Clone Sequence Records
BO14207.3prime Sequence
842 bp (752 high quality bases) assembled on 2006-05-29
> BO14207.3prime
ATGGTCTAGAAAGCTTGCGTACTCGGAAACATAGATAATGGGAGTGGTCT
CGATTAGCAGAATGTCCTGCTCCACCTGGCGAAGATCGGACTCCAGCTTG
CTTTTGCGCTGCCGCTTGGCGATGCTGTCGATAAGGAGCGACATCGACTG
ATACTGCTTGGTCATCTCGGTCAGGCTCAGTCGCAGTCCCTCGAGGATCT
CATTTCGCTCGGCCTGCTCCATCACCCGCATACCCGGCATTGGCGGCGGA
CCACTTGATTGGACGGATGCCCTGGTGAAACCCTTGATACCGCGGCACAG
CTCCAGCAAACGTGCCTGTTCCTTGGCACACACCGCATTCATGTCGGCCA
ACATCCTCTTGGTTTTCTTGAGGTAAACAGGCACCTTGCCGAAATCCTTG
CGGCAGATAAACTGCGGTACCAATCCGGAATTGAGTAGATCGTGACGAGC
TCCCACGGGAGTGTCTACATAACGAGGTGGCGGGGGACAGGGAACCGTTT
GTCCGGCACATATCTTGTTGCGTTTGATGAAGTTAGGTACCATTGCCGGC
TTTTTGCCGCCACTGCCCGGTGGTGGTAGTGGGGGCATTGGCGGCATCTT
GGGACACTTGTGGGTGTTCTCTCGCCGCCATTTGATGCCCTGGCTCTTGC
GCAAATAGGCGCACGGTGGGTCAATCGGAGTGTGAGCACAGCCCATGGTG
CGGTGGGCTGATTTCTTGGCCTCTGTCAGGACGCGGGTTCCATCGTTCTG
GAGGATAATCGATAGCTTCTTGTCCTCCTCGTTAAAGCGTTCGCGAAGTC
TCTTGGCATACTTGGCTGCCCTCTCCACAACAAGATTTTTGT
BO14207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 924 | CG16984-RA | 98..921 | 842..19 | 4095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 1162 | CG16984-RA | 187..1010 | 842..19 | 4105 | 99.9 | Minus |
CG12182-RC | 3493 | CG12182-RC | 2489..3302 | 19..832 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596033..2596846 | 832..19 | 4070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:39:20 has no hits.
BO14207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:01 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 98..924 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:09 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 98..924 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:56:13 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 187..1013 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:28 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 187..1013 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:28 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2596033..2596849 | 15..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:56:13 Download gff for
BO14207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2596033..2596849 | 15..832 | 99 | | Minus |
BO14207.5prime Sequence
876 bp (796 high quality bases) assembled on 2006-05-29
> BO14207.5prime
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTCAATTCCGGATTGGTACCGCAGTTTATC
TGCCGCAAGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAACCAAGAG
GATGTTGGCCGACATGAATGCGGTGTGTGCCAAGGAACAGGCACGTTTGC
TGGAGCTGTGCCGCGGTATCAAGGGTTTCACCAGGGCATCCGTCCAATCA
AGTGGTCCGCCGCCAATGCCGGGTATGCGGGTGATGGAGCAGGCCGAGCG
AAATGAGATCCTCGAGGGACTGCGACTGAGCCTGACCGAGATGACCAAGC
AGTATCAGTCGATGTCGCTCCTTATCGACAGCATCGCCCAGCGGCAGCGC
AAAAGCAAGCTGGAGTCCGATCTTCG
BO14207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 924 | CG16984-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 1162 | CG16984-RA | 90..949 | 17..876 | 4285 | 99.9 | Plus |
CG12182-RC | 3493 | CG12182-RC | 2550..3303 | 876..123 | 3755 | 99.9 | Minus |
CG12182-RC | 3493 | CG12182-RC | 3360..3465 | 122..17 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596032..2596785 | 123..876 | 3755 | 99.9 | Plus |
3L | 28110227 | 3L | 2595870..2595975 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:32:04 has no hits.
BO14207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:02 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:10 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:31:54 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..949 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:19 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..949 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:19 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
3L | 2596032..2596785 | 123..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:31:54 Download gff for
BO14207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
arm_3L | 2596032..2596785 | 123..876 | 99 | | Plus |
BO14207.complete Sequence
955 bp assembled on 2006-10-11
GenBank Submission: FJ633038
> BO14207.complete
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTCAATTCCGGATTGGTACCGCAGTTTATC
TGCCGCAAGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAACCAAGAG
GATGTTGGCCGACATGAATGCGGTGTGTGCCAAGGAACAGGCACGTTTGC
TGGAGCTGTGCCGCGGTATCAAGGGTTTCACCAGGGCATCCGTCCAATCA
AGTGGTCCGCCGCCAATGCCGGGTATGCGGGTGATGGAGCAGGCCGAGCG
AAATGAGATCCTCGAGGGACTGCGACTGAGCCTGACCGAGATGACCAAGC
AGTATCAGTCGATGTCGCTCCTTATCGACAGCATCGCCAAGCGGCAGCGC
AAAAGCAAGCTGGAGTCCGATCTTCGCCAGGTGGAGCAGGACATTCTGCT
AATCGAGACCACTCCCATTATCTATGTTTCCGAGTACGCAAGCTTTCTAG
ACCAT
BO14207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 924 | CG16984-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 1162 | CG16984-RA | 90..1010 | 17..937 | 4605 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 2489..3303 | 937..123 | 4075 | 100 | Minus |
CG12182-RC | 3493 | CG12182-RC | 3360..3465 | 122..17 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596032..2596846 | 123..937 | 4075 | 100 | Plus |
3L | 28110227 | 3L | 2595870..2595975 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:00:47 has no hits.
BO14207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:07:20 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 1..924 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:46 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 58..981 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:08 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..1010 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:07:21 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 58..981 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:23 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..1010 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:23 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
3L | 2596032..2596846 | 123..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:08 Download gff for
BO14207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
arm_3L | 2596032..2596846 | 123..939 | 99 | | Plus |
BO14207.pep Sequence
Translation from 16 to 955
> BO14207.pep
MSLVYITHHDENILECEQDFVKAQGPKESIFVYKNPVVERAAKYAKRLRE
RFNEEDKKLSIILQNDGTRVLTEAKKSAHRTMGCAHTPIDPPCAYLRKSQ
GIKWRRENTHKCPKMPPMPPLPPPGSGGKKPAMVPNFIKRNKICAGQTVP
CPPPPRYVDTPVGARHDLLNSGLVPQFICRKDFGKVPVYLKKTKRMLADM
NAVCAKEQARLLELCRGIKGFTRASVQSSGPPPMPGMRVMEQAERNEILE
GLRLSLTEMTKQYQSMSLLIDSIAKRQRKSKLESDLRQVEQDILLIETTP
IIYVSEYASFLDH
BO14207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 307 | CG16984-PA | 1..307 | 1..307 | 1617 | 100 | Plus |