Clone Sequence Records
BO14160.complete Sequence
1432 bp assembled on 2010-04-09
GenBank Submission: KX799182
> BO14160.complete
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAG
ACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGATGA
CGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTTTGG
AGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCTATG
GAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGACAC
ACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAAGCAGCAGCAA
AGACTACGGAGTCTAGCAATGATGTGGTGGAAGTGGCCACAGAGGGCAAA
GAAACAGTTTTAGAAGTGCCCGCTGCCGAGCCCAAGGAAGCCGAGAGCAC
TGTAGAGTCCGCGGAAGAGCTTACGGAAACCAGCACCGTGGTGGTGACTG
AGCCGAAGGAAGCCGCCAGCAGCGAAGAGGAGCCTAGCAAGGTTGTGGAC
TCTGCGGAACCCAAGGAGGCAGAGAGCAATACGGATGAGAGCGCCACGCC
CGTTCCTATTGATGTTTCTACCGCCCCCGCATCCAATGATGTCAGCAAGC
CCTTGGAAATCGATACAACCTTGGTTAAGACTGCCGACAGTCCTGCAAAG
GAACCACAGGAAATCTGCGAGGTCAAGAAGGCCGAAATTAATGTAAATGG
TGAGCCCAAGATCGTCAACAGTTCCGCCGAGGTGGGCGAGAATGCTGCGC
CCAAAGTGTGTAACGCAAGCTTTCTAGACCAT
BO14160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 1401 | CG1910-PC | 1..1398 | 17..1414 | 6975 | 99.9 | Plus |
CG1910-RA | 1470 | CG1910-PA | 82..1467 | 29..1414 | 6915 | 99.9 | Plus |
CG1910-RD | 1320 | CG1910-PD | 1..1317 | 98..1414 | 6570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 46..1443 | 17..1414 | 6975 | 99.9 | Plus |
CG1910-RD | 2698 | CG1910-RD | 128..1513 | 29..1414 | 6915 | 99.9 | Plus |
CG1910-RA | 3015 | CG1910-RA | 445..1830 | 29..1414 | 6915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750592 | 341..1355 | 5045 | 99.8 | Plus |
3R | 32079331 | 3R | 31749204..31749522 | 26..344 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 31750644..31750709 | 1349..1414 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 830..859 | 114 | 86.7 | Plus |
BO14160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:20 Download gff for
BO14160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1443 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:06 Download gff for
BO14160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1443 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:49 Download gff for
BO14160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1443 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:49 Download gff for
BO14160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749202..31749521 | 23..343 | 99 | -> | Plus |
3R | 31749581..31750586 | 344..1349 | 99 | -> | Plus |
3R | 31750645..31750709 | 1350..1416 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:06 Download gff for
BO14160.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27574924..27575243 | 23..343 | 99 | -> | Plus |
arm_3R | 27575303..27576308 | 344..1349 | 99 | -> | Plus |
arm_3R | 27576367..27576431 | 1350..1416 | 97 | | Plus |
BO14160.5prime Sequence
737 bp (548 high quality bases) assembled on 2010-02-20
> BO14160.5prime
AAACGCACTCCCAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAG
CGAGGAGCTTGTGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGC
GGCGGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCA
GTGACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCAC
AAAGGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCG
CTGATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACC
TCGGTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAA
GCAGGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATG
TAGCTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAA
CCGGATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCA
TGTCGATGAAGTCAAACCCATATCAGAAAGAACCTGGGAATTCAAGCGAA
GAAGTGCCAAAAGCTGAAAAGCCCCTCCAGTCAAGCGGAGAAACGTCCGG
AGAATGGAGCCGCTACAGAGACTGGCGCTTGCACCTAAGGAACCTGCTTC
TGTTATGGGATGTGGACGAAAATGAAACGCTTCGTCGAAAACCCACCATC
CGCAAATAAAGAAAAGGCCTTTAAATGACCGAAAAAA
BO14160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 58..786 | 1..736 | 3325 | 97.4 | Plus |
CG1910-RD | 2698 | CG1910-RD | 128..856 | 1..736 | 3325 | 97.4 | Plus |
CG1910-RA | 3015 | CG1910-RA | 445..1173 | 1..736 | 3325 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31749978 | 313..718 | 1630 | 96.3 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 1..316 | 1580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:54:37 has no hits.
BO14160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:37 Download gff for
BO14160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RD | 102..825 | 1..731 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:54:44 Download gff for
BO14160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 445..1168 | 1..731 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:40:08 Download gff for
BO14160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 445..1168 | 1..731 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:40:08 Download gff for
BO14160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749207..31749521 | 1..315 | 100 | -> | Plus |
3R | 31749581..31749989 | 316..731 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:54:44 Download gff for
BO14160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27574929..27575243 | 1..315 | 100 | -> | Plus |
arm_3R | 27575303..27575711 | 316..731 | 95 | | Plus |
BO14160.3prime Sequence
836 bp (599 high quality bases) assembled on 2010-02-20
> BO14160.3prime
CGCAGCATTCTCGCCCACCTCGGCGGAACTGTTGACGATCTTGGGCTCAC
CATTTACATTAATTTCGGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCC
TTTGCAGGACTGTCGGCAGTCTTAACCAAGGTTGTATCGATTTCCAAGGG
CTTGCTGACATCATTGGATGCGGGGGCGGTAGAAACATCAATAGGAACGG
GCGTGGCGCTCTCATCCGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAG
TCCACAACCTTGCTAGGCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTC
AGTCACCACCACGGTGCTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAG
TGCTCTCGGCTTCCTTGGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCT
TTGCCCTCTGTGGCCACTTCCACCACATCATTGCTAGACTCCGTAGTCTT
TGCTGCTGCTTCTGTTTCTGGAGCGGCAGAAACCGTTTTCGATGGCTGGT
GTGTTCTACTTGAGCGGTGTCCGAACTGCCCTTCGAACTTCCGTCCACTT
CCATAGGTTCTGGTGTGGGCTCCTTGGCTGGCTCATTTTGCTCCTTGGAC
TCCAAAACTGCTGGCTGCATGTTCCTCTGAATTCTGTTCTGGTTCTTTTT
CGTCATCTATGGCCTTTCTTTATTTGCGGATGGTGGGTTTTCAACAAGCG
TCTCATCTTCGTCCCATTCCCTAACAGAAGCAGGTTCTTTAAGTGCACCG
GCAGTCTCTGTAGCGGCTTCCTTTCTCGAAGTTTCTCCCCTCCAATTGAG
GGGCCCTTCACCTTTTTGGCCCCCCTCTCCTTGAAT
BO14160.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 615..1428 | 816..1 | 3640 | 96.9 | Minus |
CG1910-RD | 2698 | CG1910-RD | 685..1498 | 816..1 | 3640 | 96.9 | Minus |
CG1910-RA | 3015 | CG1910-RA | 1002..1815 | 816..1 | 3640 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749823..31750592 | 816..45 | 3290 | 96.2 | Minus |
3R | 32079331 | 3R | 31750644..31750694 | 51..1 | 255 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 572..543 | 114 | 86.7 | Minus |
BO14160.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:36 Download gff for
BO14160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RD | 683..1472 | 1..792 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 22:51:00 Download gff for
BO14160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1026..1815 | 1..792 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:34 Download gff for
BO14160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1026..1815 | 1..792 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:34 Download gff for
BO14160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749847..31750586 | 51..792 | 97 | -> | Minus |
3R | 31750645..31750694 | 1..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 22:51:00 Download gff for
BO14160.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27575569..27576308 | 51..792 | 97 | -> | Minus |
arm_3R | 27576367..27576416 | 1..50 | 100 | | Minus |
BO14160.pep Sequence
Translation from 16 to 1432
> BO14160.pep
MEYQKRTPKRRSFIERAQKESEELVRTMGGSLELAGGRRTRSSTRGTPTR
AAEAVTPPPSKKARTSPASATKASAGKGRGARKLDVGADEPEPELEKEKE
KVQTSVKGKGAVKKDKKEVKKQEKATEKYAPEEAKEDVAEAKEEDASPAG
VQDQPDGVENLPSVAEAKQNHVDEVKPISEEPGNSSEEVPKAEEPLKSSG
ETSENGAATETAAAPKEPASVMDVDEDETLVENTPSANKEKALDDEKEPE
QKSEEHAAAVLESKEQNEPAKEPTPEPMEVDGSSKGSSDTAQVDTPAIEN
VSAAPETEAAAKTTESSNDVVEVATEGKETVLEVPAAEPKEAESTVESAE
ELTETSTVVVTEPKEAASSEEEPSKVVDSAEPKEAESNTDESATPVPIDV
STAPASNDVSKPLEIDTTLVKTADSPAKEPQEICEVKKAEINVNGEPKIV
NSSAEVGENAAPKVCNASFLDH
BO14160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PC | 466 | CG1910-PC | 1..466 | 1..466 | 2320 | 100 | Plus |
CG1910-PA | 489 | CG1910-PA | 28..489 | 5..466 | 2298 | 100 | Plus |
CG1910-PD | 439 | CG1910-PD | 1..439 | 28..466 | 2186 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4783..5217 | 8..435 | 206 | 23 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4822..5256 | 8..435 | 206 | 23 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3960..4325 | 50..440 | 191 | 23.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4133..4585 | 8..440 | 184 | 22.8 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4311..4715 | 15..440 | 178 | 22.2 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4740..5143 | 50..440 | 178 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3505..3935 | 50..440 | 176 | 23.1 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4571..4964 | 61..455 | 173 | 21.6 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3743..4192 | 8..463 | 172 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4701..5107 | 61..440 | 164 | 23.3 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4913..5262 | 8..374 | 164 | 24.1 | Plus |