Clone Sequence Records
BO14227.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-29
> BO14227.3prime
ATGGTCTAGAAAGCTTGCCAGGCTTTTGGTTATGTTCTGGAAGAGGCGAC
GTCCCCACCACGACTCCAGGTCGAAGGGCTTGAAGTCCTGTAGCGCTGGA
CTCGGTGGTTCCACCCAGACAGTGGCTGTTGAGGCAGCGGGCACTGGGCT
GTTGGCCATTATGCTTTCCACTGGACTGGCGGCGCTGTTGTTGTTGGCAT
CCGCTACAGGTTTCTCAACAGGCTTGGCGGATGAGCTCGAGTCGTAGGGA
TTCTGCGCCACCAGCATGTTCCAGGAGTCATTTATGTAACGTATTATTTC
CTCATGTTGCGGCGTTATCACCTCATCCTCGATCAGTTTGGTTGGCGTTA
TCCGCTTGGTGGCGAAGCTCTGTTGAAACACCGGACGCGGTATGTTTTTG
TGCTCCTCGGGACTGTTCAGATCGAAACTAGCGTTCTTGCGGCCGCTCTC
CTTGATGCTTTCGAATTTTTCAAAATTTGGTGCCAGGCCGCGACGCGTTT
TAGCAACAATTTTGCTAGGTCCCTTGTTGATTGTGTACATGTCGACTGAT
AACT
BO14227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PA | 525 | CG7841-RA | 1..522 | 540..19 | 2560 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..924 | 541..19 | 2585 | 99.6 | Minus |
CG7841-RA | 1377 | CG7841-RA | 402..924 | 541..19 | 2585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505892..15506148 | 19..275 | 1255 | 99.2 | Plus |
3L | 28110227 | 3L | 15506227..15506345 | 276..394 | 595 | 100 | Plus |
3L | 28110227 | 3L | 15507473..15507567 | 395..489 | 475 | 100 | Plus |
3L | 28110227 | 3L | 15507798..15507851 | 488..541 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 200..141 | 117 | 68.3 | Minus |
BO14227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:33 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:51 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:51 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..924 | 19..548 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:32 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..924 | 19..548 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:32 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15505892..15506148 | 19..275 | 99 | <- | Plus |
3L | 15506227..15506345 | 276..394 | 100 | <- | Plus |
3L | 15507473..15507566 | 395..488 | 100 | <- | Plus |
3L | 15507799..15507854 | 489..548 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:51 Download gff for
BO14227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15498992..15499248 | 19..275 | 99 | <- | Plus |
arm_3L | 15499327..15499445 | 276..394 | 100 | <- | Plus |
arm_3L | 15500573..15500666 | 395..488 | 100 | <- | Plus |
arm_3L | 15500899..15500954 | 489..548 | 93 | | Plus |
BO14227.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-29
> BO14227.5prime
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGGCAAGCTTTCTA
GACC
BO14227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PA | 525 | CG7841-RA | 1..522 | 17..538 | 2560 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..924 | 16..538 | 2585 | 99.6 | Plus |
CG7841-RA | 1377 | CG7841-RA | 402..924 | 16..538 | 2585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505892..15506148 | 538..282 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 15506227..15506345 | 281..163 | 595 | 100 | Minus |
3L | 28110227 | 3L | 15507473..15507567 | 162..68 | 475 | 100 | Minus |
3L | 28110227 | 3L | 15507798..15507851 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 02:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 357..416 | 117 | 68.3 | Plus |
BO14227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:33 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:53 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:01 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..924 | 9..538 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:03 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..924 | 9..538 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:03 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15505892..15506148 | 282..538 | 99 | <- | Minus |
3L | 15506227..15506345 | 163..281 | 100 | <- | Minus |
3L | 15507473..15507566 | 69..162 | 100 | <- | Minus |
3L | 15507799..15507851 | 16..68 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:01 Download gff for
BO14227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15498992..15499248 | 282..538 | 99 | <- | Minus |
arm_3L | 15499327..15499445 | 163..281 | 100 | <- | Minus |
arm_3L | 15500573..15500666 | 69..162 | 100 | <- | Minus |
arm_3L | 15500899..15500951 | 16..68 | 100 | <- | Minus |
BO14227.complete Sequence
556 bp assembled on 2006-10-11
GenBank Submission: FJ633046
> BO14227.complete
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGGCAAGCTTTCTA
GACCAT
BO14227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 525 | CG7841-PB | 1..522 | 17..538 | 2580 | 99.6 | Plus |
CG7841-RA | 525 | CG7841-PA | 1..522 | 17..538 | 2580 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..924 | 16..538 | 2585 | 99.6 | Plus |
CG7841-RA | 1377 | CG7841-RA | 402..924 | 16..538 | 2585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505892..15506148 | 538..282 | 1255 | 99.2 | Minus |
3L | 28110227 | 3L | 15506227..15506345 | 281..163 | 595 | 100 | Minus |
3L | 28110227 | 3L | 15507473..15507567 | 162..68 | 475 | 100 | Minus |
3L | 28110227 | 3L | 15507798..15507851 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 357..416 | 117 | 68.3 | Plus |
BO14227.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:22 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:28 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 432..960 | 9..538 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:49 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 403..924 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:22 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 432..960 | 9..538 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:07 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 403..924 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:07 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15505890..15506148 | 282..540 | 98 | <- | Minus |
3L | 15506227..15506345 | 163..281 | 100 | <- | Minus |
3L | 15507473..15507566 | 69..162 | 100 | <- | Minus |
3L | 15507799..15507850 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:49 Download gff for
BO14227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15500573..15500666 | 69..162 | 100 | <- | Minus |
arm_3L | 15500899..15500950 | 17..68 | 100 | | Minus |
arm_3L | 15498990..15499248 | 282..540 | 98 | <- | Minus |
arm_3L | 15499327..15499445 | 163..281 | 100 | <- | Minus |
BO14227.pep Sequence
Translation from 16 to 556
> BO14227.pep
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSLASFLDH
BO14227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PB | 174 | CG7841-PB | 1..174 | 1..174 | 908 | 100 | Plus |
CG7841-PA | 174 | CG7841-PA | 1..174 | 1..174 | 908 | 100 | Plus |