Clone Sequence Records
BO14214.3prime Sequence
911 bp (765 high quality bases) assembled on 2006-05-29
> BO14214.3prime
ATGGTCTAGAAAGCTTGCATGATGGGATGAAATGGTAGATCGGTTATAAT
AATGGCGGATAACGCGCCGACCGAGAATGGAGCGAACGTCCTTGGTGAAG
CGCAGGGCATCGAGGAAGGGCAGCATCTTCAGGAGCTCCGTGTCGTCGGG
GTCGTAGATGAAGGTCTTAATGGGAATAGCGTTGTCGGGAAAGTCGCGGT
ATGCGTACGGCGAGTTGTCGATGATTAAAACGCCGCTCATGTCAGGGGTG
ACCAATGTCAGGTCCTTGGAGACCATTGGCGAGGAGGCTCGACAGTGCTG
GCGATAGAAGCGGCGAGTAATCAATCCTCGCCCCGCGTCCAGATGGTCCA
CAACCTGGGCGGCATAGACCTCCAGGCTGGCCGTATAGATCACCAGGTCG
TACCACTTGGACACAAAGTCCAGGAACTCGTCTACATGCGGCCGCTTGAA
GACCCGGAAAACGATAGGTTCCATCCCGTCGATGGAAATATTGAGCACAT
AGTCCGGTTGTGCGTGTTCGGGCAACTGGCTGCATCCCACGTTGTCGTGG
GTGTCCGGATCGAGGTAACATGAGTGCACCAGAGTCTCATCCAGGTCCAG
GACCAGGGTCTTCCGACCAACCACGGCCAGTCTGTGGGCCATGTCCTGGG
ACACAGACACTTCCCGGTAGCTAAGCCCCAGATATGTACGTAGGATCGTA
CATGCCTTCTCCGCCACACGGGCCAGCAGGCGTCTGATGTAGGTGCCCAG
GTCGCTGGAGAGCAGGATCAAGACGAGCCCCCGGCGATCGGAGCTCGAAC
GCGATCTCTGGAGATTGCTGACCACAGCGACGGCAAACTGACCTGATGGA
GCGAGCTTGTCTAAATCAGCAGACTGTGCCGGCAGCTGACTGACCATGTC
GACTGATAACT
BO14214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-PA | 882 | CG8584-RA | 1..879 | 897..19 | 4295 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-RA | 1103 | CG8584-RA | 167..1045 | 897..19 | 4335 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8700750..8701628 | 19..897 | 4335 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:02:44 has no hits.
BO14214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:07 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-PA | 1..882 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:18 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-PA | 1..882 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:13 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1049 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:23 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1049 | 15..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:23 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8700746..8701628 | 15..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:13 Download gff for
BO14214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4588251..4589133 | 15..897 | 99 | | Plus |
BO14214.5prime Sequence
843 bp (796 high quality bases) assembled on 2006-05-29
> BO14214.5prime
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAATGGTCTCCAAGG
ACCTGACATTGGTCACCCCTGACATGAGCGGCGTTTTAATCATCGACAAC
TCGCCGTACGCATACCGCGACTTTCCCGACAACGCTATTCCCATTAAGAC
CTTCATCTACGACCCCGACGACACGGAGCTCCTGAAGATGCTGCCCTTCC
TCGATGCCCTGCGCTTCACAAAGGACGTTCGCTCCATTCTCGG
BO14214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-PA | 882 | CG8584-RA | 1..827 | 17..843 | 4035 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-RA | 1103 | CG8584-RA | 167..993 | 17..843 | 4075 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8700802..8701628 | 843..17 | 4075 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:22:24 has no hits.
BO14214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:08 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:18 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:47:56 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..993 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:19:57 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..993 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:19:57 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8700802..8701628 | 17..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:47:56 Download gff for
BO14214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4588307..4589133 | 17..843 | 99 | | Minus |
BO14214.complete Sequence
913 bp assembled on 2006-10-11
GenBank Submission: FJ633039
> BO14214.complete
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAATGGTCTCCAAGG
ACCTGACATTGGTCACCCCTGACATGAGCGGCGTTTTAATCATCGACAAC
TCGCCGTACGCATACCGCGACTTTCCCGACAACGCTATTCCCATTAAGAC
CTTCATCTACGACCCCGACGACACGGAGCTCCTGAAGATGCTGCCCTTCC
TCGATGCCCTGCGCTTCACCAAGGACGTTCGCTCCATTCTCGGTCGGCGC
GTTATCCGCCATTATTATAACCGATCTACCATTTCATCCCATCATGCAAG
CTTTCTAGACCAT
BO14214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-RA | 882 | CG8584-PA | 1..879 | 17..895 | 4350 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-RA | 1103 | CG8584-RA | 167..1045 | 17..895 | 4350 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8700750..8701628 | 895..17 | 4350 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:34:19 has no hits.
BO14214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:34 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:28 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1049 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:06 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1045 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:35 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1049 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:12 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8584-RA | 167..1045 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:12 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8700747..8701628 | 17..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:06 Download gff for
BO14214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4588252..4589133 | 17..897 | 99 | | Minus |
BO14214.pep Sequence
Translation from 16 to 913
> BO14214.pep
MVSQLPAQSADLDKLAPSGQFAVAVVSNLQRSRSSSDRRGLVLILLSSDL
GTYIRRLLARVAEKACTILRTYLGLSYREVSVSQDMAHRLAVVGRKTLVL
DLDETLVHSCYLDPDTHDNVGCSQLPEHAQPDYVLNISIDGMEPIVFRVF
KRPHVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGLITRRFYRQ
HCRASSPMVSKDLTLVTPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDP
DDTELLKMLPFLDALRFTKDVRSILGRRVIRHYYNRSTISSHHASFLDH
BO14214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8584-PA | 293 | CG8584-PA | 1..293 | 1..293 | 1502 | 100 | Plus |
Dd-PB | 240 | CG1696-PB | 31..237 | 69..282 | 526 | 50.7 | Plus |
Dd-PA | 243 | CG1696-PA | 37..240 | 72..282 | 520 | 50.9 | Plus |
CG12078-PB | 236 | CG12078-PB | 20..227 | 63..277 | 370 | 40.3 | Plus |
CG12078-PA | 253 | CG12078-PA | 37..244 | 63..277 | 370 | 40.3 | Plus |