Clone BO14187 Report

Search the DGRC for BO14187

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG42678-RB
Protein status:BO14187.pep: Imported from assembly
Sequenced Size:898

Clone Sequence Records

BO14187.5prime Sequence

615 bp (576 high quality bases) assembled on 2006-05-29

> BO14187.5prime
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAACAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCCAAAC

BO14187.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PF 867 CG30193-RF 1..594 17..610 2945 99.8 Plus
CG30193-PA 867 CG30193-RA 1..594 17..610 2945 99.8 Plus
CG30193-PB 867 CG30193-RB 1..594 17..610 2945 99.8 Plus
CG30193-PC 867 CG30193-RC 1..594 17..610 2945 99.8 Plus
CG30193-PE 867 CG30193-RE 1..594 17..610 2945 99.8 Plus
CG30193-PD 1308 CG30193-RD 474..1035 49..610 2785 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 2534 CG42678-RG 475..1068 17..610 2955 99.8 Plus
CG42678-RE 1469 CG42678-RE 411..1004 17..610 2955 99.8 Plus
CG42678-RD 1573 CG42678-RD 547..1108 49..610 2795 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22927250..22927448 122..320 995 100 Plus
2R 25286936 2R 22929086..22929264 432..610 880 99.4 Plus
2R 25286936 2R 22927513..22927629 317..433 585 100 Plus
2R 25286936 2R 22927099..22927173 49..123 375 100 Plus
Blast to na_te.dros performed on 2015-02-09 11:13:51 has no hits.

BO14187.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:39 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PB 1..599 17..615 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:37 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PE 1..599 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:42:51 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 406..1009 12..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:32 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 406..1009 12..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:32 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22927516..22927629 320..433 100 -> Plus
2R 22925576..22925612 12..48 94 -> Plus
2R 22927099..22927171 49..121 100 -> Plus
2R 22927250..22927447 122..319 100 -> Plus
2R 22929088..22929269 434..615 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:42:51 Download gff for BO14187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18815039..18815152 320..433 100 -> Plus
arm_2R 18816611..18816792 434..615 98   Plus
arm_2R 18813099..18813135 12..48 94 -> Plus
arm_2R 18814622..18814694 49..121 100 -> Plus
arm_2R 18814773..18814970 122..319 100 -> Plus

BO14187.complete Sequence

898 bp assembled on 2008-08-14

GenBank Submission: KX796596

> BO14187.complete
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGG
CGGAGTTCGATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGG
GACATGCCCGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAA
GGCTGCAGGCAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGA
GCTCCAGCAGCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAA
CCCACGCCCGATGTGGATGTGGAAAACTACGCAAGCTTTCTAGACCAT

BO14187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 867 CG42678-PG 1..864 17..880 4320 100 Plus
CG42678-RE 867 CG42678-PE 1..864 17..880 4320 100 Plus
CG42678-RD 1308 CG42678-PD 474..1305 49..880 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RG 2534 CG42678-RG 475..1338 17..880 4320 100 Plus
CG42678-RE 1469 CG42678-RE 411..1274 17..880 4320 100 Plus
CG42678-RD 1573 CG42678-RD 547..1378 49..880 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22929086..22929534 432..880 2245 100 Plus
2R 25286936 2R 22927250..22927448 122..320 995 100 Plus
2R 25286936 2R 22927513..22927629 317..433 585 100 Plus
2R 25286936 2R 22927099..22927173 49..123 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:16:14 has no hits.

BO14187.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:48 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RA 391..1271 12..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:11 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 411..1274 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:29 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RA 396..1259 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:25 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RE 411..1274 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:25 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22925581..22925612 17..48 100 -> Plus
2R 22927099..22927171 49..121 100 -> Plus
2R 22927250..22927447 122..319 100 -> Plus
2R 22927516..22927629 320..433 100 -> Plus
2R 22929088..22929534 434..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:11 Download gff for BO14187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18813104..18813135 17..48 100 -> Plus
arm_2R 18814622..18814694 49..121 100 -> Plus
arm_2R 18814773..18814970 122..319 100 -> Plus
arm_2R 18815039..18815152 320..433 100 -> Plus
arm_2R 18816611..18817057 434..882 99   Plus

BO14187.pep Sequence

Translation from 16 to 898

> BO14187.pep
MISSLFSRLIILFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTC
IETFTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHE
QEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGH
GRGLQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTET
KRLVIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKR
GQKHNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENYASFLDH

BO14187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-PG 288 CG30193-PG 1..288 1..288 1489 100 Plus
CG42678-PE 288 CG30193-PE 1..288 1..288 1489 100 Plus
CG42678-PD 435 CG30193-PD 159..435 12..288 1441 100 Plus
CG42678-PS 312 CG42678-PS 1..170 1..171 733 84.8 Plus
CG42678-PP 538 CG42678-PP 1..170 1..171 733 84.8 Plus