Clone BO14232 Report

Search the DGRC for BO14232

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptS-RA
Protein status:BO14232.pep: validated full length
Sequenced Size:1825

Clone Sequence Records

BO14232.3prime Sequence

757 bp (704 high quality bases) assembled on 2006-05-29

> BO14232.3prime
ATGGTCTAGAAAGCTTGCGGGCGTCTTCAGCAGCAGGATATCTTTTTTGC
GCGTGCGACTGGCGCTGGCATTGAGCCGCTGGTAGAAGTAGTTCCGACCG
ATCTTGCGCTGCAGCTTATAGGACTTGCCCGCCAGGAACCTGGTGATGTC
CAGCACGTAATCGGCCACGTCCTCGTGATCCTCGAGCAAATGTATCGATA
TCACATCGATTTTGACTTTGTCGAAGGGCAGCGTCTGCAAGATCTCCAGC
TCATGCCCCTGTACGCCCAGGCTGAGCAGATCGTATTCGGTGCGCTCACA
TGCCAGCATGATTGTGTAGAGCGGAAAGCATTTGACACGCGAGTTGAACC
ACGAGGTCTCCTCGTCGTGCAGACTATTGATGCGCACATCCTCGTTGTGT
ATGGTAATCTCTTTGGGATAGGTATTGGGCGAAACACAGGCGTGCACCAC
CTGCATGCGCGCCCGCTGGGCATTCTGCTTGCGCAACGTGAAGTACCAGC
GCGGCTCCGGCTCCACCAGCACGCCCATCCAGTTGAGCTGCTCGCTCAGC
CAGGGCGCCGTGATCAGATGGGCGAGAGGACCGCTCAGCGACTGGATCAC
CGCGCCGTTCATCTTGCCGCCCACTAAGTCGGCCACGTAGTGGGCCAGTT
GATCGGCTCCACTGCCGCTGCTGTTGCCACTACCGAATGTTGAGCCTGCG
GCGGCGAAGCGCGGCGAGTTGGGCGGCGGACCCACGCCCACTGAGGCCGC
TGCCGCG

BO14232.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4385-PB 1794 S-RB 1053..1791 757..19 3620 99.5 Minus
CG4385-PA 1794 S-RA 1053..1791 757..19 3620 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
S-RA 2267 CG4385-RA 1280..2018 757..19 3650 99.6 Minus
S-RB 5206 CG4385-RB 2101..2839 757..19 3650 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1052566..1052914 409..757 1700 99.1 Plus
2L 23513712 2L 1052041..1052267 19..245 1135 100 Plus
2L 23513712 2L 1052331..1052497 244..410 835 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:02:36 has no hits.

BO14232.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:21:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:05 Download gff for BO14232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4385-PA 1053..1794 18..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:10 Download gff for BO14232.3prime
Subject Subject Range Query Range Percent Splice Strand
S-RB 2101..2845 12..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:21 Download gff for BO14232.3prime
Subject Subject Range Query Range Percent Splice Strand
S-RB 2101..2845 12..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:21 Download gff for BO14232.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1052331..1052495 244..408 100 <- Plus
2L 1052035..1052265 12..243 98 <- Plus
2L 1052566..1052914 409..757 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:10 Download gff for BO14232.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1052035..1052265 12..243 98 <- Plus
arm_2L 1052331..1052495 244..408 100 <- Plus
arm_2L 1052566..1052914 409..757 99   Plus

BO14232.5prime Sequence

769 bp (758 high quality bases) assembled on 2006-05-29

> BO14232.5prime
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCACCACCACCATCACCCCCTCACGGCAGC
GGGTTGTACGGGCGGAGGA

BO14232.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4385-PB 1794 S-RB 1..753 17..769 3740 99.8 Plus
CG4385-PA 1794 S-RA 1..753 17..769 3740 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
S-RA 2267 CG4385-RA 227..980 16..769 3755 99.9 Plus
S-RB 5206 CG4385-RB 1048..1801 16..769 3755 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1061394..1062147 769..16 3755 99.9 Minus
Blast to na_te.dros performed 2015-02-11 09:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2510 592..752 142 58.2 Plus

BO14232.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:21:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:06 Download gff for BO14232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4385-PA 1..752 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:04 Download gff for BO14232.5prime
Subject Subject Range Query Range Percent Splice Strand
S-RB 1040..1800 7..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:05 Download gff for BO14232.5prime
Subject Subject Range Query Range Percent Splice Strand
S-RB 1040..1800 7..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:05 Download gff for BO14232.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1061395..1062155 7..768 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:04 Download gff for BO14232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1061395..1062155 7..768 99   Minus

BO14232.complete Sequence

1825 bp assembled on 2007-11-30

GenBank Submission: FJ633049

> BO14232.complete
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCACCACCACCATCACCACCTCACGGCAGC
GGGTTGTACGGGCGGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGAT
CCTGCAAGGCGAAGAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGC
CAGCTATTGCCCATCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGC
CACATTAATAGTTTACATGGACACGACAGAGATTCGCCATCAGCAGTTTC
GGCTAAACATGTCGCGCGACTACGAGCTGAATGGGGTTGCGCAAGACGAT
CCCGCACTCATTGATTTCCTGCGCCAGATCCACATGGGCAAGTACCTGGG
CAAGGCGTCGCCCAAGGTCGCGGCAGCGGCCTCAGTGGGCGTGGGTCCGC
CGCCCAACTCGCCGCGCCTCGCCGCCGCAGGCTCAACATTCGGTAGTGGC
AACAGCAGCGGCAGTGGAGCCGATCAACTGGCCCACTACGTGGCCGACCT
AGTGGGCGGCAAGATGAACGGCGCGGTGATCCAGTCGCTGAGCGGTCCTC
TCGCCCATCTGATCACGGCGCCCTGGCTGAGCGAGCAGCTCAACTGGATG
GGCGTGCTGGTGGAGCCGGAGCCGCGCTGGTACTTCACGTTGCGCAAGCA
GAATGCCCAGCGGGCGCGCATGCAGGTGGTGCACGCCTGTGTTTCGCCCA
ATACCTATCCCAAAGAGATTACCATACACAACGAGGATGTGCGCATCAAT
AGTCTGCACGACGAGGAGACCTCGTGGTTCAACTCGCGTGTCAAATGCTT
TCCGCTCTACACAATCATGCTGGCATGTGAGCGCACCGAATACGATCTGC
TCAGCCTGGGCGTACAGGGGCATGAGCTGGAGATCTTGCAGACGCTGCCC
TTCGACAAAGTCAAAATCGATGTGATATCGATACATTTGCTCGAGGATCA
CGAGGACGTGGCCGATTACGTGCTGGACATCACCAGGTTCCTGGCGGGCA
AGTCCTATAAGCTGCAGCGCAAGATCGGTCGGAACTACTTCTACCAGCGG
CTCAATGCCAGCGCCAGTCGCACGCGCAAAAAAGATATCCTGCTGCTGAA
GACGCCCGCAAGCTTTCTAGACCAT

BO14232.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
S-RA 1794 CG4385-PA 1..1791 17..1807 8940 99.9 Plus
S-RB 1794 CG4385-PB 1..1791 17..1807 8940 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
S-RA 2267 CG4385-RA 227..2018 16..1807 8945 99.9 Plus
S-RB 5206 CG4385-RB 1048..2839 16..1807 8945 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1061234..1062147 929..16 4570 100 Minus
2L 23513712 2L 1052566..1053056 1417..927 2440 99.8 Minus
2L 23513712 2L 1052041..1052267 1807..1581 1135 100 Minus
2L 23513712 2L 1052331..1052497 1582..1416 835 100 Minus
Blast to na_te.dros performed 2014-11-27 13:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2510 592..752 151 58.8 Plus

BO14232.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:23 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 1..1794 17..1808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:36 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 219..2024 7..1814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:46 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
S-RB 1049..2839 17..1809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:06 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 228..2018 17..1809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:02 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
S-RB 1049..2839 17..1809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:02 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1052039..1052265 1583..1809 99 <- Minus
2L 1052331..1052495 1418..1582 100 <- Minus
2L 1052566..1053053 930..1417 99 <- Minus
2L 1061234..1062146 17..929 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:46 Download gff for BO14232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1052039..1052265 1583..1809 99 <- Minus
arm_2L 1052331..1052495 1418..1582 100 <- Minus
arm_2L 1052566..1053053 930..1417 99 <- Minus
arm_2L 1061234..1062146 17..929 100   Minus

BO14232.pep Sequence

Translation from 16 to 1825

> BO14232.pep
MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK
FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD
DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT
SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ
LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG
GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY
MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK
VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM
NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA
RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI
MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD
YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTPASF
LDH

BO14232.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
S-PA 597 CG4385-PA 1..597 1..597 3157 100 Plus
S-PB 597 CG4385-PB 1..597 1..597 3157 100 Plus