Clone BO14217 Report

Search the DGRC for BO14217

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG4406-RA
Protein status:BO14217.pep: validated full length
Sequenced Size:1099

Clone Sequence Records

BO14217.5prime Sequence

793 bp (738 high quality bases) assembled on 2006-05-29

> BO14217.5prime
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCAGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAGCTTCGC
TCTATGAGAAGTTCACCTCGCCGAATGTCCTGGCAGTGGCTAGCAGTCTT
GTTGGCGAGGATTCCTTATCGCACCATGTGGATCCATCGATTGGAGTCTA
CATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGAG

BO14217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-PA 1068 CG4406-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-RA 1203 CG4406-RA 69..845 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2008708..2009296 605..17 2945 100 Minus
X 23542271 X 2008514..2008632 721..603 595 100 Minus
X 23542271 X 2008390..2008462 793..721 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:25:31 has no hits.

BO14217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:13 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:26 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:53 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 63..845 11..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:34 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 63..845 11..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:34 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2008514..2008631 604..721 100 <- Minus
X 2008390..2008461 722..793 100 <- Minus
X 2008710..2009302 11..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:53 Download gff for BO14217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1902423..1902494 722..793 100 <- Minus
arm_X 1902547..1902664 604..721 100 <- Minus
arm_X 1902743..1903335 11..603 99   Minus

BO14217.3prime Sequence

673 bp (671 high quality bases) assembled on 2006-05-29

> BO14217.3prime
ATGGTCTAGAAAGCTTGCTTTAAAAAGCTCGGAAGGAAACTGTGACTCCA
TCACGATTTTGAAGGGCTTTTTGGTCACCATCTTATCTTTGTCGAAAATG
AAATCATCCTCATTGGCCAAGGTCACATTGATGCGATCGGTGGATACCCG
TGTGGGACGTATGGCTCCAAAGAAGTCTGTGATGGGCACCTTGTGCGGAT
CCCGGGGGTACAGATCCTTGCGCACTCCCACTGTCGAAATGCACACTCTC
TTGGGGCACACTTGCAGAAATTCGCCTATGGTCCGTTTGCTAAAGGGCTG
CACCTTCTCCAGGAACTCCAAGGCGTAGTAGGTGTACCGGTCTATCATGT
AGACTCCAATCGATGGATCCACATGGTGCGATAAGGAATCCTCGCCAACA
AGACTGCTAGCCACTGCCAGGACATTCGGCGAGGTGAACTTCTCATAGAG
CGAAGCTGCTTGGCAAGTGTCCACCATGAAGAATAGCTCATTGTACCGCT
TTTTCTCCCACATCTGTTGGATGCCGTCGGCCAACTCCTGGCTGGTTATC
TCCTCCGAGTCCTGGAACTTGAGGAATCCATCGCCGCCGTGTCCGGTTAG
GTAGATGAGCACATTGCTGCCCGCGTCCGAGAGCAGCTTCTTCGAGCGCG
CCGTGCCGTTCTGGGTGCGCCCA

BO14217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-PA 1068 CG4406-RA 411..1065 673..19 3275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-RA 1203 CG4406-RA 479..1133 673..19 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2008708..2008886 495..673 895 100 Plus
X 23542271 X 2008129..2008289 107..267 805 100 Plus
X 23542271 X 2008514..2008632 379..497 595 100 Plus
X 23542271 X 2008351..2008462 268..379 560 100 Plus
X 23542271 X 2007981..2008068 19..106 440 100 Plus
Blast to na_te.dros performed 2015-02-02 19:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1688..1772 334..246 128 65.2 Minus

BO14217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:12 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-PA 412..1068 18..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:24 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-PA 412..1068 18..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:54:40 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 480..1133 19..672 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:05 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 480..1133 19..672 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:05 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2007981..2008068 19..106 100 <- Plus
X 2008710..2008885 497..672 100   Plus
X 2008129..2008289 107..267 100 <- Plus
X 2008351..2008461 268..378 100 <- Plus
X 2008514..2008631 379..496 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:54:40 Download gff for BO14217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1902547..1902664 379..496 100 <- Plus
arm_X 1902384..1902494 268..378 100 <- Plus
arm_X 1902014..1902101 19..106 100 <- Plus
arm_X 1902162..1902322 107..267 100 <- Plus
arm_X 1902743..1902918 497..672 100   Plus

BO14217.complete Sequence

1099 bp assembled on 2006-10-11

GenBank Submission: FJ633040

> BO14217.complete
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCAGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAGCTTCGC
TCTATGAGAAGTTCACCTCGCCGAATGTCCTGGCAGTGGCTAGCAGTCTT
GTTGGCGAGGATTCCTTATCGCACCATGTGGATCCATCGATTGGAGTCTA
CATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGAGAAGGTGC
AGCCCTTTAGCAAACGGACCATAGGCGAATTTCTGCAAGTGTGCCCCAAG
AGAGTGTGCATTTCGACAGTGGGAGTGCGCAAGGATCTGTACCCCCGGGA
TCCGCACAAGGTGCCCATCACAGACTTCTTTGGAGCCATACGTCCCACAC
GGGTATCCACCGATCGCATCAATGTGACCTTGGCCAATGAGGATGATTTC
ATTTTCGACAAAGATAAGATGGTGACCAAAAAGCCCTTCAAAATCGTGAT
GGAGTCACAGTTTCCTTCCGAGCTTTTTAAAGCAAGCTTTCTAGACCAT

BO14217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-RA 1068 CG4406-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-RA 1203 CG4406-RA 69..1133 17..1081 5325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2008708..2009296 605..17 2945 100 Minus
X 23542271 X 2008129..2008289 993..833 805 100 Minus
X 23542271 X 2008514..2008632 721..603 595 100 Minus
X 23542271 X 2008351..2008462 832..721 560 100 Minus
X 23542271 X 2007981..2008068 1081..994 440 100 Minus
Blast to na_te.dros performed 2014-11-27 14:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1688..1772 766..854 128 65.2 Plus

BO14217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:15 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:22 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 42..1112 11..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 75..1133 23..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:15 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 42..1112 11..1081 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:37 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 75..1133 23..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:37 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
X 2008514..2008631 604..721 100 <- Minus
X 2007979..2008068 994..1083 97 <- Minus
X 2008129..2008289 833..993 100 <- Minus
X 2008351..2008461 722..832 100 <- Minus
X 2008710..2009290 23..603 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:33 Download gff for BO14217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1902012..1902101 994..1083 97 <- Minus
arm_X 1902162..1902322 833..993 100 <- Minus
arm_X 1902384..1902494 722..832 100 <- Minus
arm_X 1902547..1902664 604..721 100 <- Minus
arm_X 1902743..1903323 23..603 100   Minus

BO14217.pep Sequence

Translation from 16 to 1099

> BO14217.pep
MFNIMLVKFVVIFALILASCRVEADNTSVLPEGFVDAAQRSTHTNNWAVL
VDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRP
GQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRLLTGRTQNGTARSKKL
LSDAGSNVLIYLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNEL
FFMVDTCQAASLYEKFTSPNVLAVASSLVGEDSLSHHVDPSIGVYMIDRY
TYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTVGVRKDLYPRDPHKVP
ITDFFGAIRPTRVSTDRINVTLANEDDFIFDKDKMVTKKPFKIVMESQFP
SELFKASFLDH

BO14217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-PA 355 CG4406-PA 1..355 1..355 1845 100 Plus