Clone Sequence Records
BO14220.5prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-29
> BO14220.5prime
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATGCAAGCTTTCTAGACC
BO14220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 615 | CG11333-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..661 | 16..628 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464080 | 360..628 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 31463541..31463751 | 151..361 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 31463349..31463484 | 16..151 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:41:28 has no hits.
BO14220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:19 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:34 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:01 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..622 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:15 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 43..666 | 7..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:15 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463343..31463484 | 7..151 | 97 | -> | Plus |
3R | 31463542..31463751 | 152..361 | 100 | -> | Plus |
3R | 31463814..31464085 | 362..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:01 Download gff for
BO14220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289065..27289206 | 7..151 | 97 | -> | Plus |
arm_3R | 27289264..27289473 | 152..361 | 100 | -> | Plus |
arm_3R | 27289536..27289807 | 362..634 | 99 | | Plus |
BO14220.3prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-29
> BO14220.3prime
ATGGTCTAGAAAGCTTGCATTTTTTGAGACGCGGCATAGCTGCATGTCTG
CGGAGATCTTCTTCACCAGAGGAGTAATCTCCTTGAAGGACTTGTTGTTC
TTGTCCCCCAGCAGATTAAATATCACACTCTCGGAAGTTGCTATGTTGCA
GCCAATGTGACGCAGGCGCTCCAAGGCCAAGTCCCGATCCTGATTGTGAC
GCGACGCACAGCAGTCGGCCACCAGCCAGACATCGATTTCATCATTTACC
AGGTCGAAGGCCGTCTGCTCCACACAGACGTGTGTCTCCAGACCGAAAAG
CACCACCGTCTTGGGCTTGCCACCGAAGATATCAGTCATACTCTTACGTA
CCGGCTCCACCAGCATAGAGAACATGGTCTTGGAAATATTGGCACAGGCA
TGCTTGATGTCCAACTCACAAACGGTCTTGCCCAGCCTCTCGGGATACTG
CTCGGTGACCAGCAGTGGCACTTGGAAGACCTTGCCGGCTGCCAGCAGTT
TAGTAGTGTTTTCGATGAGCGAACTTAGCAGCGGAATGGCCGGCTTGAAC
TTCTCCTGCACGTCGCACAGCATGAAGAGCGTTTTCGAGGGCACCAGGCG
GTACAAAGCTGGTCCTCTGACTTTGCTCATGTCGACTGATAACT
BO14220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 615 | CG11333-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..661 | 631..19 | 3065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464080 | 287..19 | 1345 | 100 | Minus |
3R | 32079331 | 3R | 31463541..31463751 | 496..286 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 31463349..31463484 | 631..496 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:20:18 has no hits.
BO14220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:18 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:33 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:34 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..622 | 13..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:54:39 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 43..666 | 13..640 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:54:39 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463343..31463484 | 496..640 | 97 | -> | Minus |
3R | 31463542..31463751 | 286..495 | 100 | -> | Minus |
3R | 31463814..31464085 | 13..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:34 Download gff for
BO14220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289065..27289206 | 496..640 | 97 | -> | Minus |
arm_3R | 27289264..27289473 | 286..495 | 100 | -> | Minus |
arm_3R | 27289536..27289807 | 13..285 | 99 | | Minus |
BO14220.complete Sequence
646 bp assembled on 2006-10-11
GenBank Submission: FJ633042
> BO14220.complete
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATGCAAGCTTTCTAGACCAT
BO14220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 615 | CG11333-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..661 | 16..628 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464080 | 360..628 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 31463541..31463751 | 151..361 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 31463349..31463484 | 16..151 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:02 has no hits.
BO14220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:24 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:21 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..620 | 13..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:54 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 6..617 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:24 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..620 | 13..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:55 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 50..661 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:55 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463350..31463484 | 17..151 | 100 | -> | Plus |
3R | 31463542..31463751 | 152..361 | 100 | -> | Plus |
3R | 31463814..31464080 | 362..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:54 Download gff for
BO14220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289072..27289206 | 17..151 | 100 | -> | Plus |
arm_3R | 27289264..27289473 | 152..361 | 100 | -> | Plus |
arm_3R | 27289536..27289802 | 362..630 | 99 | | Plus |
BO14220.pep Sequence
Translation from 16 to 646
> BO14220.pep
MSKVRGPALYRLVPSKTLFMLCDVQEKFKPAIPLLSSLIENTTKLLAAGK
VFQVPLLVTEQYPERLGKTVCELDIKHACANISKTMFSMLVEPVRKSMTD
IFGGKPKTVVLFGLETHVCVEQTAFDLVNDEIDVWLVADCCASRHNQDRD
LALERLRHIGCNIATSESVIFNLLGDKNNKSFKEITPLVKKISADMQLCR
VSKNASFLDH
BO14220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 204 | CG11333-PA | 1..204 | 1..204 | 1049 | 100 | Plus |
CG3663-PA | 208 | CG3663-PA | 8..196 | 12..200 | 583 | 58.7 | Plus |