Clone Sequence Records
BO14221.3prime Sequence
857 bp (851 high quality bases) assembled on 2006-05-29
> BO14221.3prime
ATGGTCTAGAAAGCTTGCGCCTTGCTTTAATTTCTGTTGATTTAGGAGCT
TAAACTCCGGACCCCAAACGACGTTGTTGGCGAACTCCCCGAGCAGATAG
CAAACCAGGTTGAACCCCACAAGTAGTGCCAAGAACACGTAGCGCAGGTA
TGCGGGCAGCACTTCCAGAATGGGATACACCCACTCGCCACTGAAGTAGC
GAACAATGTGCAGCCAGATGATGTAAAGCAGGATGAAGGAGACGTTGCCC
GTGATGCCTGCCAATCGACTCGGATAGCGGCGGAAGCAGGTAAACAGGTC
CATAATGGCCAAAAGGGCCACATTCGTGTGTACCACGTGATTCAACCAGC
TGGGGAAAATCGCATCCAGCGCTGAGGGAAAGATGAGCTCACGGTCCCAC
ACGTAGATGACCCAAAACGAGAGGCAGACATTGTGGGCGACAGGAAAGGC
AAAGGCGGCGAACACATAGTCCCTCACCGATCGCAACATGGATTTTGAAT
CCCCGGAGACATTGTTATCGCCGAAGAGATCGTTCAGCAGAGCCAATGAG
TGGTAGATGGCCTGTAGAATGACGTCCAAGAAGGTAAGGTACTTGAACTT
GCCGCCCCACCGCGCCTTCAGTTCATCCTCGTCTAGCAAATCCGTGGGCC
AATGCACCCGGAAGTAGTGAAAGTATATCCCATACGAAAACTGCGCTGCC
GCCAGGAGATGGACCAGGAATCTCAGGTATTTGAAGGCACCGCTCGTATA
GGCATCGTTGCAAGTGTTCAACTGGGCTTTAGTGGCCTCGACAGCTTCCT
TGGCGGCGTTGAACTCGCGCACCTGCTTCTTGCTCTTGCCCATGTCGACT
GATAACT
BO14221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PA | 828 | CG11601-RA | 1..825 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 49..873 | 843..19 | 4125 | 100 | Minus |
CG11601-RB | 1077 | CG11601-RB | 49..873 | 843..19 | 4125 | 100 | Minus |
CG11601-RA | 1151 | CG11601-RA | 123..947 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283147 | 350..843 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 282175..282508 | 19..352 | 1670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:40:36 has no hits.
BO14221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:20 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:36 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:54:47 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..947 | 19..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:01 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..947 | 19..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:01 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282175..282505 | 19..349 | 100 | <- | Plus |
2L | 282654..283152 | 350..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:54:47 Download gff for
BO14221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282175..282505 | 19..349 | 100 | <- | Plus |
arm_2L | 282654..283152 | 350..850 | 99 | | Plus |
BO14221.5prime Sequence
792 bp (790 high quality bases) assembled on 2006-05-29
> BO14221.5prime
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGTTCAA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAACAACGTCGT
BO14221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PA | 828 | CG11601-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 49..824 | 17..792 | 3880 | 100 | Plus |
CG11601-RB | 1077 | CG11601-RB | 49..824 | 17..792 | 3880 | 100 | Plus |
CG11601-RA | 1151 | CG11601-RA | 123..898 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283147 | 510..17 | 2470 | 100 | Minus |
2L | 23513712 | 2L | 282224..282508 | 792..508 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:53:56 has no hits.
BO14221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:21 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:37 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:12:46 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..898 | 10..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:36:44 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..898 | 10..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:36:44 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282224..282505 | 511..792 | 100 | <- | Minus |
2L | 282654..283152 | 10..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:12:46 Download gff for
BO14221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282224..282505 | 511..792 | 100 | <- | Minus |
arm_2L | 282654..283152 | 10..510 | 99 | | Minus |
BO14221.complete Sequence
859 bp assembled on 2006-10-11
GenBank Submission: FJ633043
> BO14221.complete
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGTTCAA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAACAACGTCGTTTGGGGTC
CGGAGTTTAAGCTCCTAAATCAACAGAAATTAAAGCAAGGCGCAAGCTTT
CTAGACCAT
BO14221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 828 | CG11601-PC | 1..825 | 17..841 | 4125 | 100 | Plus |
CG11601-RB | 828 | CG11601-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
CG11601-RA | 828 | CG11601-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 49..873 | 17..841 | 4125 | 100 | Plus |
CG11601-RB | 1077 | CG11601-RB | 49..873 | 17..841 | 4125 | 100 | Plus |
CG11601-RA | 1151 | CG11601-RA | 123..947 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283147 | 510..17 | 2470 | 100 | Minus |
2L | 23513712 | 2L | 282175..282508 | 841..508 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:44:50 has no hits.
BO14221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:01 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:12 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 130..959 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:48 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 123..947 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:01 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 130..959 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:33 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 123..947 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:33 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282173..282505 | 511..843 | 99 | <- | Minus |
2L | 282654..283147 | 17..510 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:48 Download gff for
BO14221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282173..282505 | 511..843 | 99 | <- | Minus |
arm_2L | 282654..283147 | 17..510 | 100 | | Minus |
BO14221.pep Sequence
Translation from 16 to 859
> BO14221.pep
MGKSKKQVREFNAAKEAVEATKAQLNTCNDAYTSGAFKYLRFLVHLLAAA
QFSYGIYFHYFRVHWPTDLLDEDELKARWGGKFKYLTFLDVILQAIYHSL
ALLNDLFGDNNVSGDSKSMLRSVRDYVFAAFAFPVAHNVCLSFWVIYVWD
RELIFPSALDAIFPSWLNHVVHTNVALLAIMDLFTCFRRYPSRLAGITGN
VSFILLYIIWLHIVRYFSGEWVYPILEVLPAYLRYVFLALLVGFNLVCYL
LGEFANNVVWGPEFKLLNQQKLKQGASFLDH
BO14221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PC | 275 | CG11601-PC | 1..275 | 1..275 | 1459 | 100 | Plus |
CG11601-PB | 275 | CG11601-PB | 1..275 | 1..275 | 1459 | 100 | Plus |
CG11601-PA | 275 | CG11601-PA | 1..275 | 1..275 | 1459 | 100 | Plus |
CG3625-PB | 248 | CG3625-PB | 7..246 | 29..270 | 638 | 48.4 | Plus |
CG3625-PA | 245 | CG3625-PA | 8..243 | 26..270 | 572 | 42.9 | Plus |