Clone BO14226 Report

Search the DGRC for BO14226

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG13602-RA
Protein status:BO14226.pep: validated full length
Sequenced Size:367

Clone Sequence Records

BO14226.3prime Sequence

365 bp (364 high quality bases) assembled on 2006-05-29

> BO14226.3prime
ATGGTCTAGAAAGCTTGCAGACATTTGTAATAGTTCACACTTTGAAAGCT
CATAGTATATGAGACCCGCGCCGATGCCAAACACAAAAGCCTCACTCAGC
ATATCAGCGCCCAATCTGGTGGCGACCGGAGTGGAGAGGGGTGGAATCCG
CCTGGGCTGCTTTAATCGAAGCATACGAAGCTTGGAACGGACCTCAAAGG
TGTTGTAGAGCTGGGCAGGCGGAATAATGATGTAGCGCCGTATAAAGGGA
TGATGCTTGCCCATCCAAATCAGAAGGTCTCCGAATGGCTTGCTAATCCG
TTTCACGCCATGAATGAAAATTTTTCCAACTGGAAAACTACCAATCACCA
TGTCGACTGATAACT

BO14226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13602-PA 336 CG13602-RA 1..333 351..19 1640 99.6 Minus
CG13602-PB 807 CG13602-RB 494..804 329..19 1530 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..913 351..19 1650 99.7 Minus
CG43999-RC 1098 CR43999-RC 581..891 351..41 1540 99.7 Minus
CG43998-RD 597 CG43998-RD 80..390 351..41 1540 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927974..23928306 19..351 1650 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 09:55:32 has no hits.

BO14226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:30 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 15..351 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:49 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 15..351 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:35 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..916 15..351 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:41 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..916 15..351 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:41 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927971..23928306 15..351 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:35 Download gff for BO14226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753693..19754028 15..351 99   Plus

BO14226.5prime Sequence

365 bp (364 high quality bases) assembled on 2006-05-29

> BO14226.5prime
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTG
CAAGCTTTCTAGACC

BO14226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13602-PA 336 CG13602-RA 1..333 17..349 1640 99.6 Plus
CG13602-PB 807 CG13602-RB 494..804 39..349 1530 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..913 17..349 1650 99.7 Plus
CG43999-RC 1098 CR43999-RC 581..891 17..327 1540 99.7 Plus
CG43998-RD 597 CG43998-RD 80..390 17..327 1540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927974..23928306 349..17 1650 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 12:53:14 has no hits.

BO14226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:32 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 17..353 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:50 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:12:41 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..916 17..353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:39 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..916 17..353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:39 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927971..23928306 17..353 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:12:41 Download gff for BO14226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753693..19754028 17..353 99   Minus

BO14226.complete Sequence

367 bp assembled on 2006-10-11

GenBank Submission: FJ633045

> BO14226.complete
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTG
CAAGCTTTCTAGACCAT

BO14226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-RD 462 CG43998-PD 1..311 17..327 1540 99.7 Plus
CG43998-RC 462 CG43998-PC 1..311 17..327 1540 99.7 Plus
CG43998-RB 462 CG43998-PB 1..311 17..327 1540 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..913 17..349 1650 99.7 Plus
CG43999-RC 1098 CR43999-RC 581..891 17..327 1540 99.7 Plus
CG43998-RD 597 CG43998-RD 80..390 17..327 1540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927974..23928306 349..17 1650 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 21:04:55 has no hits.

BO14226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:40 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..336 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:42 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 581..916 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:20 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..913 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:40 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 581..916 17..353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:17 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..913 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:17 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927972..23928306 17..351 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:20 Download gff for BO14226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753694..19754028 17..351 99   Minus

BO14226.pep Sequence

Translation from 16 to 367

> BO14226.pep
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMSASFLDH

BO14226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-PD 153 CG43998-PD 1..104 1..104 540 100 Plus
CG43998-PC 153 CG43998-PC 1..104 1..104 540 100 Plus
CG43998-PB 153 CG43998-PB 1..104 1..104 540 100 Plus
CG13601-PA 255 CG13601-PA 1..104 1..104 233 43.3 Plus
CG13601-PB 277 CG13601-PB 1..104 1..104 233 43.3 Plus