Clone BO14173 Report

Search the DGRC for BO14173

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG12134-RB
Protein status:BO14173.pep: full length peptide match
Sequenced Size:1057

Clone Sequence Records

BO14173.3prime Sequence

730 bp (637 high quality bases) assembled on 2006-05-29

> BO14173.3prime
ATGGTCTAGAAAGCTTGCATATGGCGCTTGCTTGCGTGATTTCTTCTCCT
TCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTGT
GCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTCT
CTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAAT
TGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAGG
ATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGTC
TTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTCC
TTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCCC
TCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATAT
GATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTGC
TCTCCGTGTTGAAGGTGTTAAGCAGTGCTTCATCCTCGTCCGGCTCCTTC
ACATCGAACACGTTTACTAGCCCGTCCACACTGCCCGTGGCCAGAAGGTC
TGGATTCTGGGCATGGAACCGCAACGAGGTGATATCGTCCTCATGGCTTT
TCGAAGTAGACGCCCATTTGCTGGCGCTCCCGAACATCGAAGAACACCAG
GAACGCGTTGCTGTGAAACTGTTCGGTGCC

BO14173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 602..1233 650..19 3160 100 Minus
CG12134-PB 1026 CG12134-RB 392..1023 650..19 3160 100 Minus
CG12134-PA 1236 CG12134-RA 523..604 730..649 385 98.7 Minus
CG12134-PB 1026 CG12134-RB 313..394 730..649 385 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 829..1539 730..19 3520 99.7 Minus
CG12134-RA 1526 CG12134-RA 774..1484 730..19 3520 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971971..9972443 730..257 2305 99.6 Minus
2R 25286936 2R 9972500..9972738 257..19 1195 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:50 has no hits.

BO14173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:22 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 523..1236 15..730 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:12 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 313..1026 15..730 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:20 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 774..1487 15..730 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:13 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 774..1487 15..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:13 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971971..9972443 257..730 99 -> Minus
2R 9972501..9972741 15..256 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:20 Download gff for BO14173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859476..5859948 257..730 99 -> Minus
arm_2R 5860006..5860246 15..256 99   Minus

BO14173.5prime Sequence

754 bp (662 high quality bases) assembled on 2006-05-29

> BO14173.5prime
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTTCAACCTGATAAATGCCCACA
ATCA

BO14173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 211..923 17..729 3565 100 Plus
CG12134-PB 1026 CG12134-RB 1..713 17..729 3565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 517..1253 17..754 3665 99.9 Plus
CG12134-RA 1526 CG12134-RA 462..1198 17..754 3665 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971659..9972395 17..754 3640 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:53:48 has no hits.

BO14173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:23 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 205..946 8..753 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:14 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 1..736 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:20 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 456..1197 8..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:54 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 456..1197 8..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:54 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971653..9972394 8..753 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:20 Download gff for BO14173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859158..5859899 8..753 99   Plus

BO14173.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ633034

> BO14173.complete
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAA
TCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGG
GCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTCCAGCCA
TTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGA
TTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTGTTACGG
TTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAG
GCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATGCAAGCTTTCT
AGACCAT

BO14173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1026 CG12134-PB 1..1023 17..1039 5115 100 Plus
CG12134-RA 1236 CG12134-PA 211..1233 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 517..1539 17..1039 5115 100 Plus
CG12134-RA 1526 CG12134-RA 462..1484 17..1039 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971659..9972443 17..801 3925 100 Plus
2R 25286936 2R 9972500..9972738 801..1039 1195 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:22:56 has no hits.

BO14173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:30 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 1..1026 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:35 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 317..1348 8..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:31 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 462..1484 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:31 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 317..1348 8..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:11 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 462..1484 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:11 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971659..9972443 17..801 100 -> Plus
2R 9972501..9972738 802..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:31 Download gff for BO14173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859164..5859948 17..801 100 -> Plus
arm_2R 5860006..5860243 802..1041 99   Plus

BO14173.pep Sequence

Translation from 16 to 1057

> BO14173.pep
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPYASFLDH

BO14173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PB 341 CG12134-PB 1..341 1..341 1778 100 Plus
CG12134-PA 411 CG12134-PA 71..411 1..341 1778 100 Plus