Clone Sequence Records
BO14223.3prime Sequence
764 bp (717 high quality bases) assembled on 2006-05-29
> BO14223.3prime
ATGGTCTAGAAAGCTTGCGGTCTTGGGCTTAACACGCAGCTGGAATGTTT
TGGTCAGTGTCGACATAAAGTTGGGCATTTCCTTCATCTGGTTGAGGGCC
TCGTTCTTCGTATTCGACTGGTACTCGTAGGCCACCTTCCGATTCACTGC
GGTCAGCAGGCGGAGTAGCTCGACGCCCTCCGGCGTGGCAGCTTCGTTGG
CGGCGGCCTGGTCGAGGACGCGGCACAAGCTCTGGATGAACCAGGAGCCA
TCGTCAACGTTACGGAATGAGAAGAATTTGTCGAATGTGGAGTAGAAGAC
GAGGATGTCCGCCGTGCTGGGAATGGCATAGGTGATGGGCTGAACGGCGG
CAGCGGGCTCCGGGACCAGTTCCCTGGTCATCACAGCGAAGCTGGAGAAC
TCGACTGCCTTTTCCAGGTTGGCTCCGCGACAGGCCTGGATGAAGAAGAG
TTTGGGTTTGTTCTTGAGCGTCTTGCAGTTGTCGCCGAGGAAGGGATTCC
AAAGGCGCTCCACAGGATATGACATGTCCTTAGCGTAGACCTTGCCTTCG
GTGCCGTGTGACATCACCGCCAACACAAAGCAGTCGTTTTGACTGTGATC
CTCGCGAGCAACCTCTTTGAGCGTGTCGTTGATCTCGGAGAAGGTCAGAT
CGTCGAAGGTGCGTACATCGAATCCGAATCCCTGCAGCGTCGCCTCCATG
TCATCGCGATCCCGTTCGGTGCCCACGCGCTGCTTCTGTCCCTTGACATC
CTTGTGGTTCAGGA
BO14223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14902-PA | 927 | decay-RA | 179..924 | 764..19 | 3680 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 226..971 | 764..19 | 3700 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16499763..16500096 | 279..612 | 1655 | 99.7 | Plus |
3R | 32079331 | 3R | 16499198..16499457 | 19..278 | 1285 | 99.6 | Plus |
3R | 32079331 | 3R | 16500673..16500825 | 612..764 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:19:03 has no hits.
BO14223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:25 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-PA | 180..927 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:42 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14902-PA | 180..927 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:18 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 227..977 | 12..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:54:27 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 227..977 | 12..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:54:27 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499192..16499457 | 12..278 | 98 | <- | Plus |
3R | 16499763..16500095 | 279..611 | 99 | <- | Plus |
3R | 16500673..16500824 | 612..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:18 Download gff for
BO14223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12325485..12325817 | 279..611 | 99 | <- | Plus |
arm_3R | 12326395..12326546 | 612..763 | 100 | | Plus |
arm_3R | 12324914..12325179 | 12..278 | 98 | <- | Plus |
BO14223.5prime Sequence
894 bp (776 high quality bases) assembled on 2006-05-29
> BO14223.5prime
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAAGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTAT
BO14223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14902-PA | 927 | decay-RA | 1..878 | 17..894 | 4315 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 48..925 | 17..894 | 4345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16499763..16500096 | 680..347 | 1655 | 99.7 | Minus |
3R | 32079331 | 3R | 16500673..16501003 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 16499244..16499457 | 894..681 | 1040 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:18:57 has no hits.
BO14223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:26 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:43 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14902-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:31 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 41..925 | 11..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:33 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 41..925 | 11..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:33 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499244..16499457 | 681..894 | 99 | <- | Minus |
3R | 16499763..16500095 | 348..680 | 99 | <- | Minus |
3R | 16500673..16501010 | 11..347 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:31 Download gff for
BO14223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12324966..12325179 | 681..894 | 99 | <- | Minus |
arm_3R | 12325485..12325817 | 348..680 | 99 | <- | Minus |
arm_3R | 12326395..12326732 | 11..347 | 99 | | Minus |
BO14223.complete Sequence
958 bp assembled on 2006-10-11
GenBank Submission: FJ633044
> BO14223.complete
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTATGTCGAC
ACTGACCAAAACATTCCAGCTGCGTGTTAAGCCCAAGACCGCAAGCTTTC
TAGACCAT
BO14223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 927 | CG14902-PA | 1..924 | 17..940 | 4590 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 48..971 | 17..940 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16499763..16500096 | 680..347 | 1655 | 99.7 | Minus |
3R | 32079331 | 3R | 16500673..16501003 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 16499198..16499457 | 940..681 | 1285 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:58 has no hits.
BO14223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:20 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:26 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 663..1599 | 11..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:47 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 48..971 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:20 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 663..1599 | 11..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:49 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 48..971 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:49 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499195..16499457 | 681..942 | 98 | <- | Minus |
3R | 16499763..16500095 | 348..680 | 99 | <- | Minus |
3R | 16500673..16501003 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:47 Download gff for
BO14223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12324917..12325179 | 681..942 | 98 | <- | Minus |
arm_3R | 12325485..12325817 | 348..680 | 99 | <- | Minus |
arm_3R | 12326395..12326725 | 17..347 | 100 | | Minus |
BO14223.pep Sequence
Translation from 16 to 958
> BO14223.pep
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKTASFLDH
BO14223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-PA | 308 | CG14902-PA | 1..308 | 1..308 | 1599 | 100 | Plus |
Dcp-1-PA | 323 | CG5370-PA | 47..317 | 22..306 | 410 | 34 | Plus |
Drice-PA | 339 | CG7788-PA | 94..331 | 56..305 | 405 | 35.6 | Plus |
Dronc-PA | 450 | CG8091-PA | 196..397 | 56..243 | 186 | 27.3 | Plus |
Strica-PB | 527 | CG7863-PB | 317..484 | 60..246 | 185 | 31.1 | Plus |