Clone Sequence Records
BO14217.5prime Sequence
793 bp (738 high quality bases) assembled on 2006-05-29
> BO14217.5prime
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCAGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAGCTTCGC
TCTATGAGAAGTTCACCTCGCCGAATGTCCTGGCAGTGGCTAGCAGTCTT
GTTGGCGAGGATTCCTTATCGCACCATGTGGATCCATCGATTGGAGTCTA
CATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGAG
BO14217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-PA | 1068 | CG4406-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-RA | 1203 | CG4406-RA | 69..845 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2008708..2009296 | 605..17 | 2945 | 100 | Minus |
X | 23542271 | X | 2008514..2008632 | 721..603 | 595 | 100 | Minus |
X | 23542271 | X | 2008390..2008462 | 793..721 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:25:31 has no hits.
BO14217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:13 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:26 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:53 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 63..845 | 11..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:34 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 63..845 | 11..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:34 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2008514..2008631 | 604..721 | 100 | <- | Minus |
X | 2008390..2008461 | 722..793 | 100 | <- | Minus |
X | 2008710..2009302 | 11..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:53 Download gff for
BO14217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1902423..1902494 | 722..793 | 100 | <- | Minus |
arm_X | 1902547..1902664 | 604..721 | 100 | <- | Minus |
arm_X | 1902743..1903335 | 11..603 | 99 | | Minus |
BO14217.3prime Sequence
673 bp (671 high quality bases) assembled on 2006-05-29
> BO14217.3prime
ATGGTCTAGAAAGCTTGCTTTAAAAAGCTCGGAAGGAAACTGTGACTCCA
TCACGATTTTGAAGGGCTTTTTGGTCACCATCTTATCTTTGTCGAAAATG
AAATCATCCTCATTGGCCAAGGTCACATTGATGCGATCGGTGGATACCCG
TGTGGGACGTATGGCTCCAAAGAAGTCTGTGATGGGCACCTTGTGCGGAT
CCCGGGGGTACAGATCCTTGCGCACTCCCACTGTCGAAATGCACACTCTC
TTGGGGCACACTTGCAGAAATTCGCCTATGGTCCGTTTGCTAAAGGGCTG
CACCTTCTCCAGGAACTCCAAGGCGTAGTAGGTGTACCGGTCTATCATGT
AGACTCCAATCGATGGATCCACATGGTGCGATAAGGAATCCTCGCCAACA
AGACTGCTAGCCACTGCCAGGACATTCGGCGAGGTGAACTTCTCATAGAG
CGAAGCTGCTTGGCAAGTGTCCACCATGAAGAATAGCTCATTGTACCGCT
TTTTCTCCCACATCTGTTGGATGCCGTCGGCCAACTCCTGGCTGGTTATC
TCCTCCGAGTCCTGGAACTTGAGGAATCCATCGCCGCCGTGTCCGGTTAG
GTAGATGAGCACATTGCTGCCCGCGTCCGAGAGCAGCTTCTTCGAGCGCG
CCGTGCCGTTCTGGGTGCGCCCA
BO14217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-PA | 1068 | CG4406-RA | 411..1065 | 673..19 | 3275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-RA | 1203 | CG4406-RA | 479..1133 | 673..19 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2008708..2008886 | 495..673 | 895 | 100 | Plus |
X | 23542271 | X | 2008129..2008289 | 107..267 | 805 | 100 | Plus |
X | 23542271 | X | 2008514..2008632 | 379..497 | 595 | 100 | Plus |
X | 23542271 | X | 2008351..2008462 | 268..379 | 560 | 100 | Plus |
X | 23542271 | X | 2007981..2008068 | 19..106 | 440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 19:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1688..1772 | 334..246 | 128 | 65.2 | Minus |
BO14217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:12 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-PA | 412..1068 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:24 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-PA | 412..1068 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:54:40 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 480..1133 | 19..672 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:05 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 480..1133 | 19..672 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:05 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2007981..2008068 | 19..106 | 100 | <- | Plus |
X | 2008710..2008885 | 497..672 | 100 | | Plus |
X | 2008129..2008289 | 107..267 | 100 | <- | Plus |
X | 2008351..2008461 | 268..378 | 100 | <- | Plus |
X | 2008514..2008631 | 379..496 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:54:40 Download gff for
BO14217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1902547..1902664 | 379..496 | 100 | <- | Plus |
arm_X | 1902384..1902494 | 268..378 | 100 | <- | Plus |
arm_X | 1902014..1902101 | 19..106 | 100 | <- | Plus |
arm_X | 1902162..1902322 | 107..267 | 100 | <- | Plus |
arm_X | 1902743..1902918 | 497..672 | 100 | | Plus |
BO14217.complete Sequence
1099 bp assembled on 2006-10-11
GenBank Submission: FJ633040
> BO14217.complete
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCAGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAGCTTCGC
TCTATGAGAAGTTCACCTCGCCGAATGTCCTGGCAGTGGCTAGCAGTCTT
GTTGGCGAGGATTCCTTATCGCACCATGTGGATCCATCGATTGGAGTCTA
CATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGAGAAGGTGC
AGCCCTTTAGCAAACGGACCATAGGCGAATTTCTGCAAGTGTGCCCCAAG
AGAGTGTGCATTTCGACAGTGGGAGTGCGCAAGGATCTGTACCCCCGGGA
TCCGCACAAGGTGCCCATCACAGACTTCTTTGGAGCCATACGTCCCACAC
GGGTATCCACCGATCGCATCAATGTGACCTTGGCCAATGAGGATGATTTC
ATTTTCGACAAAGATAAGATGGTGACCAAAAAGCCCTTCAAAATCGTGAT
GGAGTCACAGTTTCCTTCCGAGCTTTTTAAAGCAAGCTTTCTAGACCAT
BO14217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-RA | 1068 | CG4406-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-RA | 1203 | CG4406-RA | 69..1133 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2008708..2009296 | 605..17 | 2945 | 100 | Minus |
X | 23542271 | X | 2008129..2008289 | 993..833 | 805 | 100 | Minus |
X | 23542271 | X | 2008514..2008632 | 721..603 | 595 | 100 | Minus |
X | 23542271 | X | 2008351..2008462 | 832..721 | 560 | 100 | Minus |
X | 23542271 | X | 2007981..2008068 | 1081..994 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1688..1772 | 766..854 | 128 | 65.2 | Plus |
BO14217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:15 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 1..1068 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:22 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 42..1112 | 11..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 75..1133 | 23..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:15 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 42..1112 | 11..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:37 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4406-RA | 75..1133 | 23..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:37 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2008514..2008631 | 604..721 | 100 | <- | Minus |
X | 2007979..2008068 | 994..1083 | 97 | <- | Minus |
X | 2008129..2008289 | 833..993 | 100 | <- | Minus |
X | 2008351..2008461 | 722..832 | 100 | <- | Minus |
X | 2008710..2009290 | 23..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:33 Download gff for
BO14217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1902012..1902101 | 994..1083 | 97 | <- | Minus |
arm_X | 1902162..1902322 | 833..993 | 100 | <- | Minus |
arm_X | 1902384..1902494 | 722..832 | 100 | <- | Minus |
arm_X | 1902547..1902664 | 604..721 | 100 | <- | Minus |
arm_X | 1902743..1903323 | 23..603 | 100 | | Minus |
BO14217.pep Sequence
Translation from 16 to 1099
> BO14217.pep
MFNIMLVKFVVIFALILASCRVEADNTSVLPEGFVDAAQRSTHTNNWAVL
VDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRP
GQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRLLTGRTQNGTARSKKL
LSDAGSNVLIYLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNEL
FFMVDTCQAASLYEKFTSPNVLAVASSLVGEDSLSHHVDPSIGVYMIDRY
TYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTVGVRKDLYPRDPHKVP
ITDFFGAIRPTRVSTDRINVTLANEDDFIFDKDKMVTKKPFKIVMESQFP
SELFKASFLDH
BO14217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4406-PA | 355 | CG4406-PA | 1..355 | 1..355 | 1845 | 100 | Plus |