522 1..316 1580 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:54:37 has no hits.

BO14160.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:37 Download gff for BO14160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RD 102..825 1..731 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:54:44 Download gff for BO14160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 445..1168 1..731 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:40:08 Download gff for BO14160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 445..1168 1..731 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:40:08 Download gff for BO14160.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749207..31749521 1..315 100 -> Plus
3R 31749581..31749989 316..731 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:54:44 Download gff for BO14160.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27574929..27575243 1..315 100 -> Plus
arm_3R 27575303..27575711 316..731 95   Plus

BO14160.3prime Sequence

836 bp (599 high quality bases) assembled on 2010-02-20

> BO14160.3prime
CGCAGCATTCTCGCCCACCTCGGCGGAACTGTTGACGATCTTGGGCTCAC
CATTTACATTAATTTCGGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCC
TTTGCAGGACTGTCGGCAGTCTTAACCAAGGTTGTATCGATTTCCAAGGG
CTTGCTGACATCATTGGATGCGGGGGCGGTAGAAACATCAATAGGAACGG
GCGTGGCGCTCTCATCCGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAG
TCCACAACCTTGCTAGGCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTC
AGTCACCACCACGGTGCTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAG
TGCTCTCGGCTTCCTTGGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCT
TTGCCCTCTGTGGCCACTTCCACCACATCATTGCTAGACTCCGTAGTCTT
TGCTGCTGCTTCTGTTTCTGGAGCGGCAGAAACCGTTTTCGATGGCTGGT
GTGTTCTACTTGAGCGGTGTCCGAACTGCCCTTCGAACTTCCGTCCACTT
CCATAGGTTCTGGTGTGGGCTCCTTGGCTGGCTCATTTTGCTCCTTGGAC
TCCAAAACTGCTGGCTGCATGTTCCTCTGAATTCTGTTCTGGTTCTTTTT
CGTCATCTATGGCCTTTCTTTATTTGCGGATGGTGGGTTTTCAACAAGCG
TCTCATCTTCGTCCCATTCCCTAACAGAAGCAGGTTCTTTAAGTGCACCG
GCAGTCTCTGTAGCGGCTTCCTTTCTCGAAGTTTCTCCCCTCCAATTGAG
GGGCCCTTCACCTTTTTGGCCCCCCTCTCCTTGAAT

BO14160.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 615..1428 816..1 3640 96.9 Minus
CG1910-RD 2698 CG1910-RD 685..1498 816..1 3640 96.9 Minus
CG1910-RA 3015 CG1910-RA 1002..1815 816..1 3640 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749823..31750592 816..45 3290 96.2 Minus
3R 32079331 3R 31750644..31750694 51..1 255 100 Minus
Blast to na_te.dros performed 2015-02-11 17:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 572..543 114 86.7 Minus

BO14160.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:36 Download gff for BO14160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RD 683..1472 1..792 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 22:51:00 Download gff for BO14160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1026..1815 1..792 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:34 Download gff for BO14160.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1026..1815 1..792 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:34 Download gff for BO14160.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749847..31750586 51..792 97 -> Minus
3R 31750645..31750694 1..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 22:51:00 Download gff for BO14160.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27575569..27576308 51..792 97 -> Minus
arm_3R 27576367..27576416 1..50 100   Minus

BO14160.pep Sequence

Translation from 16 to 1432

> BO14160.pep
MEYQKRTPKRRSFIERAQKESEELVRTMGGSLELAGGRRTRSSTRGTPTR
AAEAVTPPPSKKARTSPASATKASAGKGRGARKLDVGADEPEPELEKEKE
KVQTSVKGKGAVKKDKKEVKKQEKATEKYAPEEAKEDVAEAKEEDASPAG
VQDQPDGVENLPSVAEAKQNHVDEVKPISEEPGNSSEEVPKAEEPLKSSG
ETSENGAATETAAAPKEPASVMDVDEDETLVENTPSANKEKALDDEKEPE
QKSEEHAAAVLESKEQNEPAKEPTPEPMEVDGSSKGSSDTAQVDTPAIEN
VSAAPETEAAAKTTESSNDVVEVATEGKETVLEVPAAEPKEAESTVESAE
ELTETSTVVVTEPKEAASSEEEPSKVVDSAEPKEAESNTDESATPVPIDV
STAPASNDVSKPLEIDTTLVKTADSPAKEPQEICEVKKAEINVNGEPKIV
NSSAEVGENAAPKVCNASFLDH

BO14160.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PC 466 CG1910-PC 1..466 1..466 2320 100 Plus
CG1910-PA 489 CG1910-PA 28..489 5..466 2298 100 Plus
CG1910-PD 439 CG1910-PD 1..439 28..466 2186 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4783..5217 8..435 206 23 Plus
Strn-Mlck-PV 7944 CG44162-PV 4822..5256 8..435 206 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3960..4325 50..440 191 23.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4133..4585 8..440 184 22.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4311..4715 15..440 178 22.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 4740..5143 50..440 178 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3505..3935 50..440 176 23.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4571..4964 61..455 173 21.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3743..4192 8..463 172 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4701..5107 61..440 164 23.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4913..5262 8..374 164 24.1 Plus