Clone BO14214 Report

Search the DGRC for BO14214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG8584-RA
Protein status:BO14214.pep: validated full length
Sequenced Size:913

Clone Sequence Records

BO14214.3prime Sequence

911 bp (765 high quality bases) assembled on 2006-05-29

> BO14214.3prime
ATGGTCTAGAAAGCTTGCATGATGGGATGAAATGGTAGATCGGTTATAAT
AATGGCGGATAACGCGCCGACCGAGAATGGAGCGAACGTCCTTGGTGAAG
CGCAGGGCATCGAGGAAGGGCAGCATCTTCAGGAGCTCCGTGTCGTCGGG
GTCGTAGATGAAGGTCTTAATGGGAATAGCGTTGTCGGGAAAGTCGCGGT
ATGCGTACGGCGAGTTGTCGATGATTAAAACGCCGCTCATGTCAGGGGTG
ACCAATGTCAGGTCCTTGGAGACCATTGGCGAGGAGGCTCGACAGTGCTG
GCGATAGAAGCGGCGAGTAATCAATCCTCGCCCCGCGTCCAGATGGTCCA
CAACCTGGGCGGCATAGACCTCCAGGCTGGCCGTATAGATCACCAGGTCG
TACCACTTGGACACAAAGTCCAGGAACTCGTCTACATGCGGCCGCTTGAA
GACCCGGAAAACGATAGGTTCCATCCCGTCGATGGAAATATTGAGCACAT
AGTCCGGTTGTGCGTGTTCGGGCAACTGGCTGCATCCCACGTTGTCGTGG
GTGTCCGGATCGAGGTAACATGAGTGCACCAGAGTCTCATCCAGGTCCAG
GACCAGGGTCTTCCGACCAACCACGGCCAGTCTGTGGGCCATGTCCTGGG
ACACAGACACTTCCCGGTAGCTAAGCCCCAGATATGTACGTAGGATCGTA
CATGCCTTCTCCGCCACACGGGCCAGCAGGCGTCTGATGTAGGTGCCCAG
GTCGCTGGAGAGCAGGATCAAGACGAGCCCCCGGCGATCGGAGCTCGAAC
GCGATCTCTGGAGATTGCTGACCACAGCGACGGCAAACTGACCTGATGGA
GCGAGCTTGTCTAAATCAGCAGACTGTGCCGGCAGCTGACTGACCATGTC
GACTGATAACT

BO14214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-PA 882 CG8584-RA 1..879 897..19 4295 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-RA 1103 CG8584-RA 167..1045 897..19 4335 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8700750..8701628 19..897 4335 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 16:02:44 has no hits.

BO14214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:07 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-PA 1..882 16..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:18 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-PA 1..882 16..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:13 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1049 15..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:23 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1049 15..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:23 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8700746..8701628 15..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:13 Download gff for BO14214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4588251..4589133 15..897 99   Plus

BO14214.5prime Sequence

843 bp (796 high quality bases) assembled on 2006-05-29

> BO14214.5prime
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAATGGTCTCCAAGG
ACCTGACATTGGTCACCCCTGACATGAGCGGCGTTTTAATCATCGACAAC
TCGCCGTACGCATACCGCGACTTTCCCGACAACGCTATTCCCATTAAGAC
CTTCATCTACGACCCCGACGACACGGAGCTCCTGAAGATGCTGCCCTTCC
TCGATGCCCTGCGCTTCACAAAGGACGTTCGCTCCATTCTCGG

BO14214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-PA 882 CG8584-RA 1..827 17..843 4035 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-RA 1103 CG8584-RA 167..993 17..843 4075 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8700802..8701628 843..17 4075 99.5 Minus
Blast to na_te.dros performed on 2015-02-02 08:22:24 has no hits.

BO14214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:08 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:18 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:47:56 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..993 17..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:19:57 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..993 17..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:19:57 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8700802..8701628 17..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:47:56 Download gff for BO14214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4588307..4589133 17..843 99   Minus

BO14214.complete Sequence

913 bp assembled on 2006-10-11

GenBank Submission: FJ633039

> BO14214.complete
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAATGGTCTCCAAGG
ACCTGACATTGGTCACCCCTGACATGAGCGGCGTTTTAATCATCGACAAC
TCGCCGTACGCATACCGCGACTTTCCCGACAACGCTATTCCCATTAAGAC
CTTCATCTACGACCCCGACGACACGGAGCTCCTGAAGATGCTGCCCTTCC
TCGATGCCCTGCGCTTCACCAAGGACGTTCGCTCCATTCTCGGTCGGCGC
GTTATCCGCCATTATTATAACCGATCTACCATTTCATCCCATCATGCAAG
CTTTCTAGACCAT

BO14214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-RA 882 CG8584-PA 1..879 17..895 4350 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-RA 1103 CG8584-RA 167..1045 17..895 4350 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8700750..8701628 895..17 4350 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 07:34:19 has no hits.

BO14214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:34 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:28 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1049 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:06 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1045 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:35 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1049 17..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:12 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
CG8584-RA 167..1045 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:12 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8700747..8701628 17..897 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:06 Download gff for BO14214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4588252..4589133 17..897 99   Minus

BO14214.pep Sequence

Translation from 16 to 913

> BO14214.pep
MVSQLPAQSADLDKLAPSGQFAVAVVSNLQRSRSSSDRRGLVLILLSSDL
GTYIRRLLARVAEKACTILRTYLGLSYREVSVSQDMAHRLAVVGRKTLVL
DLDETLVHSCYLDPDTHDNVGCSQLPEHAQPDYVLNISIDGMEPIVFRVF
KRPHVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGLITRRFYRQ
HCRASSPMVSKDLTLVTPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDP
DDTELLKMLPFLDALRFTKDVRSILGRRVIRHYYNRSTISSHHASFLDH

BO14214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8584-PA 293 CG8584-PA 1..293 1..293 1502 100 Plus
Dd-PB 240 CG1696-PB 31..237 69..282 526 50.7 Plus
Dd-PA 243 CG1696-PA 37..240 72..282 520 50.9 Plus
CG12078-PB 236 CG12078-PB 20..227 63..277 370 40.3 Plus
CG12078-PA 253 CG12078-PA 37..244 63..277 370 40.3 Plus