Clone BO14180 Report

Search the DGRC for BO14180

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptolf186-M-RA
Protein status:BO14180.pep: Imported from assembly
Sequenced Size:796

Clone Sequence Records

BO14180.5prime Sequence

588 bp (583 high quality bases) assembled on 2006-05-29

> BO14180.5prime
GAAGTTATCAGTCGACATGGAACGTTCGCACAGCTGTAGCAATTTCGAGG
GCAGGACGGGAGCCAAGGTCATCGTTGGCGCAGTGGAGCAATTGGCCGGC
AGCAGTGAGCACCTGCCCAGCGTCCACTTTCCGCCCAGCAAGCCGCTGCG
CAGGCGCAGAAAATTGCAGCGACAGCAGAGTGCCGTCGATACGGATGACA
TGGAATATGCCGCCGATCTGGAGGAGAATGCCGATCCGGATGCACATGAG
CATATGTCGCCCGTCGTCACCATGCCCATGCGCCATATATCTGCCACCAG
TACGCGTTGCCTGCGCCACGAGGAGTCCTTTGAGTCATCCAGCACGGCGC
CCGAACTGAGTCCGCAGGCGCAGAGGCAACAGCGCTTCAGTAGTCTGCTC
CTGCGTGACAGCTCCGTATCCGTGCAGTCGGACTCGAGTCGATATTCCAG
CGTGGACAGCTTGCTGGAGGCACGCAAGCCAGATCCCGAGGCCATACTCA
TCAACCTGGGCTTTGGACCGCTCATCTCCGAGGATATGCTGTCGCGGATA
CCGCGGAGGTTTCTGAAGCCCTCGCAAGTGCCTGGCAT

BO14180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14489-PA 765 olf186-M-RA 1..572 17..588 2835 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-RA 1746 CG14489-RA 733..1305 16..588 2850 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17847431..17848003 16..588 2850 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 16:13:46 has no hits.

BO14180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:33 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14489-PA 1..572 17..588 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:28 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14489-PA 1..572 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:29 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 721..1305 6..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:32 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 721..1305 6..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:32 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17847419..17848003 6..588 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:29 Download gff for BO14180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13734924..13735508 6..588 99   Plus

BO14180.complete Sequence

796 bp assembled on 2010-07-02

GenBank Submission: KX795791

> BO14180.complete
GAAGTTATCAGTCGACATGGAACGTTCGCACAGCTGTAGCAATTTCGAGG
GCAGGACGGGAGCCAAGGTCATCGTTGGCGCAGTGGAGCAATTGGCCGGC
AGCAGTGAGCACCTGCCCAGCGTCCACTTTCCGCCCAGCAAGCCGCTGCG
CAGGCGCAGAAAATTGCAGCGACAGCAGAGTGCCGTCGATACGGATGACA
TGGAATATGCCGCCGATCTGGAGGAGAATGCCGATCCGGATGCACATGAG
CATATGTCGCCCGTCGTCACCATGCCCATGCGCCATATATCTGCCACCAG
TACGCGTTGCCTGCGCCACGAGGAGTCCTTTGAGTCATCCAGCACGGCGC
CCGAACTGAGTCCGCAGGCGCAGAGGCAACAGCGCTTCAGTAGTCTGCTC
CTGCGTGACAGCTCCGTATCCGTGCAGTCGGACTCGAGTCGATATTCCAG
CGTGGACAGCTTGCTGGAGGCACGCAAGCCAGATCCCGAGGCCATACTCA
TCAACCTGGGCTTTGGACCGCTCAGCTCCGAGGATATGCTGTCGCGGATA
CCGCGGAGGTTTCTGAAGCCCTCGCAAGTGCCTGGCATCGATACGGATGC
CTTTGTGCAAAGACTGACTCTGGCGCGATCCCTGGCCGATTCGAGTGTTC
TGGGCTATAGGGGTCTAACCGGAAATCCGGACATGCCGCCCTCCTCAATT
GTGGCCAGCATTATGAAGCGATTCGAGGTCAATCATCATAGGAAAAACTC
CATGGGCTCCATTAAGCCCAGCATACAAGCAAGCTTTCTAGACCAT

BO14180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-RA 765 CG14489-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-RA 1746 CG14489-RA 733..1495 16..778 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17847431..17848193 16..778 3815 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:22:12 has no hits.

BO14180.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:03 Download gff for BO14180.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 732..1493 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:41 Download gff for BO14180.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 734..1495 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:46 Download gff for BO14180.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 734..1495 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:46 Download gff for BO14180.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17847432..17848193 17..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:41 Download gff for BO14180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13734937..13735698 17..780 99   Plus

BO14180.pep Sequence

Translation from 16 to 796

> BO14180.pep
MERSHSCSNFEGRTGAKVIVGAVEQLAGSSEHLPSVHFPPSKPLRRRRKL
QRQQSAVDTDDMEYAADLEENADPDAHEHMSPVVTMPMRHISATSTRCLR
HEESFESSSTAPELSPQAQRQQRFSSLLLRDSSVSVQSDSSRYSSVDSLL
EARKPDPEAILINLGFGPLSSEDMLSRIPRRFLKPSQVPGIDTDAFVQRL
TLARSLADSSVLGYRGLTGNPDMPPSSIVASIMKRFEVNHHRKNSMGSIK
PSIQASFLDH

BO14180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-PA 254 CG14489-PA 1..254 1..254 1285 100 Plus