Clone Sequence Records
BO14179.3prime Sequence
531 bp (472 high quality bases) assembled on 2006-05-29
> BO14179.3prime
ATGGTCTAGAAAGCTTGCGACATCGACTACCATCTTCTTGTGAATGTCCG
TGTTGCCGACCACAGAGCAGAACTCATCGAACGAGATCTTGCCATCCTCA
TCCTTATCCGCGAATCCGATCGTCTTGTCCACAATCTGCTGCAGTTGCGT
GTCCTTCAGATTATTGCCTACCATCATCTTTAAAACCTGAAACAGTTCGC
CATTGGAAATGTAACCATCGTTGTCCATGTCATAGATGCGAAAGGCGAAG
CGCAACTTGGACAGCTTGTCGCCCTTGACGCTGAACTGCGACACGCCCTG
GATGAACTCCTTGAAGTCCACCTCGCCGTTGCCGTCCGCGTCGAAAATGT
CGATCACGCGCTGCACCCGCGGATTCTGTTGCAGCTCCGGCAGCGACATG
AACTCGTCCACGCTCAGCGCGCCCGAATTGTCCCGGTCCAGTTTTCCGGA
AACGTTTGCCCAGCCGCCGGATCTCGTCGGCGTCGAAATTGGAACACATT
TCCATGGGCAGTGATGTTTCATTTCCCATGT
BO14179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11217-PA | 513 | CanB2-RA | 85..510 | 444..19 | 2080 | 99.5 | Minus |
CG11217-PA | 513 | CanB2-RA | 1..87 | 529..443 | 435 | 100 | Minus |
CG4209-PA | 513 | CanB-RA | 124..251 | 405..278 | 265 | 88.2 | Minus |
CG4209-PA | 513 | CanB-RA | 418..509 | 111..20 | 185 | 88 | Minus |
CG4209-PA | 513 | CanB-RA | 349..407 | 180..122 | 170 | 91.5 | Minus |
CG4209-PA | 513 | CanB-RA | 256..320 | 273..209 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 257..766 | 529..19 | 2500 | 99.4 | Minus |
CanB2-RA | 1143 | CG11217-RA | 257..766 | 529..19 | 2500 | 99.4 | Minus |
CanB-RB | 1148 | CG4209-RB | 103..612 | 530..20 | 1360 | 84.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 486..186 | 1425 | 99 | Minus |
X | 23542271 | X | 5333404..5333913 | 530..20 | 1335 | 84.5 | Minus |
2R | 25286936 | 2R | 7787589..7787758 | 188..19 | 850 | 100 | Minus |
2R | 25286936 | 2R | 7786499..7786539 | 527..487 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:25:28 has no hits.
BO14179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:31 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-PA | 1..513 | 15..529 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:25 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11217-PA | 1..513 | 15..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:20 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..769 | 15..531 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:29 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..769 | 15..531 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:29 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7786496..7786539 | 487..531 | 95 | -> | Minus |
2R | 7787234..7787532 | 187..486 | 99 | -> | Minus |
2R | 7787591..7787761 | 15..186 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:20 Download gff for
BO14179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3674001..3674044 | 487..531 | 95 | -> | Minus |
arm_2R | 3674739..3675037 | 187..486 | 99 | -> | Minus |
arm_2R | 3675096..3675266 | 15..186 | 98 | | Minus |
BO14179.5prime Sequence
542 bp (537 high quality bases) assembled on 2006-05-29
> BO14179.5prime
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAGACC
BO14179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11217-PA | 513 | CanB2-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
CG4209-PA | 513 | CanB-RA | 19..251 | 35..267 | 415 | 87.1 | Plus |
CG4209-PA | 513 | CanB-RA | 418..509 | 434..525 | 185 | 88 | Plus |
CG4209-PA | 513 | CanB-RA | 349..407 | 365..423 | 170 | 91.5 | Plus |
CG4209-PA | 513 | CanB-RA | 256..320 | 272..336 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 257..766 | 17..526 | 2550 | 100 | Plus |
CanB2-RA | 1143 | CG11217-RA | 257..766 | 17..526 | 2550 | 100 | Plus |
CanB-RB | 1148 | CG4209-RB | 103..612 | 16..525 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 1500 | 100 | Plus |
X | 23542271 | X | 5333404..5333913 | 16..525 | 1410 | 85.1 | Plus |
2R | 25286936 | 2R | 7787589..7787758 | 357..526 | 850 | 100 | Plus |
2R | 25286936 | 2R | 7786499..7786539 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:44:49 has no hits.
BO14179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:32 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:27 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11217-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:19 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..769 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:56 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..769 | 17..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:56 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7787234..7787532 | 60..358 | 100 | -> | Plus |
2R | 7787591..7787761 | 359..530 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:19 Download gff for
BO14179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3675096..3675266 | 359..530 | 98 | | Plus |
arm_2R | 3674739..3675037 | 60..358 | 100 | -> | Plus |
BO14179.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ633035
> BO14179.complete
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAGACCAT
BO14179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 513 | CG11217-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CanB2-RA | 513 | CG11217-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
CanB-RB | 513 | CG4209-PB | 1..509 | 17..525 | 1405 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 257..766 | 17..526 | 2550 | 100 | Plus |
CanB2-RA | 1143 | CG11217-RA | 257..766 | 17..526 | 2550 | 100 | Plus |
CanB-RB | 1148 | CG4209-RB | 103..612 | 16..525 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 1500 | 100 | Plus |
X | 23542271 | X | 5333404..5333913 | 16..525 | 1410 | 85.1 | Plus |
2R | 25286936 | 2R | 7787589..7787758 | 357..526 | 850 | 100 | Plus |
2R | 25286936 | 2R | 7786499..7786539 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:43 has no hits.
BO14179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:32 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:36 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..767 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:37 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..766 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:32 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..767 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:42 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..766 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:42 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7786498..7786539 | 17..59 | 97 | -> | Plus |
2R | 7787234..7787532 | 60..358 | 100 | -> | Plus |
2R | 7787591..7787758 | 359..528 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:37 Download gff for
BO14179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3674003..3674044 | 17..59 | 97 | -> | Plus |
arm_2R | 3674739..3675037 | 60..358 | 100 | -> | Plus |
arm_2R | 3675096..3675263 | 359..528 | 98 | | Plus |
BO14179.pep Sequence
Translation from 16 to 544
> BO14179.pep
MGNETSLPMEMCSNFDADEIRRLGKRFRKLDLDNSGALSVDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDVASFLDH
BO14179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-PB | 170 | CG11217-PB | 1..170 | 1..170 | 874 | 100 | Plus |
CanB2-PA | 170 | CG11217-PA | 1..170 | 1..170 | 874 | 100 | Plus |
CanB-PB | 170 | CG4209-PB | 1..170 | 1..170 | 858 | 97.6 | Plus |
CanB-PA | 170 | CG4209-PA | 1..170 | 1..170 | 858 | 97.6 | Plus |
elm-PB | 189 | CG2185-PB | 1..185 | 1..168 | 308 | 38.9 | Plus |