Clone Sequence Records
BO14191.5prime Sequence
609 bp (535 high quality bases) assembled on 2006-05-29
> BO14191.5prime
GAAGTTATCAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGC
TCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTT
GCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGAT
TGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTG
GTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCC
ATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGG
TGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCC
CCGCTCCCGCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAAC
GAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGT
AAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTC
TGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCCAGCAAGAGAC
CGCCATCTATTGTCCTGAACAAGCAGGCCGATATTGAAGATCTTGCCCAG
AAACTGAAC
BO14191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6447-PB | 840 | CG6447-RB | 1..523 | 17..539 | 2615 | 100 | Plus |
| CG6447-PA | 858 | CG6447-RA | 19..541 | 17..539 | 2615 | 100 | Plus |
| CG6478-PA | 861 | CG6478-RA | 229..541 | 227..539 | 1440 | 98.4 | Plus |
| CG5468-PA | 867 | CG5468-RA | 19..143 | 17..141 | 550 | 97.6 | Plus |
| CG6478-PA | 861 | CG6478-RA | 26..110 | 24..108 | 325 | 95.2 | Plus |
| CG5468-PA | 867 | CG5468-RA | 475..553 | 461..539 | 320 | 96.2 | Plus |
| CG5476-PA | 930 | CG5476-RA | 511..604 | 446..539 | 320 | 93.6 | Plus |
| CG6452-PA | 690 | CG6452-RA | 250..342 | 446..538 | 290 | 92.4 | Plus |
| CG5476-PA | 930 | CG5476-RA | 400..485 | 335..420 | 280 | 93 | Plus |
| CG5476-PA | 930 | CG5476-RA | 20..110 | 18..108 | 255 | 91.2 | Plus |
| CG6478-PA | 861 | CG6478-RA | 127..218 | 125..216 | 235 | 90.2 | Plus |
| CG6447-PB | 840 | CG6447-RB | 543..591 | 561..609 | 220 | 97.9 | Plus |
| CG6447-PA | 858 | CG6447-RA | 561..609 | 561..609 | 220 | 97.9 | Plus |
| CG5476-PA | 930 | CG5476-RA | 624..672 | 561..609 | 220 | 97.9 | Plus |
| CG6478-PA | 861 | CG6478-RA | 561..609 | 561..609 | 195 | 95.9 | Plus |
| CG5468-PA | 867 | CG5468-RA | 386..434 | 372..420 | 195 | 95.9 | Plus |
| CG5471-PA | 924 | CG5471-RA | 442..495 | 452..505 | 195 | 94.4 | Plus |
| CG6460-PA | 744 | CG6460-RA | 334..387 | 452..505 | 170 | 92.5 | Plus |
| CG5468-PA | 867 | CG5468-RA | 573..605 | 561..593 | 140 | 96.9 | Plus |
| CG31080-PA | 726 | CG31080-RA | 338..380 | 471..513 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..659 | 17..609 | 2885 | 99.3 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..723 | 17..609 | 2885 | 99.3 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..656 | 24..609 | 2370 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624930..26625520 | 609..17 | 2835 | 99.3 | Minus |
| 3R | 32079331 | 3R | 26622820..26623403 | 609..24 | 2320 | 93.9 | Minus |
| 3R | 32079331 | 3R | 26632323..26632602 | 328..609 | 950 | 90.8 | Plus |
| 3R | 32079331 | 3R | 26619592..26619864 | 335..609 | 765 | 86.9 | Plus |
| 3R | 32079331 | 3R | 26619262..26619485 | 17..243 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26626293..26626448 | 603..446 | 450 | 88.6 | Minus |
| 3R | 32079331 | 3R | 26630220..26630453 | 374..609 | 450 | 81.4 | Plus |
| 3R | 32079331 | 3R | 26628219..26628458 | 609..368 | 420 | 80.2 | Minus |
| 3R | 32079331 | 3R | 26634088..26634314 | 365..593 | 370 | 79.5 | Plus |
| 3R | 32079331 | 3R | 26631943..26632040 | 11..108 | 340 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:03:50 has no hits.
BO14191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:43 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-PB | 1..591 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:43 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-PA | 11..609 | 8..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:20 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..723 | 11..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:30 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..723 | 11..609 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:30 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624930..26625523 | 11..609 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:20 Download gff for
BO14191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450652..22451245 | 11..609 | 98 | | Minus |
BO14191.complete Sequence
871 bp assembled on 2008-11-10
GenBank Submission: KX798959
> BO14191.complete
GAAGTTATCAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGC
TCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTT
GCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGAT
TGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTG
GTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCC
ATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGG
TGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCC
CCGCTCCCGCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAAC
GAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGT
AAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTC
TGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACC
GCCATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATCTTGCCCAGAA
ACTGAACGCCATCCGCAACAACAATAACAACAAGCCCGAGGTGCACTTCG
TCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCGCGCCATCCAG
TCGCAGTACGACCAATTGGGAGGATCCTCTCAGGCCCACAACGGTGGTGT
GGCACCCGCCCTGAACTTCGCCTCCGCTGGTCCCGTCCAGAAGGCTAATG
CTCAGATCCCTGAGAACGCTTACCTGCCCACTTCCATCTTCCGTCGTCGT
TTGGCAAGCTTTCTAGACCAT
BO14191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 858 | CG6447-PA | 19..855 | 17..853 | 4185 | 100 | Plus |
| TwdlL-RB | 840 | CG6447-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
| TwdlB-RA | 861 | CG6478-PA | 26..850 | 24..848 | 3345 | 93.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..905 | 17..853 | 4185 | 100 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..969 | 17..853 | 4185 | 100 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..897 | 24..848 | 3345 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624684..26625520 | 853..17 | 4185 | 100 | Minus |
| 3R | 32079331 | 3R | 26622579..26623403 | 848..24 | 3345 | 93.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632824 | 328..829 | 1775 | 90.2 | Plus |
| 3R | 32079331 | 3R | 26619592..26620103 | 335..846 | 1540 | 86.7 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 374..775 | 1080 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 775..368 | 1065 | 84.1 | Minus |
| 3R | 32079331 | 3R | 26626108..26626448 | 786..446 | 880 | 83.9 | Minus |
| 3R | 32079331 | 3R | 26634088..26634494 | 365..771 | 865 | 80.8 | Plus |
| 3R | 32079331 | 3R | 26619262..26619485 | 17..243 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620774..26621063 | 753..464 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26631943..26632040 | 11..108 | 340 | 89.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 524..718 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 473..575 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:44:32 has no hits.
BO14191.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:12 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 61..914 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:37 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 133..969 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:05 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 69..905 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:25 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 133..969 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:25 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624682..26625520 | 17..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:37 Download gff for
BO14191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450404..22451242 | 17..855 | 99 | | Minus |
BO14191.pep Sequence
Translation from 16 to 871
> BO14191.pep
MCLVAVACADKLGYNYQPVGHSSSGLSFAPGSGSIGGGSIGGGSIGGGSI
GGGSIGGGLIGGGSIGGGSIGGGSLGGSIGGGSIDSGLGGLGGLGGLGGG
DALAAPVSYNAPAPAAELQKEFFTYSANEQDFDEPQELERVAGSVNKGLR
VVFIKGPENRGLENAALALAKQAAQQETAIYVLNKQADIGDLAQKLNAIR
NNNNNKPEVHFVKYRTPEDAANAQRAIQSQYDQLGGSSQAHNGGVAPALN
FASAGPVQKANAQIPENAYLPTSIFRRRLASFLDH
BO14191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-PB | 279 | CG6447-PB | 1..279 | 1..279 | 1431 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 7..285 | 1..279 | 1431 | 100 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 7..283 | 1..277 | 1396 | 97.5 | Plus |
| TwdlM-PA | 288 | CG5468-PA | 7..287 | 1..277 | 1221 | 84.4 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 7..304 | 1..277 | 1066 | 74.6 | Plus |
