Clone BO14223 Report

Search the DGRC for BO14223

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdecay-RA
Protein status:BO14223.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO14223.3prime Sequence

764 bp (717 high quality bases) assembled on 2006-05-29

> BO14223.3prime
ATGGTCTAGAAAGCTTGCGGTCTTGGGCTTAACACGCAGCTGGAATGTTT
TGGTCAGTGTCGACATAAAGTTGGGCATTTCCTTCATCTGGTTGAGGGCC
TCGTTCTTCGTATTCGACTGGTACTCGTAGGCCACCTTCCGATTCACTGC
GGTCAGCAGGCGGAGTAGCTCGACGCCCTCCGGCGTGGCAGCTTCGTTGG
CGGCGGCCTGGTCGAGGACGCGGCACAAGCTCTGGATGAACCAGGAGCCA
TCGTCAACGTTACGGAATGAGAAGAATTTGTCGAATGTGGAGTAGAAGAC
GAGGATGTCCGCCGTGCTGGGAATGGCATAGGTGATGGGCTGAACGGCGG
CAGCGGGCTCCGGGACCAGTTCCCTGGTCATCACAGCGAAGCTGGAGAAC
TCGACTGCCTTTTCCAGGTTGGCTCCGCGACAGGCCTGGATGAAGAAGAG
TTTGGGTTTGTTCTTGAGCGTCTTGCAGTTGTCGCCGAGGAAGGGATTCC
AAAGGCGCTCCACAGGATATGACATGTCCTTAGCGTAGACCTTGCCTTCG
GTGCCGTGTGACATCACCGCCAACACAAAGCAGTCGTTTTGACTGTGATC
CTCGCGAGCAACCTCTTTGAGCGTGTCGTTGATCTCGGAGAAGGTCAGAT
CGTCGAAGGTGCGTACATCGAATCCGAATCCCTGCAGCGTCGCCTCCATG
TCATCGCGATCCCGTTCGGTGCCCACGCGCTGCTTCTGTCCCTTGACATC
CTTGTGGTTCAGGA

BO14223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14902-PA 927 decay-RA 179..924 764..19 3680 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 226..971 764..19 3700 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16499763..16500096 279..612 1655 99.7 Plus
3R 32079331 3R 16499198..16499457 19..278 1285 99.6 Plus
3R 32079331 3R 16500673..16500825 612..764 765 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:19:03 has no hits.

BO14223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:25 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
decay-PA 180..927 16..763 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:42 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14902-PA 180..927 16..763 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:18 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
decay-RA 227..977 12..763 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:54:27 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 227..977 12..763 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:54:27 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16499192..16499457 12..278 98 <- Plus
3R 16499763..16500095 279..611 99 <- Plus
3R 16500673..16500824 612..763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:18 Download gff for BO14223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12325485..12325817 279..611 99 <- Plus
arm_3R 12326395..12326546 612..763 100   Plus
arm_3R 12324914..12325179 12..278 98 <- Plus

BO14223.5prime Sequence

894 bp (776 high quality bases) assembled on 2006-05-29

> BO14223.5prime
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAAGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTAT

BO14223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14902-PA 927 decay-RA 1..878 17..894 4315 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 48..925 17..894 4345 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16499763..16500096 680..347 1655 99.7 Minus
3R 32079331 3R 16500673..16501003 347..17 1655 100 Minus
3R 32079331 3R 16499244..16499457 894..681 1040 99.1 Minus
Blast to na_te.dros performed on 2015-02-04 02:18:57 has no hits.

BO14223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:26 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
decay-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:43 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14902-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:31 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
decay-RA 41..925 11..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:33 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 41..925 11..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:33 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16499244..16499457 681..894 99 <- Minus
3R 16499763..16500095 348..680 99 <- Minus
3R 16500673..16501010 11..347 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:31 Download gff for BO14223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12324966..12325179 681..894 99 <- Minus
arm_3R 12325485..12325817 348..680 99 <- Minus
arm_3R 12326395..12326732 11..347 99   Minus

BO14223.complete Sequence

958 bp assembled on 2006-10-11

GenBank Submission: FJ633044

> BO14223.complete
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTATGTCGAC
ACTGACCAAAACATTCCAGCTGCGTGTTAAGCCCAAGACCGCAAGCTTTC
TAGACCAT

BO14223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 927 CG14902-PA 1..924 17..940 4590 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 48..971 17..940 4590 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16499763..16500096 680..347 1655 99.7 Minus
3R 32079331 3R 16500673..16501003 347..17 1655 100 Minus
3R 32079331 3R 16499198..16499457 940..681 1285 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 01:14:58 has no hits.

BO14223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:20 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:26 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 663..1599 11..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:47 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 48..971 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:20 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 663..1599 11..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:49 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 48..971 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:49 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16499195..16499457 681..942 98 <- Minus
3R 16499763..16500095 348..680 99 <- Minus
3R 16500673..16501003 17..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:47 Download gff for BO14223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12324917..12325179 681..942 98 <- Minus
arm_3R 12325485..12325817 348..680 99 <- Minus
arm_3R 12326395..12326725 17..347 100   Minus

BO14223.pep Sequence

Translation from 16 to 958

> BO14223.pep
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKTASFLDH

BO14223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-PA 308 CG14902-PA 1..308 1..308 1599 100 Plus
Dcp-1-PA 323 CG5370-PA 47..317 22..306 410 34 Plus
Drice-PA 339 CG7788-PA 94..331 56..305 405 35.6 Plus
Dronc-PA 450 CG8091-PA 196..397 56..243 186 27.3 Plus
Strica-PB 527 CG7863-PB 317..484 60..246 185 31.1 Plus