Clone Sequence Records
BO14174.complete Sequence
970 bp assembled on 2010-07-02
GenBank Submission: KX799434
> BO14174.complete
GAAGTTATCAGTCGACATGTCAGATTCGACTATTTTCCGTTTTTCAGCGG
ACAGCAACGTATCCAGTTCGAGCTCCAATTCCAGTGTATCCGACTCTTCT
GTGGACTCCCATTCATCCATAGAATCCAATTCGGGACACAATACATCCGT
GGAATCTCAGTCATCCGCGGAATCTGATTCATCCGCTGATTCCCATTCGT
CCTTGGAACGCCCATCCCCAGTGGAGCGTGATTTATCTGTGGAATCAGAC
TCATCTTCAGCCACCAATACCAGCGAATCTTCAGTCGGAGAAGCTTCAAA
CCAACTGCAGTCACCGCAAAGCAATAACCCCTTAAATATGGCTAACTTGT
CTGTCTCGACTGAAGATGCTCATTCGCAGATCAGATCACTTACCCAGGAT
GTGATCCAGATGGAAGCAGAGTTGGATCGCATGAATCGCTACTGCGAGGA
AGTTGTGGCACAGATTGACACCTTCGCCACGAGAACCTCAACGCCAACAA
CTCGTAGAATTCGCCGCAGAACGAGTCCAGTAGAAGTGATAGATCTGTCC
CATTTGGACCGTGCACCACCTGTTCGATCCGCTCGGAATCGTGATCCCGA
TGCTTTCATCGATCTATGCACCCCCGAAGGCCCAAGAAGTCGCACAGTGA
ATCTTCACTCCAACGACTCCCTCACCATTCTGCCACGTCGGTCAGCCGAA
AATGACCCGGTAGTGGATCTCGACGTTGCGTCGCCACCAAAACGCGTTAA
TCGCGACATTGATGAGTCCCAAAAAGAGGAGTTATACAAGTGCCCCATCT
GCATGGACAGTGTATCGAAGCGCGAGCCAGTGTCAACCAAATGTGGACAC
GTCTTCTGCCGCGAATGCATCGAAACAGCCATCAGAGCTACGCACAAGTG
CCCAATATGCAACAAGAAGCTGACCGCACGTCAATTCTTTCGCATTTACT
TGGCAAGCTTTCTAGACCAT
BO14174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RB | 939 | CG10981-PB | 1..936 | 17..952 | 4680 | 100 | Plus |
dgrn-RA | 960 | CG10981-PA | 49..957 | 44..952 | 4545 | 100 | Plus |
dgrn-RD | 618 | CG10981-PD | 1..615 | 338..952 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RB | 1611 | CG10981-RB | 335..1270 | 17..952 | 4680 | 100 | Plus |
dgrn-RA | 1632 | CG10981-RA | 383..1291 | 44..952 | 4545 | 100 | Plus |
dgrn-RD | 1635 | CG10981-RD | 386..1294 | 44..952 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825805..5826235 | 522..952 | 2155 | 100 | Plus |
3R | 32079331 | 3R | 5825057..5825444 | 44..431 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 432..521 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:31 has no hits.
BO14174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:07 Download gff for
BO14174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RB | 345..1280 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:49 Download gff for
BO14174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RB | 345..1280 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:53 Download gff for
BO14174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RB | 335..1270 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:53 Download gff for
BO14174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824949..5824975 | 17..43 | 100 | -> | Plus |
3R | 5825057..5825444 | 44..431 | 100 | -> | Plus |
3R | 5825499..5825588 | 432..521 | 100 | -> | Plus |
3R | 5825805..5826235 | 522..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:49 Download gff for
BO14174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650671..1650697 | 17..43 | 100 | -> | Plus |
arm_3R | 1650779..1651166 | 44..431 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 432..521 | 100 | -> | Plus |
arm_3R | 1651527..1651957 | 522..954 | 99 | | Plus |
BO14174.5prime Sequence
779 bp (550 high quality bases) assembled on 2010-02-20
> BO14174.5prime
TATCCAGTTCGAGCTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTCC
CATTCATCCATAGAATCCAATTCGGGACACAATACATCCGTGGAATCTCA
GTCATCCGCGGAATCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAAC
GCCCATCCCCAGTGGAGCGTGATTTATCTGTGGAATCAGACTCATCTTCA
GCCACCAATACCAGCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGCA
GTCACCGCAAAGCAATAACCCCTTAAATATGGCTAACTTGTCTGTCTCGA
CTGAAGATGCTCATTCGCAGATCAGATCACTTACCCAGGATGTGATCCAG
ATGGAAGCAGAGTTGGATCGCATGAATCGCTACTGCGAGGAAGTTGTGGC
ACAGATTGACACCTTCGCCACGAGAACCTCAACGCCAACAACTCGTAGAA
TTCGCCGCACAACGAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGAA
CGTGCACCACCTGTTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCAT
CGATCTATGCACCCCCGAAGGCCCAAGAAGTTCCACAGTGAATCTTTCCT
CCAACGACTCCCTCACCATTCTGCCCCGTCGGTCCAGCCGAAAATGAACC
CGGTAGTGGATCTCGACGTTGCGTCCCCCCCAAACGCGTTTAATCGCCAC
TTTGATGAATCCCAAAAAAAGGAGTTATACCAGTGCCCCATCTGCTTGGG
AAGTGGACCGAAGCGGCAGCCCGTGGCAA
BO14174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RB | 1611 | CG10981-RB | 378..1154 | 1..779 | 3455 | 96.5 | Plus |
dgrn-RA | 1632 | CG10981-RA | 399..1175 | 1..779 | 3455 | 96.5 | Plus |
dgrn-RD | 1635 | CG10981-RD | 402..1178 | 1..779 | 3455 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 01:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825073..5825444 | 1..372 | 1860 | 100 | Plus |
3R | 32079331 | 3R | 5825805..5826119 | 463..779 | 1080 | 90.9 | Plus |
3R | 32079331 | 3R | 5825499..5825585 | 373..459 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 01:56:12 has no hits.
BO14174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:40 Download gff for
BO14174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RB | 388..1150 | 1..765 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:00:06 Download gff for
BO14174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 409..1171 | 1..765 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:56:59 Download gff for
BO14174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RD | 402..1164 | 1..765 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 03:56:59 Download gff for
BO14174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5825073..5825444 | 1..372 | 100 | -> | Plus |
3R | 5825499..5825588 | 373..462 | 98 | -> | Plus |
3R | 5825805..5826105 | 463..765 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:00:06 Download gff for
BO14174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650795..1651166 | 1..372 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 373..462 | 98 | -> | Plus |
arm_3R | 1651527..1651827 | 463..765 | 92 | | Plus |
BO14174.pep Sequence
Translation from 16 to 970
> BO14174.pep
MSDSTIFRFSADSNVSSSSSNSSVSDSSVDSHSSIESNSGHNTSVESQSS
AESDSSADSHSSLERPSPVERDLSVESDSSSATNTSESSVGEASNQLQSP
QSNNPLNMANLSVSTEDAHSQIRSLTQDVIQMEAELDRMNRYCEEVVAQI
DTFATRTSTPTTRRIRRRTSPVEVIDLSHLDRAPPVRSARNRDPDAFIDL
CTPEGPRSRTVNLHSNDSLTILPRRSAENDPVVDLDVASPPKRVNRDIDE
SQKEELYKCPICMDSVSKREPVSTKCGHVFCRECIETAIRATHKCPICNK
KLTARQFFRIYLASFLDH
BO14174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-PB | 312 | CG10981-PB | 1..312 | 1..312 | 1584 | 100 | Plus |
dgrn-PA | 319 | CG10981-PA | 1..319 | 1..312 | 1566 | 97.8 | Plus |
dgrn-PD | 205 | CG10981-PD | 1..205 | 108..312 | 1070 | 100 | Plus |
CG43058-PA | 100 | CG43058-PA | 10..100 | 187..312 | 214 | 35.7 | Plus |
elfless-PC | 229 | CG15150-PC | 42..229 | 149..312 | 183 | 30.7 | Plus |