Clone Sequence Records
BO14206.3prime Sequence
915 bp (845 high quality bases) assembled on 2006-05-29
> BO14206.3prime
ATGGTCTAGAAAGCTTGCATCGAAATAGTATTCCTGTGGCGTTTTCTTTT
GGCGCGGCGAATTGAAGCCCCCGATCCGCGAGGAGGTGATGCTAACGTTG
TCCGGTTCATATGGAGATCCCTTGCGCAGCCTGGACTTCACCTTAAAGTA
ATTGGATATGACCTGGTCGACCTTGGTTACCGGTACCTTTTCGGCCAGTT
CCTTCTCGCACCGGGATACCACGTTGGTGAGCAGCAGTCCCCCGGAGCGA
TAGAACTGGACGAGCTTGTCCCGCTTGAGCCACTTCTGCAGGATCTGCAC
GCTGTGCGGCTCGTAGATGCGATACACCTTGTAGAAATGCTCGTAGTTTT
CATTCATCTTGCGCGCTTTCAAGGCGTCGATCTTGGGAATGTCCAAGTGC
GGCTGGCGAATGATGTGGTACGGATCGTAGCCAAGCGAAAAGTTTGAGTA
GCGAACTGTGGGCCAGTCCAGGTCTAGGATGGTGTTGTACAGATCCTTCG
GATGTCCCAGTATGCCGTGTGCCACATCGATCATACGCAGCTGTGGTCCC
GGCACAATGTACTCCAGCTCCATCTCGGCAATGCGCTTGTCGTTGCCTCG
GTACTTTCGCTCGCCAATCCACAGGATGGGCATGTCCTCCTCCGCCACGT
GCTCCAACTCCTGGACGAGCGGCGATATCTGGGTGCGATAGTTAACGATT
TTATGGTTCCGACCGTACAGTAAACTGCGCTCCGCCGGCGTANAGCTCAG
ATACTCCGGACGTGCCATAACAAAGTGATCGGAACGAAACAGACGGTTCA
TTTCCATCTCAATGACATTGTACGCACGGCGATGCATGCAGATCCAAACA
ATCTGGGTCATCACGGCCAGAAACTGCTCGTGGAAGACGCGGTCGCGACT
GGTATCCGAAATATT
BO14206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 1464 | CG14689-RA | 565..1461 | 915..19 | 4466 | 99.8 | Minus |
CG31467-PA | 1443 | CG31467-RA | 901..935 | 585..551 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 674..1570 | 915..19 | 4474 | 99.9 | Minus |
CG31391-RA | 1704 | CG31391-RA | 686..1136 | 886..436 | 519 | 74.8 | Minus |
CG31467-RA | 1694 | CG31467-RA | 730..1179 | 885..436 | 469 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10709679..10710575 | 19..915 | 4474 | 99.9 | Plus |
3R | 32079331 | 3R | 10703940..10704390 | 436..886 | 504 | 74.1 | Plus |
3R | 32079331 | 3R | 10705685..10706134 | 436..885 | 439 | 73.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:43:26 has no hits.
BO14206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:20:59 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 565..1464 | 16..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:06 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 565..1464 | 16..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:28 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 674..1570 | 19..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:11 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 674..1570 | 19..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:11 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10709679..10710575 | 19..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:28 Download gff for
BO14206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6535401..6536297 | 19..915 | 99 | | Plus |
BO14206.5prime Sequence
956 bp (849 high quality bases) assembled on 2006-05-29
> BO14206.5prime
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAAC
CGTCTGTTTCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAG
CTTTACGCCGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCG
TTAACTATCGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTG
GCGGAGGAGGACATGCCCATCCTGTGGATTGGCGAGCGAAGTACCGAGGC
AACGACAAGCGCATTGCCGAGATGGAGCTGGAGTACTTTGTGCCGGGACC
ACAGCT
BO14206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 1464 | CG14689-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG14689-PA | 1464 | CG14689-RA | 874..941 | 889..956 | 315 | 98.5 | Plus |
CG31391-PA | 1443 | CG31391-RA | 132..193 | 148..209 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 109..1050 | 16..956 | 4670 | 99.8 | Plus |
CG31391-RA | 1704 | CG31391-RA | 87..1033 | 17..956 | 755 | 73.1 | Plus |
CG31467-RA | 1694 | CG31467-RA | 552..1064 | 433..944 | 410 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10710199..10711140 | 956..16 | 4645 | 99.8 | Minus |
3R | 32079331 | 3R | 10704797..10704989 | 209..17 | 470 | 82.9 | Minus |
3R | 32079331 | 3R | 10704043..10704560 | 956..440 | 410 | 72.4 | Minus |
3R | 32079331 | 3R | 10706542..10706722 | 209..29 | 395 | 81.2 | Minus |
3R | 32079331 | 3R | 10705800..10706312 | 944..433 | 370 | 71.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:14:45 has no hits.
BO14206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:00 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:07 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:43:05 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..1050 | 10..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:41 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..1050 | 10..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:41 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10710199..10711143 | 10..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:43:05 Download gff for
BO14206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6535921..6536865 | 10..956 | 99 | | Minus |
BO14206.complete Sequence
1495 bp assembled on 2006-10-11
GenBank Submission: FJ633037
> BO14206.complete
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAAC
CGTCTGTTTCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAG
CTTTACGCCGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCG
TTAACTATCGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTG
GCGGAGGAGGACATGCCCATCCTGTGGATTGGCGAGCGAAAGTACCGAGG
CAACGACAAGCGCATTGCCGAGATGGAGCTGGAGTACATTGTGCCGGGAC
CACAGCTGCGTATGATCGATGTGGCACACGGCATACTGGGACATCCGAAG
GATCTGTACAACACCATCCTAGACCTGGACTGGCCCACAGTTCGCTACTC
AAACTTTTCGCTTGGCTACGATCCGTACCACATCATTCGCCAGCCGCACT
TGGACATTCCCAAGATCGACGCCTTGAAAGCGCGCAAGATGAATGAAAAC
TACGAGCATTTCTACAAGGTGTATCGCATCTACGAGCCGCACAGCGTGCA
GATCCTGCAGAAGTGGCTCAAGCGGGACAAGCTCGTCCAGTTCTATCGCT
CCGGGGGACTGCTGCTCACCAACGTGGTATCCCGGTGCGAGAAGGAACTG
GCCGAAAAGGTACCGGTAACCAAGGTCGACCAGGTCATATCCAATTACTT
TAAGGTGAAGTCCAGGCTGCGCAAGGGATCTCCATATGAACCGGACAACG
TTAGCATCACCTCCTCGCGGATCGGGGGCTTCAATTCGCCGCGCCAAAAG
AAAACGCCACAGGAATACTATTTCGATGCAAGCTTTCTAGACCAT
BO14206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1464 | CG14689-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG31391-RA | 1443 | CG31391-PA | 430..1050 | 440..1060 | 600 | 73.1 | Plus |
CG31391-RA | 1443 | CG31391-PA | 1..193 | 17..209 | 470 | 82.9 | Plus |
CG31467-RA | 1443 | CG31467-PA | 423..1050 | 433..1060 | 470 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 109..1570 | 16..1477 | 7310 | 100 | Plus |
CG31391-RA | 1704 | CG31391-RA | 516..1136 | 440..1060 | 600 | 73.1 | Plus |
CG31391-RA | 1704 | CG31391-RA | 87..279 | 17..209 | 470 | 82.9 | Plus |
CG31467-RA | 1694 | CG31467-RA | 552..1179 | 433..1060 | 470 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10709679..10711140 | 1477..16 | 7310 | 100 | Minus |
3R | 32079331 | 3R | 10703940..10704560 | 1060..440 | 600 | 73.1 | Minus |
3R | 32079331 | 3R | 10704797..10704989 | 209..17 | 470 | 82.9 | Minus |
3R | 32079331 | 3R | 10705685..10706312 | 1060..433 | 470 | 71.7 | Minus |
3R | 32079331 | 3R | 10706542..10706722 | 209..29 | 395 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:14 has no hits.
BO14206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:07:16 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 1..1464 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:45 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..1570 | 10..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:50 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1570 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:07:17 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..1570 | 10..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:48 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1570 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:48 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10709676..10711139 | 17..1479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:50 Download gff for
BO14206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6535398..6536861 | 17..1479 | 99 | | Minus |
BO14206.pep Sequence
Translation from 16 to 1495
> BO14206.pep
MKRVHVDNYTPKYYSGKWSWSAEKDCLEFEPHNDLENARERYITTNGYKF
LRIIDQEEELIFRQAYVRDTGTYDFDTLVINDIRDLVLFLMPSDFLTYRF
VEFMHRPAVHRLIHALIIYFEYFLRMVEFVLVRRDELADQIQSDQTIDMK
KTFSIYLSQYRLLVARNYSVILKGEGDMAKYYHMKEIINISDTSRDRVFH
EQFLAVMTQIVWICMHRRAYNVIEMEMNRLFRSDHFVMARPEYLSFTPAE
RSLLYGRNHKIVNYRTQISPLVQELEHVAEEDMPILWIGERKYRGNDKRI
AEMELEYIVPGPQLRMIDVAHGILGHPKDLYNTILDLDWPTVRYSNFSLG
YDPYHIIRQPHLDIPKIDALKARKMNENYEHFYKVYRIYEPHSVQILQKW
LKRDKLVQFYRSGGLLLTNVVSRCEKELAEKVPVTKVDQVISNYFKVKSR
LRKGSPYEPDNVSITSSRIGGFNSPRQKKTPQEYYFDASFLDH
BO14206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 487 | CG14689-PA | 1..487 | 1..487 | 2577 | 100 | Plus |
CG31391-PA | 480 | CG31391-PA | 1..478 | 1..477 | 1723 | 67.7 | Plus |
CG31467-PA | 480 | CG31467-PA | 1..469 | 1..469 | 1685 | 68.2 | Plus |