Clone BO14227 Report

Search the DGRC for BO14227

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7841-RA
Protein status:BO14227.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO14227.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-29

> BO14227.3prime
ATGGTCTAGAAAGCTTGCCAGGCTTTTGGTTATGTTCTGGAAGAGGCGAC
GTCCCCACCACGACTCCAGGTCGAAGGGCTTGAAGTCCTGTAGCGCTGGA
CTCGGTGGTTCCACCCAGACAGTGGCTGTTGAGGCAGCGGGCACTGGGCT
GTTGGCCATTATGCTTTCCACTGGACTGGCGGCGCTGTTGTTGTTGGCAT
CCGCTACAGGTTTCTCAACAGGCTTGGCGGATGAGCTCGAGTCGTAGGGA
TTCTGCGCCACCAGCATGTTCCAGGAGTCATTTATGTAACGTATTATTTC
CTCATGTTGCGGCGTTATCACCTCATCCTCGATCAGTTTGGTTGGCGTTA
TCCGCTTGGTGGCGAAGCTCTGTTGAAACACCGGACGCGGTATGTTTTTG
TGCTCCTCGGGACTGTTCAGATCGAAACTAGCGTTCTTGCGGCCGCTCTC
CTTGATGCTTTCGAATTTTTCAAAATTTGGTGCCAGGCCGCGACGCGTTT
TAGCAACAATTTTGCTAGGTCCCTTGTTGATTGTGTACATGTCGACTGAT
AACT

BO14227.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PA 525 CG7841-RA 1..522 540..19 2560 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..924 541..19 2585 99.6 Minus
CG7841-RA 1377 CG7841-RA 402..924 541..19 2585 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505892..15506148 19..275 1255 99.2 Plus
3L 28110227 3L 15506227..15506345 276..394 595 100 Plus
3L 28110227 3L 15507473..15507567 395..489 475 100 Plus
3L 28110227 3L 15507798..15507851 488..541 270 100 Plus
Blast to na_te.dros performed 2015-02-03 06:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 200..141 117 68.3 Minus

BO14227.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:33 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 18..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:51 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 18..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:51 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..924 19..548 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:32 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..924 19..548 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:32 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15505892..15506148 19..275 99 <- Plus
3L 15506227..15506345 276..394 100 <- Plus
3L 15507473..15507566 395..488 100 <- Plus
3L 15507799..15507854 489..548 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:51 Download gff for BO14227.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498992..15499248 19..275 99 <- Plus
arm_3L 15499327..15499445 276..394 100 <- Plus
arm_3L 15500573..15500666 395..488 100 <- Plus
arm_3L 15500899..15500954 489..548 93   Plus

BO14227.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-29

> BO14227.5prime
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGGCAAGCTTTCTA
GACC

BO14227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PA 525 CG7841-RA 1..522 17..538 2560 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..924 16..538 2585 99.6 Plus
CG7841-RA 1377 CG7841-RA 402..924 16..538 2585 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505892..15506148 538..282 1255 99.2 Minus
3L 28110227 3L 15506227..15506345 281..163 595 100 Minus
3L 28110227 3L 15507473..15507567 162..68 475 100 Minus
3L 28110227 3L 15507798..15507851 69..16 270 100 Minus
Blast to na_te.dros performed 2015-02-04 02:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 357..416 117 68.3 Plus

BO14227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:33 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 17..539 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:53 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:01 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..924 9..538 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:03 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..924 9..538 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:03 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15505892..15506148 282..538 99 <- Minus
3L 15506227..15506345 163..281 100 <- Minus
3L 15507473..15507566 69..162 100 <- Minus
3L 15507799..15507851 16..68 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:01 Download gff for BO14227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498992..15499248 282..538 99 <- Minus
arm_3L 15499327..15499445 163..281 100 <- Minus
arm_3L 15500573..15500666 69..162 100 <- Minus
arm_3L 15500899..15500951 16..68 100 <- Minus

BO14227.complete Sequence

556 bp assembled on 2006-10-11

GenBank Submission: FJ633046

> BO14227.complete
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGGCAAGCTTTCTA
GACCAT

BO14227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 525 CG7841-PB 1..522 17..538 2580 99.6 Plus
CG7841-RA 525 CG7841-PA 1..522 17..538 2580 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..924 16..538 2585 99.6 Plus
CG7841-RA 1377 CG7841-RA 402..924 16..538 2585 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505892..15506148 538..282 1255 99.2 Minus
3L 28110227 3L 15506227..15506345 281..163 595 100 Minus
3L 28110227 3L 15507473..15507567 162..68 475 100 Minus
3L 28110227 3L 15507798..15507851 69..16 270 100 Minus
Blast to na_te.dros performed 2014-11-27 10:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 357..416 117 68.3 Plus

BO14227.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:22 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:28 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 432..960 9..538 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:49 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 403..924 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:22 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 432..960 9..538 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:07 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 403..924 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:07 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505890..15506148 282..540 98 <- Minus
3L 15506227..15506345 163..281 100 <- Minus
3L 15507473..15507566 69..162 100 <- Minus
3L 15507799..15507850 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:49 Download gff for BO14227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15500573..15500666 69..162 100 <- Minus
arm_3L 15500899..15500950 17..68 100   Minus
arm_3L 15498990..15499248 282..540 98 <- Minus
arm_3L 15499327..15499445 163..281 100 <- Minus

BO14227.pep Sequence

Translation from 16 to 556

> BO14227.pep
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSLASFLDH

BO14227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PB 174 CG7841-PB 1..174 1..174 908 100 Plus
CG7841-PA 174 CG7841-PA 1..174 1..174 908 100 Plus