Clone BO14179 Report

Search the DGRC for BO14179

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCanB2-RA
Protein status:BO14179.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO14179.3prime Sequence

531 bp (472 high quality bases) assembled on 2006-05-29

> BO14179.3prime
ATGGTCTAGAAAGCTTGCGACATCGACTACCATCTTCTTGTGAATGTCCG
TGTTGCCGACCACAGAGCAGAACTCATCGAACGAGATCTTGCCATCCTCA
TCCTTATCCGCGAATCCGATCGTCTTGTCCACAATCTGCTGCAGTTGCGT
GTCCTTCAGATTATTGCCTACCATCATCTTTAAAACCTGAAACAGTTCGC
CATTGGAAATGTAACCATCGTTGTCCATGTCATAGATGCGAAAGGCGAAG
CGCAACTTGGACAGCTTGTCGCCCTTGACGCTGAACTGCGACACGCCCTG
GATGAACTCCTTGAAGTCCACCTCGCCGTTGCCGTCCGCGTCGAAAATGT
CGATCACGCGCTGCACCCGCGGATTCTGTTGCAGCTCCGGCAGCGACATG
AACTCGTCCACGCTCAGCGCGCCCGAATTGTCCCGGTCCAGTTTTCCGGA
AACGTTTGCCCAGCCGCCGGATCTCGTCGGCGTCGAAATTGGAACACATT
TCCATGGGCAGTGATGTTTCATTTCCCATGT

BO14179.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11217-PA 513 CanB2-RA 85..510 444..19 2080 99.5 Minus
CG11217-PA 513 CanB2-RA 1..87 529..443 435 100 Minus
CG4209-PA 513 CanB-RA 124..251 405..278 265 88.2 Minus
CG4209-PA 513 CanB-RA 418..509 111..20 185 88 Minus
CG4209-PA 513 CanB-RA 349..407 180..122 170 91.5 Minus
CG4209-PA 513 CanB-RA 256..320 273..209 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 257..766 529..19 2500 99.4 Minus
CanB2-RA 1143 CG11217-RA 257..766 529..19 2500 99.4 Minus
CanB-RB 1148 CG4209-RB 103..612 530..20 1360 84.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 486..186 1425 99 Minus
X 23542271 X 5333404..5333913 530..20 1335 84.5 Minus
2R 25286936 2R 7787589..7787758 188..19 850 100 Minus
2R 25286936 2R 7786499..7786539 527..487 205 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:25:28 has no hits.

BO14179.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:31 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-PA 1..513 15..529 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:25 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11217-PA 1..513 15..529 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:20 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..769 15..531 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:29 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..769 15..531 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:29 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7786496..7786539 487..531 95 -> Minus
2R 7787234..7787532 187..486 99 -> Minus
2R 7787591..7787761 15..186 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:20 Download gff for BO14179.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3674001..3674044 487..531 95 -> Minus
arm_2R 3674739..3675037 187..486 99 -> Minus
arm_2R 3675096..3675266 15..186 98   Minus

BO14179.5prime Sequence

542 bp (537 high quality bases) assembled on 2006-05-29

> BO14179.5prime
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAGACC

BO14179.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11217-PA 513 CanB2-RA 1..510 17..526 2550 100 Plus
CG4209-PA 513 CanB-RA 19..251 35..267 415 87.1 Plus
CG4209-PA 513 CanB-RA 418..509 434..525 185 88 Plus
CG4209-PA 513 CanB-RA 349..407 365..423 170 91.5 Plus
CG4209-PA 513 CanB-RA 256..320 272..336 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 257..766 17..526 2550 100 Plus
CanB2-RA 1143 CG11217-RA 257..766 17..526 2550 100 Plus
CanB-RB 1148 CG4209-RB 103..612 16..525 1410 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 60..359 1500 100 Plus
X 23542271 X 5333404..5333913 16..525 1410 85.1 Plus
2R 25286936 2R 7787589..7787758 357..526 850 100 Plus
2R 25286936 2R 7786499..7786539 19..59 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:44:49 has no hits.

BO14179.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:32 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:27 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11217-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:19 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..769 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:56 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..769 17..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:56 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7787234..7787532 60..358 100 -> Plus
2R 7787591..7787761 359..530 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:19 Download gff for BO14179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3675096..3675266 359..530 98   Plus
arm_2R 3674739..3675037 60..358 100 -> Plus

BO14179.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ633035

> BO14179.complete
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAGACCAT

BO14179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 513 CG11217-PB 1..510 17..526 2550 100 Plus
CanB2-RA 513 CG11217-PA 1..510 17..526 2550 100 Plus
CanB-RB 513 CG4209-PB 1..509 17..525 1405 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 257..766 17..526 2550 100 Plus
CanB2-RA 1143 CG11217-RA 257..766 17..526 2550 100 Plus
CanB-RB 1148 CG4209-RB 103..612 16..525 1410 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 60..359 1500 100 Plus
X 23542271 X 5333404..5333913 16..525 1410 85.1 Plus
2R 25286936 2R 7787589..7787758 357..526 850 100 Plus
2R 25286936 2R 7786499..7786539 19..59 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:43 has no hits.

BO14179.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:32 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:36 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..767 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:37 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..766 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:32 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..767 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:42 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..766 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:42 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7786498..7786539 17..59 97 -> Plus
2R 7787234..7787532 60..358 100 -> Plus
2R 7787591..7787758 359..528 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:37 Download gff for BO14179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3674003..3674044 17..59 97 -> Plus
arm_2R 3674739..3675037 60..358 100 -> Plus
arm_2R 3675096..3675263 359..528 98   Plus

BO14179.pep Sequence

Translation from 16 to 544

> BO14179.pep
MGNETSLPMEMCSNFDADEIRRLGKRFRKLDLDNSGALSVDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDVASFLDH

BO14179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-PB 170 CG11217-PB 1..170 1..170 874 100 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 874 100 Plus
CanB-PB 170 CG4209-PB 1..170 1..170 858 97.6 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 308 38.9 Plus