Clone BO14228 Report

Search the DGRC for BO14228

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG15498-RA
Protein status:BO14228.pep: validated full length
Sequenced Size:877

Clone Sequence Records

BO14228.3prime Sequence

849 bp (742 high quality bases) assembled on 2006-05-29

> BO14228.3prime
ATGGTCTAGAAAGCTTGCATATGTGAACTTCCACAGGTTCTTCCATGTCT
CGCGCTTGTACACATTCTTGTACGTCTGCACGGACACCTGGAACTCGGGG
CCAAACAAGGTGTTGGCCAAAACATTCTCCACAGCCAAATTTCGATTGGT
AACCGCGTGAACAATGACAAGCGGATTGTGTACTGGTATGGTCTTGCCTT
CGCTTTCGAATCGAAGATCGGGATCCTTGTGGGCGCAGAAGAAGTGAGTG
TGCGAAGTGGGCACACGGGCAGAGGGGCCACAATTCTTATGGGACACTAA
GCCGAGTGGAAGTGTAACCTCGCCGTTTTTGGTTGTAAAGAACGCCTTCT
CCACGGGAAGCGAGAGGTTCAGCCTCTTGGGACCGCTGAAAACATACATA
GGCTCATCAGCAGGCTCCAGGGCTTGCAGGCGGAACTTCTCGCCGTAGGC
CAGATACTGACCGGTACGGTCATCCTCGTTCGGACTGACGATTCTGAAGC
TGTTGCGCAACGCGGGACGCGGCGAAGGTGCCACCGTAAGATCACACATC
TCGTTGATGGTCTTGCAGTTGCGATGCAGTCCCTCCTGAGTAATTACCAC
CGAAAGCACCAGGTTCTGATCCGAAACCTGTTGGCGGCAGACACCGATCT
TCACGGGCCGGATCTGGACCACCACGCCGAAGGCCAGAACATCCTGCGGC
GGACCCAGCACTGTTCCCTGGTAGAAGCGGTCGTAGACGGCACGGGTCCT
GTCCAGCAGCAGGTTACCGCTCTCCCGACGCTTCTTCATTTCACTCATAC
GCATCTCCTCCGACAAGGCAGTTTCCAGCCAGTTACCCACTTTCACCCC

BO14228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 846 CG15498-RA 13..843 849..19 4130 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 134..964 849..19 4140 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568852 286..806 2605 100 Plus
3R 32079331 3R 21567694..21567858 19..183 825 100 Plus
3R 32079331 3R 21568169..21568275 181..287 520 99.1 Plus
3R 32079331 3R 21568972..21569016 805..849 225 100 Plus
Blast to na_te.dros performed on 2015-01-31 11:13:25 has no hits.

BO14228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:35 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 13..846 16..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:55 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 13..846 16..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:26 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 134..964 19..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:22 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 134..964 19..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:22 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21567694..21567858 19..183 100 <- Plus
3R 21568172..21568273 184..285 99 <- Plus
3R 21568332..21568850 286..804 100 <- Plus
3R 21568972..21569016 805..849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:26 Download gff for BO14228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17393416..17393580 19..183 100 <- Plus
arm_3R 17393894..17393995 184..285 99 <- Plus
arm_3R 17394054..17394572 286..804 100 <- Plus
arm_3R 17394694..17394738 805..849 100   Plus

BO14228.5prime Sequence

874 bp (847 high quality bases) assembled on 2006-05-29

> BO14228.5prime
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TCACATATGCAAGCTTTCTAGACC

BO14228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 846 CG15498-RA 1..835 17..851 4150 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 122..964 17..858 4175 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568852 592..72 2605 100 Minus
3R 32079331 3R 21567702..21567858 851..695 785 100 Minus
3R 32079331 3R 21568169..21568275 697..591 520 99.1 Minus
3R 32079331 3R 21568972..21569028 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:34:22 has no hits.

BO14228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:36 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:56 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:47:33 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..964 6..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:15 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..964 6..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:15 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21567694..21567858 695..858 99 <- Minus
3R 21568172..21568273 593..694 99 <- Minus
3R 21568332..21568850 74..592 100 <- Minus
3R 21568972..21569037 6..73 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:47:33 Download gff for BO14228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17393416..17393580 695..858 99 <- Minus
arm_3R 17393894..17393995 593..694 99 <- Minus
arm_3R 17394054..17394572 74..592 100 <- Minus
arm_3R 17394694..17394759 6..73 92   Minus

BO14228.complete Sequence

877 bp assembled on 2006-10-11

GenBank Submission: FJ633047

> BO14228.complete
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TTCACATATGCAAGCTTTCTAGACCAT

BO14228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 846 CG15498-PA 1..843 17..859 4200 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 122..964 17..859 4200 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568852 592..72 2605 100 Minus
3R 32079331 3R 21567694..21567858 859..695 825 100 Minus
3R 32079331 3R 21568169..21568275 697..591 520 99.1 Minus
3R 32079331 3R 21568972..21569028 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:26:43 has no hits.

BO14228.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:23 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:30 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..964 6..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:19 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 122..964 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:23 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..964 6..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:42 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 122..964 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:42 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21567691..21567858 695..861 98 <- Minus
3R 21568172..21568273 593..694 99 <- Minus
3R 21568332..21568850 74..592 100 <- Minus
3R 21568972..21569028 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:19 Download gff for BO14228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17393413..17393580 695..861 98 <- Minus
arm_3R 17393894..17393995 593..694 99 <- Minus
arm_3R 17394054..17394572 74..592 100 <- Minus
arm_3R 17394694..17394750 17..73 100   Minus

BO14228.pep Sequence

Translation from 16 to 877

> BO14228.pep
MYGPGVKVGNWLETALSEEMRMSEMKKRRESGNLLLDRTRAVYDRFYQGT
VLGPPQDVLAFGVVVQIRPVKIGVCRQQVSDQNLVLSVVITQEGLHRNCK
TINEMCDLTVAPSPRPALRNSFRIVSPNEDDRTGQYLAYGEKFRLQALEP
ADEPMYVFSGPKRLNLSLPVEKAFFTTKNGEVTLPLGLVSHKNCGPSARV
PTSHTHFFCAHKDPDLRFESEGKTIPVHNPLVIVHAVTNRNLAVENVLAN
TLFGPEFQVSVQTYKNVYKRETWKNLWKFTYASFLDH

BO14228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 281 CG15498-PA 1..281 1..281 1484 100 Plus
CG34457-PB 308 CG34457-PB 15..290 2..277 701 47.3 Plus
CG34457-PA 308 CG34457-PA 15..290 2..277 701 47.3 Plus