Clone Sequence Records
BO14226.3prime Sequence
365 bp (364 high quality bases) assembled on 2006-05-29
> BO14226.3prime
ATGGTCTAGAAAGCTTGCAGACATTTGTAATAGTTCACACTTTGAAAGCT
CATAGTATATGAGACCCGCGCCGATGCCAAACACAAAAGCCTCACTCAGC
ATATCAGCGCCCAATCTGGTGGCGACCGGAGTGGAGAGGGGTGGAATCCG
CCTGGGCTGCTTTAATCGAAGCATACGAAGCTTGGAACGGACCTCAAAGG
TGTTGTAGAGCTGGGCAGGCGGAATAATGATGTAGCGCCGTATAAAGGGA
TGATGCTTGCCCATCCAAATCAGAAGGTCTCCGAATGGCTTGCTAATCCG
TTTCACGCCATGAATGAAAATTTTTCCAACTGGAAAACTACCAATCACCA
TGTCGACTGATAACT
BO14226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13602-PA | 336 | CG13602-RA | 1..333 | 351..19 | 1640 | 99.6 | Minus |
CG13602-PB | 807 | CG13602-RB | 494..804 | 329..19 | 1530 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..913 | 351..19 | 1650 | 99.7 | Minus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 351..41 | 1540 | 99.7 | Minus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 351..41 | 1540 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927974..23928306 | 19..351 | 1650 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:32 has no hits.
BO14226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:30 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:49 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:35 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..916 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:41 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..916 | 15..351 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:41 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927971..23928306 | 15..351 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:35 Download gff for
BO14226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753693..19754028 | 15..351 | 99 | | Plus |
BO14226.5prime Sequence
365 bp (364 high quality bases) assembled on 2006-05-29
> BO14226.5prime
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTG
CAAGCTTTCTAGACC
BO14226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13602-PA | 336 | CG13602-RA | 1..333 | 17..349 | 1640 | 99.6 | Plus |
CG13602-PB | 807 | CG13602-RB | 494..804 | 39..349 | 1530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..913 | 17..349 | 1650 | 99.7 | Plus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 17..327 | 1540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927974..23928306 | 349..17 | 1650 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:53:14 has no hits.
BO14226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:32 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:50 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:12:41 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..916 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:39 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..916 | 17..353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:39 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927971..23928306 | 17..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:12:41 Download gff for
BO14226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753693..19754028 | 17..353 | 99 | | Minus |
BO14226.complete Sequence
367 bp assembled on 2006-10-11
GenBank Submission: FJ633045
> BO14226.complete
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTG
CAAGCTTTCTAGACCAT
BO14226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43998-RD | 462 | CG43998-PD | 1..311 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RC | 462 | CG43998-PC | 1..311 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RB | 462 | CG43998-PB | 1..311 | 17..327 | 1540 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..913 | 17..349 | 1650 | 99.7 | Plus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 17..327 | 1540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927974..23928306 | 349..17 | 1650 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:55 has no hits.
BO14226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:40 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:42 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 581..916 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:20 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..913 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:40 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 581..916 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:17 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..913 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:17 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927972..23928306 | 17..351 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:20 Download gff for
BO14226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753694..19754028 | 17..351 | 99 | | Minus |
BO14226.pep Sequence
Translation from 16 to 367
> BO14226.pep
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMSASFLDH
BO14226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43998-PD | 153 | CG43998-PD | 1..104 | 1..104 | 540 | 100 | Plus |
CG43998-PC | 153 | CG43998-PC | 1..104 | 1..104 | 540 | 100 | Plus |
CG43998-PB | 153 | CG43998-PB | 1..104 | 1..104 | 540 | 100 | Plus |
CG13601-PA | 255 | CG13601-PA | 1..104 | 1..104 | 233 | 43.3 | Plus |
CG13601-PB | 277 | CG13601-PB | 1..104 | 1..104 | 233 | 43.3 | Plus |