Clone Sequence Records
BO14219.3prime Sequence
847 bp (733 high quality bases) assembled on 2006-05-29
> BO14219.3prime
ATGGTCTAGAAAGCTTGCTAGCTGCACCTTGACCATGTTCCCATTGCTCC
TTTTCTTACTGGCCAATTCTGCATCAAGGTATACACGATTTGTGAGCAGA
GGACATCCTTGGACTATTAACACACTAAGGTTGGGAATTCCTATGACCAG
TTCGATGACAACCTCATTAGTGATATAGGGTGAATTGCTGAGGTCCAGCG
TCTCAAGAAAAGTTAGATTCCTCAATCTTAAGAGGTCATTGGGCCGGTAT
GGCTGATTCGGCATTTTCAGAACACGCAGCTGCCGAAATCTCGATATAAT
CGACAGGGCATTTGCGCTAACAAAGCCACTCGGTGCATCTGAAAACATCA
GGTTTCGCAGAAAGGGCACATCCAATAGGGAAATCAGCATCCAGTCGCTG
ACCTTACAGCGAATTGTGTCTGTGGAGTGAGCTTTAATGACCAACGACTG
CAGATAGCGCAGCTCACCCAGCCTATACTCATCCCGGTTTAGGGAGCAAA
TTGATATCTCGACCATCACCAGCAAGGGACAAGCCAGCACCAGGTCACGA
TAGATATGCCAGTGCCCGCCGGGCATCAGGTCCGAGGCACGCAGCTCGCG
TAGTCGTGGTATACGGTTCAGGAATATTAGTTGATTCGGGCACAAATTCC
GGCAGCCGGTTATATAAAGGGACAACAACGAAGTTGGAAGACTCATCAAA
CAGCTCCCAGTCAATCGATCGTTGTATCTCAAATCCAATGTCTCCAGATG
AGTCAAGAACTCCCAGCCCACAAGGTTCTCATCATTGACCTGACAACGAC
GCAAGCTAACATAGGTCAAGTTGCTGAAACTGGTTTCGGGAGCGTTG
BO14219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 1200 | CG15056-RA | 369..1197 | 847..19 | 4070 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 473..1301 | 847..19 | 4100 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18415960..18416788 | 847..19 | 4100 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:55:36 has no hits.
BO14219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:16 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 369..1200 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:30 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 369..1200 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:37 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 375..1203 | 19..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:55 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 473..1301 | 19..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:55 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18415960..18416788 | 19..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:37 Download gff for
BO14219.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18309993..18310821 | 19..847 | 99 | | Minus |
BO14219.5prime Sequence
889 bp (752 high quality bases) assembled on 2006-05-29
> BO14219.5prime
GAAGTTATCAGTCGACATGAACTTCATCTCGTTCAGCGTAATTAGCCGCT
TTGACTTTTTTTGGTTGGACGTGCTTAAGCAATTGGATCTGAAGTCTCGC
ATTAGCTTTGCAGCCAGTTGCGATATGTTTGAGAACATCTATGTTAGGAG
TTCTCCTCTACGCCTGAGCCGCGTAGTTAATTTGGAGGAAATGATTGAGT
TCTCATTGCTTGAAACCAAACTATTTGTGGAACTTTCGGGTTCTGACATT
GAGATTATACGCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGA
TTTCATACGCCTGATGTCGATCCGGCTAACGAAGGTGAATGAGATTGCTC
TCGAGGGATTCCAACTCACGCAATACAAGTGGTTCAACGCTCCCGAAACC
AGCTTCAGCAACTTGACCTATGTTAGCTTGCGTCGTTGTCAGCTCAATGA
TGAGAACCTTGTGGGCTGGGAGTTCTTGACTCATCTGGAGACATTGGATC
TGAGATACAACGATCGATTGACTGGGAGCTGTTTGATGAGTCTTCCAACT
TCGTTGTTGTCCCTTTATATAACCGGCTGCCGGAATTTGTGCCCGAATCA
ACTAATATTCCTGAACCGTATACCACGACTACGCGAGCTGCGTGCCTCGG
ACCTGATGCCCGGCGGGCACTGGCATATCTATCGTGACCTGGTGCTGGCT
TGTCCCTTGCTGGTGATGGTCGAGATATCAATTTGCTCCCTAAACCGGGA
TGAGTATAGGCTGGGTGAGCTGCGCTATCTGCAGTCGTTGGTCATTAAAG
CTCACTCCACAGACACAATTCGCTGTAAGGTCAGCGACTGGATGCTGATT
TCCCTATTGGATGTGCCCTTTCTGCGAAACCTGATGTTT
BO14219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 1200 | CG15056-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 105..977 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18415608..18416464 | 33..889 | 4285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:23:47 has no hits.
BO14219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:17 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:31 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:18 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 4..879 | 15..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:04 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 105..977 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:04 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18415519..18415538 | 17..36 | 100 | -> | Plus |
| X | 18415612..18416464 | 37..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:18 Download gff for
BO14219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18309552..18309571 | 17..36 | 100 | -> | Plus |
| arm_X | 18309645..18310497 | 37..889 | 100 | | Plus |
BO14219.complete Sequence
1231 bp assembled on 2006-10-11
GenBank Submission: FJ633041
> BO14219.complete
GAAGTTATCAGTCGACATGAACTTCATCTCGTTCAGCGTAATTAGCCGCT
TTGACTTTTTTTGGTTGGACGTGCTTAAGCAATTGGATCTGAAGTCTCGC
ATTAGCTTTGCAGCCAGTTGCGATATGTTTGAGAACATCTATGTTAGGAG
TTCTCCTCTACGCCTGAGCCGCGTAGTTAATTTGGAGGAAATGATTGAGT
TCTCATTGCTTGAAACCAAACTATTTGTGGAACTTTCGGGTTCTGACATT
GAGATTATACGCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGA
TTTCATACGCCTGATGTCGATCCGGCTAACGAAGGTGAATGAGATTGCTC
TCGAGGGATTCCAACTCACGCAATACAAGTGGTTCAACGCTCCCGAAACC
AGCTTCAGCAACTTGACCTATGTTAGCTTGCGTCGTTGTCAGCTCAATGA
TGAGAACCTTGTGGGCTGGGAGTTCTTGACTCATCTGGAGACATTGGATC
TGAGATACAACGATCGATTGACTGGGAGCTGTTTGATGAGTCTTCCAACT
TCGTTGTTGTCCCTTTATATAACCGGCTGCCGGAATTTGTGCCCGAATCA
ACTAATATTCCTGAACCGTATACCACGACTACGCGAGCTGCGTGCCTCGG
ACCTGATGCCCGGCGGGCACTGGCATATCTATCGTGACCTGGTGCTGGCT
TGTCCCTTGCTGGTGATGGTCGAGATATCAATTTGCTCCCTAAACCGGGA
TGAGTATAGGCTGGGTGAGCTGCGCTATCTGCAGTCGTTGGTCATTAAAG
CTCACTCCACAGACACAATTCGCTGTAAGGTCAGCGACTGGATGCTGATT
TCCCTATTGGATGTGCCCTTTCTGCGAAACCTGATGTTTTCAGATGCACC
GAGTGGCTTTGTTAGCGCAAATGCCCTGTCGATTATATCGAGATTTCGGC
AGCTGCGTGTTCTGAAAATGCCGAATCAGCCATACCGGCCCAATGACCTC
TTAAGATTGAGGAATCTAACTTTTCTTGAGACGCTGGACCTCAGCAATTC
ACCCTATATCACTAATGAGGTTGTCATCGAACTGGTCATAGGAATTCCCA
ACCTTAGTGTGTTAATAGTCCAAGGATGTCCTCTGCTCACAAATCGTGTA
TACCTTGATGCAGAATTGGCCAGTAAGAAAAGGAGCAATGGGAACATGGT
CAAGGTGCAGCTAGCAAGCTTTCTAGACCAT
BO14219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1200 | CG15056-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 105..1301 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18415608..18416788 | 33..1213 | 5905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:18 has no hits.
BO14219.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:16 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 1..1200 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:24 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 4..1203 | 15..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:26 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 7..1203 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:17 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 4..1203 | 15..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:19 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 105..1301 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:19 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18415519..18415538 | 17..36 | 100 | -> | Plus |
| X | 18415612..18416788 | 37..1215 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:26 Download gff for
BO14219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18309552..18309571 | 17..36 | 100 | -> | Plus |
| arm_X | 18309645..18310821 | 37..1215 | 99 | | Plus |
BO14219.pep Sequence
Translation from 16 to 1231
> BO14219.pep
MNFISFSVISRFDFFWLDVLKQLDLKSRISFAASCDMFENIYVRSSPLRL
SRVVNLEEMIEFSLLETKLFVELSGSDIEIIRGGPHTPMFSHFEDFIRLM
SIRLTKVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQLNDENLVG
WEFLTHLETLDLRYNDRLTGSCLMSLPTSLLSLYITGCRNLCPNQLIFLN
RIPRLRELRASDLMPGGHWHIYRDLVLACPLLVMVEISICSLNRDEYRLG
ELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAPSGFVS
ANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNSPYITN
EVVIELVIGIPNLSVLIVQGCPLLTNRVYLDAELASKKRSNGNMVKVQLA
SFLDH
BO14219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 399 | CG15056-PA | 1..399 | 1..399 | 2045 | 100 | Plus |
| CG14891-PA | 495 | CG14891-PA | 118..481 | 13..378 | 435 | 33.2 | Plus |
