Clone Sequence Records
BO14232.3prime Sequence
757 bp (704 high quality bases) assembled on 2006-05-29
> BO14232.3prime
ATGGTCTAGAAAGCTTGCGGGCGTCTTCAGCAGCAGGATATCTTTTTTGC
GCGTGCGACTGGCGCTGGCATTGAGCCGCTGGTAGAAGTAGTTCCGACCG
ATCTTGCGCTGCAGCTTATAGGACTTGCCCGCCAGGAACCTGGTGATGTC
CAGCACGTAATCGGCCACGTCCTCGTGATCCTCGAGCAAATGTATCGATA
TCACATCGATTTTGACTTTGTCGAAGGGCAGCGTCTGCAAGATCTCCAGC
TCATGCCCCTGTACGCCCAGGCTGAGCAGATCGTATTCGGTGCGCTCACA
TGCCAGCATGATTGTGTAGAGCGGAAAGCATTTGACACGCGAGTTGAACC
ACGAGGTCTCCTCGTCGTGCAGACTATTGATGCGCACATCCTCGTTGTGT
ATGGTAATCTCTTTGGGATAGGTATTGGGCGAAACACAGGCGTGCACCAC
CTGCATGCGCGCCCGCTGGGCATTCTGCTTGCGCAACGTGAAGTACCAGC
GCGGCTCCGGCTCCACCAGCACGCCCATCCAGTTGAGCTGCTCGCTCAGC
CAGGGCGCCGTGATCAGATGGGCGAGAGGACCGCTCAGCGACTGGATCAC
CGCGCCGTTCATCTTGCCGCCCACTAAGTCGGCCACGTAGTGGGCCAGTT
GATCGGCTCCACTGCCGCTGCTGTTGCCACTACCGAATGTTGAGCCTGCG
GCGGCGAAGCGCGGCGAGTTGGGCGGCGGACCCACGCCCACTGAGGCCGC
TGCCGCG
BO14232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4385-PB | 1794 | S-RB | 1053..1791 | 757..19 | 3620 | 99.5 | Minus |
CG4385-PA | 1794 | S-RA | 1053..1791 | 757..19 | 3620 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 1280..2018 | 757..19 | 3650 | 99.6 | Minus |
S-RB | 5206 | CG4385-RB | 2101..2839 | 757..19 | 3650 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1052566..1052914 | 409..757 | 1700 | 99.1 | Plus |
2L | 23513712 | 2L | 1052041..1052267 | 19..245 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 1052331..1052497 | 244..410 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:02:36 has no hits.
BO14232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:21:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:05 Download gff for
BO14232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4385-PA | 1053..1794 | 18..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:10 Download gff for
BO14232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 2101..2845 | 12..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:21 Download gff for
BO14232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 2101..2845 | 12..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:21 Download gff for
BO14232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1052331..1052495 | 244..408 | 100 | <- | Plus |
2L | 1052035..1052265 | 12..243 | 98 | <- | Plus |
2L | 1052566..1052914 | 409..757 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:10 Download gff for
BO14232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1052035..1052265 | 12..243 | 98 | <- | Plus |
arm_2L | 1052331..1052495 | 244..408 | 100 | <- | Plus |
arm_2L | 1052566..1052914 | 409..757 | 99 | | Plus |
BO14232.5prime Sequence
769 bp (758 high quality bases) assembled on 2006-05-29
> BO14232.5prime
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCACCACCACCATCACCCCCTCACGGCAGC
GGGTTGTACGGGCGGAGGA
BO14232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4385-PB | 1794 | S-RB | 1..753 | 17..769 | 3740 | 99.8 | Plus |
CG4385-PA | 1794 | S-RA | 1..753 | 17..769 | 3740 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 227..980 | 16..769 | 3755 | 99.9 | Plus |
S-RB | 5206 | CG4385-RB | 1048..1801 | 16..769 | 3755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1061394..1062147 | 769..16 | 3755 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 09:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2510 | 592..752 | 142 | 58.2 | Plus |
BO14232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:21:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:06 Download gff for
BO14232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4385-PA | 1..752 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:04 Download gff for
BO14232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1040..1800 | 7..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:05 Download gff for
BO14232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1040..1800 | 7..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:05 Download gff for
BO14232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1061395..1062155 | 7..768 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:04 Download gff for
BO14232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1061395..1062155 | 7..768 | 99 | | Minus |
BO14232.complete Sequence
1825 bp assembled on 2007-11-30
GenBank Submission: FJ633049
> BO14232.complete
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCACCACCACCATCACCACCTCACGGCAGC
GGGTTGTACGGGCGGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGAT
CCTGCAAGGCGAAGAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGC
CAGCTATTGCCCATCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGC
CACATTAATAGTTTACATGGACACGACAGAGATTCGCCATCAGCAGTTTC
GGCTAAACATGTCGCGCGACTACGAGCTGAATGGGGTTGCGCAAGACGAT
CCCGCACTCATTGATTTCCTGCGCCAGATCCACATGGGCAAGTACCTGGG
CAAGGCGTCGCCCAAGGTCGCGGCAGCGGCCTCAGTGGGCGTGGGTCCGC
CGCCCAACTCGCCGCGCCTCGCCGCCGCAGGCTCAACATTCGGTAGTGGC
AACAGCAGCGGCAGTGGAGCCGATCAACTGGCCCACTACGTGGCCGACCT
AGTGGGCGGCAAGATGAACGGCGCGGTGATCCAGTCGCTGAGCGGTCCTC
TCGCCCATCTGATCACGGCGCCCTGGCTGAGCGAGCAGCTCAACTGGATG
GGCGTGCTGGTGGAGCCGGAGCCGCGCTGGTACTTCACGTTGCGCAAGCA
GAATGCCCAGCGGGCGCGCATGCAGGTGGTGCACGCCTGTGTTTCGCCCA
ATACCTATCCCAAAGAGATTACCATACACAACGAGGATGTGCGCATCAAT
AGTCTGCACGACGAGGAGACCTCGTGGTTCAACTCGCGTGTCAAATGCTT
TCCGCTCTACACAATCATGCTGGCATGTGAGCGCACCGAATACGATCTGC
TCAGCCTGGGCGTACAGGGGCATGAGCTGGAGATCTTGCAGACGCTGCCC
TTCGACAAAGTCAAAATCGATGTGATATCGATACATTTGCTCGAGGATCA
CGAGGACGTGGCCGATTACGTGCTGGACATCACCAGGTTCCTGGCGGGCA
AGTCCTATAAGCTGCAGCGCAAGATCGGTCGGAACTACTTCTACCAGCGG
CTCAATGCCAGCGCCAGTCGCACGCGCAAAAAAGATATCCTGCTGCTGAA
GACGCCCGCAAGCTTTCTAGACCAT
BO14232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 1794 | CG4385-PA | 1..1791 | 17..1807 | 8940 | 99.9 | Plus |
S-RB | 1794 | CG4385-PB | 1..1791 | 17..1807 | 8940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 227..2018 | 16..1807 | 8945 | 99.9 | Plus |
S-RB | 5206 | CG4385-RB | 1048..2839 | 16..1807 | 8945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1061234..1062147 | 929..16 | 4570 | 100 | Minus |
2L | 23513712 | 2L | 1052566..1053056 | 1417..927 | 2440 | 99.8 | Minus |
2L | 23513712 | 2L | 1052041..1052267 | 1807..1581 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 1052331..1052497 | 1582..1416 | 835 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2510 | 592..752 | 151 | 58.8 | Plus |
BO14232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:23 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 1..1794 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:36 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 219..2024 | 7..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:46 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1049..2839 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:06 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 228..2018 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:02 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1049..2839 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:02 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1052039..1052265 | 1583..1809 | 99 | <- | Minus |
2L | 1052331..1052495 | 1418..1582 | 100 | <- | Minus |
2L | 1052566..1053053 | 930..1417 | 99 | <- | Minus |
2L | 1061234..1062146 | 17..929 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:46 Download gff for
BO14232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1052039..1052265 | 1583..1809 | 99 | <- | Minus |
arm_2L | 1052331..1052495 | 1418..1582 | 100 | <- | Minus |
arm_2L | 1052566..1053053 | 930..1417 | 99 | <- | Minus |
arm_2L | 1061234..1062146 | 17..929 | 100 | | Minus |
BO14232.pep Sequence
Translation from 16 to 1825
> BO14232.pep
MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK
FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD
DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT
SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ
LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG
GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY
MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK
VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM
NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA
RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI
MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD
YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTPASF
LDH
BO14232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-PA | 597 | CG4385-PA | 1..597 | 1..597 | 3157 | 100 | Plus |
S-PB | 597 | CG4385-PB | 1..597 | 1..597 | 3157 | 100 | Plus |