Clone Sequence Records
BO14173.3prime Sequence
730 bp (637 high quality bases) assembled on 2006-05-29
> BO14173.3prime
ATGGTCTAGAAAGCTTGCATATGGCGCTTGCTTGCGTGATTTCTTCTCCT
TCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTGT
GCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTCT
CTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAAT
TGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAGG
ATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGTC
TTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTCC
TTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCCC
TCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATAT
GATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTGC
TCTCCGTGTTGAAGGTGTTAAGCAGTGCTTCATCCTCGTCCGGCTCCTTC
ACATCGAACACGTTTACTAGCCCGTCCACACTGCCCGTGGCCAGAAGGTC
TGGATTCTGGGCATGGAACCGCAACGAGGTGATATCGTCCTCATGGCTTT
TCGAAGTAGACGCCCATTTGCTGGCGCTCCCGAACATCGAAGAACACCAG
GAACGCGTTGCTGTGAAACTGTTCGGTGCC
BO14173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 602..1233 | 650..19 | 3160 | 100 | Minus |
CG12134-PB | 1026 | CG12134-RB | 392..1023 | 650..19 | 3160 | 100 | Minus |
CG12134-PA | 1236 | CG12134-RA | 523..604 | 730..649 | 385 | 98.7 | Minus |
CG12134-PB | 1026 | CG12134-RB | 313..394 | 730..649 | 385 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 829..1539 | 730..19 | 3520 | 99.7 | Minus |
CG12134-RA | 1526 | CG12134-RA | 774..1484 | 730..19 | 3520 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971971..9972443 | 730..257 | 2305 | 99.6 | Minus |
2R | 25286936 | 2R | 9972500..9972738 | 257..19 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:50 has no hits.
BO14173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:22 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PA | 523..1236 | 15..730 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:12 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PB | 313..1026 | 15..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:20 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 774..1487 | 15..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:13 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 774..1487 | 15..730 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:13 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971971..9972443 | 257..730 | 99 | -> | Minus |
2R | 9972501..9972741 | 15..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:20 Download gff for
BO14173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859476..5859948 | 257..730 | 99 | -> | Minus |
arm_2R | 5860006..5860246 | 15..256 | 99 | | Minus |
BO14173.5prime Sequence
754 bp (662 high quality bases) assembled on 2006-05-29
> BO14173.5prime
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTTCAACCTGATAAATGCCCACA
ATCA
BO14173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 211..923 | 17..729 | 3565 | 100 | Plus |
CG12134-PB | 1026 | CG12134-RB | 1..713 | 17..729 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 517..1253 | 17..754 | 3665 | 99.9 | Plus |
CG12134-RA | 1526 | CG12134-RA | 462..1198 | 17..754 | 3665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971659..9972395 | 17..754 | 3640 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:53:48 has no hits.
BO14173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:23 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PA | 205..946 | 8..753 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:14 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PB | 1..736 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:20 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 456..1197 | 8..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:54 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 456..1197 | 8..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:54 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971653..9972394 | 8..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:20 Download gff for
BO14173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859158..5859899 | 8..753 | 99 | | Plus |
BO14173.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ633034
> BO14173.complete
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAA
TCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGG
GCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTCCAGCCA
TTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGA
TTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTGTTACGG
TTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAG
GCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATGCAAGCTTTCT
AGACCAT
BO14173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1026 | CG12134-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG12134-RA | 1236 | CG12134-PA | 211..1233 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 517..1539 | 17..1039 | 5115 | 100 | Plus |
CG12134-RA | 1526 | CG12134-RA | 462..1484 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971659..9972443 | 17..801 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 9972500..9972738 | 801..1039 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:56 has no hits.
BO14173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:30 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:35 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 317..1348 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:31 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 462..1484 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:31 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 317..1348 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:11 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 462..1484 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:11 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971659..9972443 | 17..801 | 100 | -> | Plus |
2R | 9972501..9972738 | 802..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:31 Download gff for
BO14173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859164..5859948 | 17..801 | 100 | -> | Plus |
arm_2R | 5860006..5860243 | 802..1041 | 99 | | Plus |
BO14173.pep Sequence
Translation from 16 to 1057
> BO14173.pep
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPYASFLDH
BO14173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PB | 341 | CG12134-PB | 1..341 | 1..341 | 1778 | 100 | Plus |
CG12134-PA | 411 | CG12134-PA | 71..411 | 1..341 | 1778 | 100 | Plus |