Clone Sequence Records
BO14204.3prime Sequence
893 bp (834 high quality bases) assembled on 2006-05-29
> BO14204.3prime
ATGGTCTAGAAAGCTTGCGGCAATCATATCCGCATCCTTGTCCTGGTTGC
AGAGAGTGAGGCCATTGCCCAGACAGGCGGCATAGCCCATTATATGGGGC
AGCAGATTCTGCTCCATGACGCCACCGAACAGATGCGACTGCGGGCCCAT
TGCAAACACGACCACATCCTCGCCAGAATGCACGCCCTTTCTTCCATGAA
TATAGCTGGGTGTGTAGGATGTGGGACTCAATGTCTTGCTGGGACTCTCC
CGACGTCCATCCTTGTCCAGACTCTGCCACTTGCCGATGGCATAGTTGAG
GGTGCTGTATGGCACCCCGTTCACATCCCGCTGCTGTGCATCCATGCCCA
GGATGGGTGTGCCCCGCTTCGCGTATCCCGACATGCTAAGCGTATGCGAA
TGATCGGCGGTGACCACTACCAGAGTATCGCGCGGATCGGTCATCTGGAT
CACCGTCTCCACAGCCGCATCGAACTCGACCATCTCATCGAGGGCGTAGC
CCACCCGGGTTTCGTGGTGTCCATGATCAATCCGTCCGCCCTCAATGAAC
ACGAAGTAACCATTCCCATCCTCCTGAGACTTTCTCTCCAGTTTTTCAAT
GGCCGCCGCTGCCATGTCGCAGAGTCGCGGCAGCTCCTTGCTGGCGGCCA
AGTGATATGACATGTGGCTGTCGCTGAAGATACCCAGCAGTGTACCGGTA
GCATCGGTGCAGTTCCTCAGCTCTTTCAGGGATCGCGAGAAGCAGCCATT
GGGATTCGATTCACGCCACTGAGCCAGCAGATCCTTGCCATCCCGTCGCT
CATCGGCAAATTTTCCCAGACCACCGCCCAGGATGACTTTAAGATTCCGT
CCCGGCTCCTCCTCCACCAGCTGTCGCGCAATCTCCAGCTCCT
BO14204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-PA | 1452 | CG8105-RA | 575..1449 | 893..19 | 4325 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-RA | 1569 | CG8105-RA | 631..1505 | 893..19 | 4345 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15588363..15589034 | 893..222 | 3330 | 99.7 | Minus |
X | 23542271 | X | 15589099..15589301 | 221..19 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:44:18 has no hits.
BO14204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:55 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-PA | 575..1452 | 16..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:00 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-PA | 575..1452 | 16..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:54:58 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 631..1505 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:26 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 631..1505 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:26 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15588363..15589034 | 222..893 | 99 | -> | Minus |
X | 15589099..15589301 | 19..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:54:58 Download gff for
BO14204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15482396..15483067 | 222..893 | 99 | -> | Minus |
arm_X | 15483132..15483334 | 19..221 | 100 | | Minus |
BO14204.5prime Sequence
880 bp (757 high quality bases) assembled on 2006-05-29
> BO14204.5prime
GAAGTTATCAGTCGACATGTTGCTCCAATTGAGGCGATTGGCGATCCTGT
TCCTGCTCCACGCTCTCATCCCCATCCTTGCGCTATCTGTTCCCATGGTG
GAGCAAGTGCAGCCGGCGGACGAGCTGCTATCGTCGCATTGGCTAAGACA
GGCGCAGTCTCAGTTGCGCGAACGTCTGGCCAGAACCAAGGACTCCATCG
CCGACGTCCGACAGGCCAAGAATGTGGTGATGCTCCTGGGCGATGGACTG
TCCATCACCACCTTAACGGCCGCTCGCATCCTAAAGGGGCAACGTCGCGG
CGGACGCGGAGAGGATGCACAGCTGGCCGTGGAACAATTCCCCTTCAGCG
GACTGAGCAAGACATACTGCATCGACGAGCAGACACCGGACTCCGCCTGC
ACGGCCACCGCCTATTTCGGCGGTGTGAAGACGCACAGCGGCACAGTGGG
TCAGAGTGGCAGTGGTGAGCGCGTGGACTCCGTACTCCAGTGGGCACAGC
GAGCGGGCAAGGCCACGGGAGTGGTGACCACCACCCGTTTGACGGACGCC
AGTCCGGCTGGTGCCTACGCCCATGTGAGCAGGCGTGGCGAGGAGCTGGA
GATTGCGCGACAGCTGGTGGAGGAGGAGCCGGGACGGAATCTTAATGTCA
TCCTGGGCGGTGGTCTGGGAAAATTTGCCGATGAGCGACGGGATGGCAAG
GATCTGCTGGCTCAGTGGCGTGAATCGAATCCCAATGGCTGCTTCTCGCG
ATCCCTGAAAGAGCTGAGGAACTGCACCGATGCTACCGGTACACTGCTGG
GTATCTTCAGCGACAGCCACATGTCATAATCACTTGGCCGCCAGCAAAGA
GCTGCCGCGACTCTGCCACATGGCAGCGGG
BO14204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-PA | 1452 | CG8105-RA | 1..812 | 17..828 | 4035 | 99.8 | Plus |
CG8105-PA | 1452 | CG8105-RA | 812..862 | 829..879 | 205 | 96 | Plus |
CG1809-PA | 1548 | CG1809-RA | 379..411 | 398..430 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-RA | 1569 | CG8105-RA | 50..918 | 10..879 | 4250 | 99.3 | Plus |
CG3292-RA | 1713 | CG3292-RA | 443..537 | 338..432 | 190 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15587782..15588650 | 10..879 | 4225 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:44:05 has no hits.
BO14204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:56 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-PA | 1..862 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:02 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-PA | 1..862 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:46 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 50..918 | 10..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:51 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 50..918 | 10..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:51 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15587782..15588650 | 10..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:46 Download gff for
BO14204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15481815..15482683 | 10..880 | 99 | | Plus |
BO14204.complete Sequence
1483 bp assembled on 2006-10-11
GenBank Submission: FJ633036
> BO14204.complete
GAAGTTATCAGTCGACATGTTGCTCCAATTGAGGCGATTGGCGATCCTGT
TCCTGCTCCACGCTCTCATCCCCATCCTTGCGCTATCTGTTCCCATGGTG
GAGCAAGTGCAGCCGGCGGACGAGCTGCTATCGTCGCATTGGCTAAGACA
GGCGCAGTCTCAGTTGCGCGAACGTCTGGCCAGAACCAAGGACTCCATCG
CCGACGTCCGACAGGCCAAGAATGTGGTGATGCTCCTGGGCGATGGACTG
TCCATCACCACCTTAACGGCCGCTCGCATCCTAAAGGGGCAACGTCGCGG
CGGACGCGGAGAGGATGCACAGCTGGCCGTGGAACAATTCCCCTTCAGCG
GACTGAGCAAGACATACTGCATCGACGAGCAGACACCGGACTCCGCCTGC
ACGGCCACCGCCTATTTCGGCGGTGTGAAGACGCACAGCGGCACAGTGGG
TCAGAGTGGCAGTGGTGAGCGCGTGGACTCCGTACTCCAGTGGGCACAGC
GAGCGGGCAAGGCCACGGGAGTGGTGACCACCACCCGTTTGACGGACGCC
AGTCCGGCTGGTGCCTACGCCCATGTGAGCAGGCGTGGCGAGGAGCTGGA
GATTGCGCGACAGCTGGTGGAGGAGGAGCCGGGACGGAATCTTAATGTCA
TCCTGGGCGGTGGTCTGGGAAAATTTGCCGATGAGCGACGGGATGGCAAG
GATCTGCTGGCTCAGTGGCGTGAATCGAATCCCAATGGCTGCTTCTCGCG
ATCCCTGAAAGAGCTGAGGAACTGCACCGATGCTACCGGTACACTGCTGG
GTATCTTCAGCGACAGCCACATGTCATATCACTTGGCCGCCAGCAAGGAG
CTGCCGCGACTCTGCGACATGGCAGCGGCGGCCATTGAAAAACTGGAGAG
AAAGTCTCAGGAGGATGGGAATGGTTACTTCGTGTTCATTGAGGGCGGAC
GGATTGATCATGGACACCACGAAACCCGGGTGGGCTACGCCCTCGATGAG
ATGGTCGAGTTCGATGCGGCTGTGGAGACGGTGATCCAGATGACCGATCC
GCGCGATACTCTGGTAGTGGTCACCGCCGATCATTCGCATACGCTTAGCA
TGTCGGGATACGCGAAGCGGGGCACACCCATCCTGGGCATGGATGCACAG
CAGCGGGATGTGAACGGGGTGCCATACAGCACCCTCAACTATGCCATCGG
CAAGTGGCAGAGTCTGGACAAGGATGGACGTCGGGAGAGTCCCAGCAAGA
CATTGAGTCCCACATCCTACACACCCAGCTATATTCATGGAAGAAAGGGC
GTGCATTCTGGCGAGGATGTGGTCGTGTTTGCAATGGGCCCGCAGTCGCA
TCTGTTCGGTGGCGTCATGGAGCAGAATCTGCTGCCCCATATAATGGGCT
ATGCCGCCTGTCTGGGCAATGGCCTCACTCTCTGCAACCAGGACAAGGAT
GCGGATATGATTGCCGCAAGCTTTCTAGACCAT
BO14204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-RA | 1452 | CG8105-PA | 1..1449 | 17..1465 | 7230 | 99.9 | Plus |
CG3292-RA | 1632 | CG3292-PA | 400..494 | 338..432 | 190 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-RA | 1569 | CG8105-RA | 50..1505 | 10..1465 | 7235 | 99.8 | Plus |
CG3292-RA | 1713 | CG3292-RA | 443..537 | 338..432 | 190 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15587782..15589034 | 10..1262 | 6220 | 99.8 | Plus |
X | 23542271 | X | 15589099..15589301 | 1263..1465 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:05:57 has no hits.
BO14204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:07:12 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 1..1452 | 17..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:43 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 50..1505 | 10..1465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:06 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 62..1505 | 22..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:07:13 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 50..1505 | 10..1465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:28 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8105-RA | 62..1505 | 22..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:28 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15587794..15589034 | 22..1262 | 99 | -> | Plus |
X | 15589099..15589301 | 1263..1467 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:06 Download gff for
BO14204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15481827..15483067 | 22..1262 | 99 | -> | Plus |
arm_X | 15483132..15483334 | 1263..1467 | 99 | | Plus |
BO14204.pep Sequence
Translation from 16 to 1483
> BO14204.pep
MLLQLRRLAILFLLHALIPILALSVPMVEQVQPADELLSSHWLRQAQSQL
RERLARTKDSIADVRQAKNVVMLLGDGLSITTLTAARILKGQRRGGRGED
AQLAVEQFPFSGLSKTYCIDEQTPDSACTATAYFGGVKTHSGTVGQSGSG
ERVDSVLQWAQRAGKATGVVTTTRLTDASPAGAYAHVSRRGEELEIARQL
VEEEPGRNLNVILGGGLGKFADERRDGKDLLAQWRESNPNGCFSRSLKEL
RNCTDATGTLLGIFSDSHMSYHLAASKELPRLCDMAAAAIEKLERKSQED
GNGYFVFIEGGRIDHGHHETRVGYALDEMVEFDAAVETVIQMTDPRDTLV
VVTADHSHTLSMSGYAKRGTPILGMDAQQRDVNGVPYSTLNYAIGKWQSL
DKDGRRESPSKTLSPTSYTPSYIHGRKGVHSGEDVVVFAMGPQSHLFGGV
MEQNLLPHIMGYAACLGNGLTLCNQDKDADMIAASFLDH
BO14204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8105-PA | 483 | CG8105-PA | 1..483 | 1..483 | 2490 | 100 | Plus |
CG3264-PB | 533 | CG3264-PB | 52..532 | 29..474 | 1032 | 44.6 | Plus |
CG3264-PA | 533 | CG3264-PA | 52..532 | 29..474 | 1032 | 44.6 | Plus |
CG3292-PA | 543 | CG3292-PA | 62..542 | 33..476 | 1021 | 45.1 | Plus |
CG3290-PA | 538 | CG3290-PA | 57..531 | 33..473 | 1020 | 44.8 | Plus |