Clone Sequence Records
BO14228.3prime Sequence
849 bp (742 high quality bases) assembled on 2006-05-29
> BO14228.3prime
ATGGTCTAGAAAGCTTGCATATGTGAACTTCCACAGGTTCTTCCATGTCT
CGCGCTTGTACACATTCTTGTACGTCTGCACGGACACCTGGAACTCGGGG
CCAAACAAGGTGTTGGCCAAAACATTCTCCACAGCCAAATTTCGATTGGT
AACCGCGTGAACAATGACAAGCGGATTGTGTACTGGTATGGTCTTGCCTT
CGCTTTCGAATCGAAGATCGGGATCCTTGTGGGCGCAGAAGAAGTGAGTG
TGCGAAGTGGGCACACGGGCAGAGGGGCCACAATTCTTATGGGACACTAA
GCCGAGTGGAAGTGTAACCTCGCCGTTTTTGGTTGTAAAGAACGCCTTCT
CCACGGGAAGCGAGAGGTTCAGCCTCTTGGGACCGCTGAAAACATACATA
GGCTCATCAGCAGGCTCCAGGGCTTGCAGGCGGAACTTCTCGCCGTAGGC
CAGATACTGACCGGTACGGTCATCCTCGTTCGGACTGACGATTCTGAAGC
TGTTGCGCAACGCGGGACGCGGCGAAGGTGCCACCGTAAGATCACACATC
TCGTTGATGGTCTTGCAGTTGCGATGCAGTCCCTCCTGAGTAATTACCAC
CGAAAGCACCAGGTTCTGATCCGAAACCTGTTGGCGGCAGACACCGATCT
TCACGGGCCGGATCTGGACCACCACGCCGAAGGCCAGAACATCCTGCGGC
GGACCCAGCACTGTTCCCTGGTAGAAGCGGTCGTAGACGGCACGGGTCCT
GTCCAGCAGCAGGTTACCGCTCTCCCGACGCTTCTTCATTTCACTCATAC
GCATCTCCTCCGACAAGGCAGTTTCCAGCCAGTTACCCACTTTCACCCC
BO14228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 846 | CG15498-RA | 13..843 | 849..19 | 4130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 134..964 | 849..19 | 4140 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568852 | 286..806 | 2605 | 100 | Plus |
3R | 32079331 | 3R | 21567694..21567858 | 19..183 | 825 | 100 | Plus |
3R | 32079331 | 3R | 21568169..21568275 | 181..287 | 520 | 99.1 | Plus |
3R | 32079331 | 3R | 21568972..21569016 | 805..849 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:13:25 has no hits.
BO14228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:35 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 13..846 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:55 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 13..846 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:26 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 134..964 | 19..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:22 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 134..964 | 19..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:22 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21567694..21567858 | 19..183 | 100 | <- | Plus |
3R | 21568172..21568273 | 184..285 | 99 | <- | Plus |
3R | 21568332..21568850 | 286..804 | 100 | <- | Plus |
3R | 21568972..21569016 | 805..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:26 Download gff for
BO14228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17393416..17393580 | 19..183 | 100 | <- | Plus |
arm_3R | 17393894..17393995 | 184..285 | 99 | <- | Plus |
arm_3R | 17394054..17394572 | 286..804 | 100 | <- | Plus |
arm_3R | 17394694..17394738 | 805..849 | 100 | | Plus |
BO14228.5prime Sequence
874 bp (847 high quality bases) assembled on 2006-05-29
> BO14228.5prime
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TCACATATGCAAGCTTTCTAGACC
BO14228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 846 | CG15498-RA | 1..835 | 17..851 | 4150 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 122..964 | 17..858 | 4175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568852 | 592..72 | 2605 | 100 | Minus |
3R | 32079331 | 3R | 21567702..21567858 | 851..695 | 785 | 100 | Minus |
3R | 32079331 | 3R | 21568169..21568275 | 697..591 | 520 | 99.1 | Minus |
3R | 32079331 | 3R | 21568972..21569028 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:34:22 has no hits.
BO14228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:36 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:56 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:47:33 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..964 | 6..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:15 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..964 | 6..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:15 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21567694..21567858 | 695..858 | 99 | <- | Minus |
3R | 21568172..21568273 | 593..694 | 99 | <- | Minus |
3R | 21568332..21568850 | 74..592 | 100 | <- | Minus |
3R | 21568972..21569037 | 6..73 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:47:33 Download gff for
BO14228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17393416..17393580 | 695..858 | 99 | <- | Minus |
arm_3R | 17393894..17393995 | 593..694 | 99 | <- | Minus |
arm_3R | 17394054..17394572 | 74..592 | 100 | <- | Minus |
arm_3R | 17394694..17394759 | 6..73 | 92 | | Minus |
BO14228.complete Sequence
877 bp assembled on 2006-10-11
GenBank Submission: FJ633047
> BO14228.complete
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TTCACATATGCAAGCTTTCTAGACCAT
BO14228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 846 | CG15498-PA | 1..843 | 17..859 | 4200 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 122..964 | 17..859 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568852 | 592..72 | 2605 | 100 | Minus |
3R | 32079331 | 3R | 21567694..21567858 | 859..695 | 825 | 100 | Minus |
3R | 32079331 | 3R | 21568169..21568275 | 697..591 | 520 | 99.1 | Minus |
3R | 32079331 | 3R | 21568972..21569028 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:43 has no hits.
BO14228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:23 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:30 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..964 | 6..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:19 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 122..964 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:23 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..964 | 6..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:42 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 122..964 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:42 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21567691..21567858 | 695..861 | 98 | <- | Minus |
3R | 21568172..21568273 | 593..694 | 99 | <- | Minus |
3R | 21568332..21568850 | 74..592 | 100 | <- | Minus |
3R | 21568972..21569028 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:19 Download gff for
BO14228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17393413..17393580 | 695..861 | 98 | <- | Minus |
arm_3R | 17393894..17393995 | 593..694 | 99 | <- | Minus |
arm_3R | 17394054..17394572 | 74..592 | 100 | <- | Minus |
arm_3R | 17394694..17394750 | 17..73 | 100 | | Minus |
BO14228.pep Sequence
Translation from 16 to 877
> BO14228.pep
MYGPGVKVGNWLETALSEEMRMSEMKKRRESGNLLLDRTRAVYDRFYQGT
VLGPPQDVLAFGVVVQIRPVKIGVCRQQVSDQNLVLSVVITQEGLHRNCK
TINEMCDLTVAPSPRPALRNSFRIVSPNEDDRTGQYLAYGEKFRLQALEP
ADEPMYVFSGPKRLNLSLPVEKAFFTTKNGEVTLPLGLVSHKNCGPSARV
PTSHTHFFCAHKDPDLRFESEGKTIPVHNPLVIVHAVTNRNLAVENVLAN
TLFGPEFQVSVQTYKNVYKRETWKNLWKFTYASFLDH
BO14228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 281 | CG15498-PA | 1..281 | 1..281 | 1484 | 100 | Plus |
CG34457-PB | 308 | CG34457-PB | 15..290 | 2..277 | 701 | 47.3 | Plus |
CG34457-PA | 308 | CG34457-PA | 15..290 | 2..277 | 701 | 47.3 | Plus |