Clone BO14220 Report

Search the DGRC for BO14220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG11333-RA
Protein status:BO14220.pep: validated full length
Sequenced Size:646

Clone Sequence Records

BO14220.5prime Sequence

644 bp (643 high quality bases) assembled on 2006-05-29

> BO14220.5prime
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATGCAAGCTTTCTAGACC

BO14220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 615 CG11333-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..661 16..628 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464080 360..628 1345 100 Plus
3R 32079331 3R 31463541..31463751 151..361 1055 100 Plus
3R 32079331 3R 31463349..31463484 16..151 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:41:28 has no hits.

BO14220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:19 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:34 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:01 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..622 13..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:15 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 43..666 7..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:15 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31463343..31463484 7..151 97 -> Plus
3R 31463542..31463751 152..361 100 -> Plus
3R 31463814..31464085 362..634 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:01 Download gff for BO14220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289065..27289206 7..151 97 -> Plus
arm_3R 27289264..27289473 152..361 100 -> Plus
arm_3R 27289536..27289807 362..634 99   Plus

BO14220.3prime Sequence

644 bp (643 high quality bases) assembled on 2006-05-29

> BO14220.3prime
ATGGTCTAGAAAGCTTGCATTTTTTGAGACGCGGCATAGCTGCATGTCTG
CGGAGATCTTCTTCACCAGAGGAGTAATCTCCTTGAAGGACTTGTTGTTC
TTGTCCCCCAGCAGATTAAATATCACACTCTCGGAAGTTGCTATGTTGCA
GCCAATGTGACGCAGGCGCTCCAAGGCCAAGTCCCGATCCTGATTGTGAC
GCGACGCACAGCAGTCGGCCACCAGCCAGACATCGATTTCATCATTTACC
AGGTCGAAGGCCGTCTGCTCCACACAGACGTGTGTCTCCAGACCGAAAAG
CACCACCGTCTTGGGCTTGCCACCGAAGATATCAGTCATACTCTTACGTA
CCGGCTCCACCAGCATAGAGAACATGGTCTTGGAAATATTGGCACAGGCA
TGCTTGATGTCCAACTCACAAACGGTCTTGCCCAGCCTCTCGGGATACTG
CTCGGTGACCAGCAGTGGCACTTGGAAGACCTTGCCGGCTGCCAGCAGTT
TAGTAGTGTTTTCGATGAGCGAACTTAGCAGCGGAATGGCCGGCTTGAAC
TTCTCCTGCACGTCGCACAGCATGAAGAGCGTTTTCGAGGGCACCAGGCG
GTACAAAGCTGGTCCTCTGACTTTGCTCATGTCGACTGATAACT

BO14220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 615 CG11333-RA 1..612 630..19 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..661 631..19 3065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464080 287..19 1345 100 Minus
3R 32079331 3R 31463541..31463751 496..286 1055 100 Minus
3R 32079331 3R 31463349..31463484 631..496 680 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:20:18 has no hits.

BO14220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:18 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 15..630 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:33 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 15..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:34 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..622 13..634 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:54:39 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 43..666 13..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:54:39 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31463343..31463484 496..640 97 -> Minus
3R 31463542..31463751 286..495 100 -> Minus
3R 31463814..31464085 13..285 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:34 Download gff for BO14220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289065..27289206 496..640 97 -> Minus
arm_3R 27289264..27289473 286..495 100 -> Minus
arm_3R 27289536..27289807 13..285 99   Minus

BO14220.complete Sequence

646 bp assembled on 2006-10-11

GenBank Submission: FJ633042

> BO14220.complete
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATGCAAGCTTTCTAGACCAT

BO14220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 615 CG11333-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..661 16..628 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464080 360..628 1345 100 Plus
3R 32079331 3R 31463541..31463751 151..361 1055 100 Plus
3R 32079331 3R 31463349..31463484 16..151 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:09:02 has no hits.

BO14220.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:24 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:21 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..620 13..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:54 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 6..617 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:24 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..620 13..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:55 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 50..661 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:55 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31463350..31463484 17..151 100 -> Plus
3R 31463542..31463751 152..361 100 -> Plus
3R 31463814..31464080 362..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:54 Download gff for BO14220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289072..27289206 17..151 100 -> Plus
arm_3R 27289264..27289473 152..361 100 -> Plus
arm_3R 27289536..27289802 362..630 99   Plus

BO14220.pep Sequence

Translation from 16 to 646

> BO14220.pep
MSKVRGPALYRLVPSKTLFMLCDVQEKFKPAIPLLSSLIENTTKLLAAGK
VFQVPLLVTEQYPERLGKTVCELDIKHACANISKTMFSMLVEPVRKSMTD
IFGGKPKTVVLFGLETHVCVEQTAFDLVNDEIDVWLVADCCASRHNQDRD
LALERLRHIGCNIATSESVIFNLLGDKNNKSFKEITPLVKKISADMQLCR
VSKNASFLDH

BO14220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 204 CG11333-PA 1..204 1..204 1049 100 Plus
CG3663-PA 208 CG3663-PA 8..196 12..200 583 58.7 Plus