Clone Sequence Records
BO14187.5prime Sequence
615 bp (576 high quality bases) assembled on 2006-05-29
> BO14187.5prime
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAACAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCCAAAC
BO14187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30193-PF | 867 | CG30193-RF | 1..594 | 17..610 | 2945 | 99.8 | Plus |
CG30193-PA | 867 | CG30193-RA | 1..594 | 17..610 | 2945 | 99.8 | Plus |
CG30193-PB | 867 | CG30193-RB | 1..594 | 17..610 | 2945 | 99.8 | Plus |
CG30193-PC | 867 | CG30193-RC | 1..594 | 17..610 | 2945 | 99.8 | Plus |
CG30193-PE | 867 | CG30193-RE | 1..594 | 17..610 | 2945 | 99.8 | Plus |
CG30193-PD | 1308 | CG30193-RD | 474..1035 | 49..610 | 2785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 475..1068 | 17..610 | 2955 | 99.8 | Plus |
CG42678-RE | 1469 | CG42678-RE | 411..1004 | 17..610 | 2955 | 99.8 | Plus |
CG42678-RD | 1573 | CG42678-RD | 547..1108 | 49..610 | 2795 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22927250..22927448 | 122..320 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22929086..22929264 | 432..610 | 880 | 99.4 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 317..433 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22927099..22927173 | 49..123 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:13:51 has no hits.
BO14187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:39 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PB | 1..599 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:37 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PE | 1..599 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:42:51 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 406..1009 | 12..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:32 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 406..1009 | 12..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:32 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22927516..22927629 | 320..433 | 100 | -> | Plus |
2R | 22925576..22925612 | 12..48 | 94 | -> | Plus |
2R | 22927099..22927171 | 49..121 | 100 | -> | Plus |
2R | 22927250..22927447 | 122..319 | 100 | -> | Plus |
2R | 22929088..22929269 | 434..615 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:42:51 Download gff for
BO14187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18815039..18815152 | 320..433 | 100 | -> | Plus |
arm_2R | 18816611..18816792 | 434..615 | 98 | | Plus |
arm_2R | 18813099..18813135 | 12..48 | 94 | -> | Plus |
arm_2R | 18814622..18814694 | 49..121 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 122..319 | 100 | -> | Plus |
BO14187.complete Sequence
898 bp assembled on 2008-08-14
GenBank Submission: KX796596
> BO14187.complete
GAAGTTATCAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATAT
TGTTCTGCGGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGG
ACCAAGGATGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTT
TGCATTTTTCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGC
TACCGTTCTACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCG
CCGGCCACAAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTAT
GTTGACGCGCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAG
AGCGCGGCTATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTAT
GCCACCAATGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTAC
GGCGCCATCTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATG
AGCTGTACAGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCG
CGAGCCAGTTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGA
GCCGAGGACCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGG
CGGAGTTCGATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGG
GACATGCCCGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAA
GGCTGCAGGCAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGA
GCTCCAGCAGCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAA
CCCACGCCCGATGTGGATGTGGAAAACTACGCAAGCTTTCTAGACCAT
BO14187.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 867 | CG42678-PG | 1..864 | 17..880 | 4320 | 100 | Plus |
CG42678-RE | 867 | CG42678-PE | 1..864 | 17..880 | 4320 | 100 | Plus |
CG42678-RD | 1308 | CG42678-PD | 474..1305 | 49..880 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 475..1338 | 17..880 | 4320 | 100 | Plus |
CG42678-RE | 1469 | CG42678-RE | 411..1274 | 17..880 | 4320 | 100 | Plus |
CG42678-RD | 1573 | CG42678-RD | 547..1378 | 49..880 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22929086..22929534 | 432..880 | 2245 | 100 | Plus |
2R | 25286936 | 2R | 22927250..22927448 | 122..320 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 317..433 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22927099..22927173 | 49..123 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:14 has no hits.
BO14187.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:48 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RA | 391..1271 | 12..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:11 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 411..1274 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:29 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RA | 396..1259 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:25 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 411..1274 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:25 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22925581..22925612 | 17..48 | 100 | -> | Plus |
2R | 22927099..22927171 | 49..121 | 100 | -> | Plus |
2R | 22927250..22927447 | 122..319 | 100 | -> | Plus |
2R | 22927516..22927629 | 320..433 | 100 | -> | Plus |
2R | 22929088..22929534 | 434..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:11 Download gff for
BO14187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18813104..18813135 | 17..48 | 100 | -> | Plus |
arm_2R | 18814622..18814694 | 49..121 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 122..319 | 100 | -> | Plus |
arm_2R | 18815039..18815152 | 320..433 | 100 | -> | Plus |
arm_2R | 18816611..18817057 | 434..882 | 99 | | Plus |
BO14187.pep Sequence
Translation from 16 to 898
> BO14187.pep
MISSLFSRLIILFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTC
IETFTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHE
QEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGH
GRGLQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTET
KRLVIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKR
GQKHNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENYASFLDH
BO14187.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-PG | 288 | CG30193-PG | 1..288 | 1..288 | 1489 | 100 | Plus |
CG42678-PE | 288 | CG30193-PE | 1..288 | 1..288 | 1489 | 100 | Plus |
CG42678-PD | 435 | CG30193-PD | 159..435 | 12..288 | 1441 | 100 | Plus |
CG42678-PS | 312 | CG42678-PS | 1..170 | 1..171 | 733 | 84.8 | Plus |
CG42678-PP | 538 | CG42678-PP | 1..170 | 1..171 | 733 | 84.8 | Plus |