Clone Sequence Records
BO14233.3prime Sequence
858 bp (769 high quality bases) assembled on 2006-05-29
> BO14233.3prime
ATGGTCTAGAAAGCTTGCGTTGAGAGAGTCCTCCTCCGGATCGGAATCGC
GTCGCGAGGTGGGAGCCGATGCATCCACCTCCAGATAGTCGTGCACCAGC
TGGCAAATGTTCTCGGAGGCCTCGTTGAAGTTGCCCTCCTCGAGTCCTTC
GCCCACATAGTGATAGACGAAGGCTCGCCGCTGATAGAGCTTGTCGAACT
TGTTGACCAGGCGGCACCAGGCGATCCGGATGTTCGTGTTGTTCGAGATG
GCCACGCAGGCGCGATTGGTGGGCGCCAGATCGCCGCCAGGAACATAGTA
CGGCGGCATGGGGCTAACGCCGATCTTAAAGCCCGTGGGCGACCAGTCGA
CAAAACGGAAAGACCTGTTCCGCTTGATGTTCTCCAGCGCCGTATTGATC
TCATTGGGTGCGATATCACCGCGGTAGAGCAGCACACTGGCCATGTACTT
GCCATGCGAGGGATTGCATCTGACCATTTGGTTGCTCATCTGGAAACACT
GACCCGTTAGCTGGGCCGTCGACATATTGACGAACTGCGAGTGCGAAATG
GGTACCAGTGGTGCGTAGTTGATCAGCGGATAGTGGATTCGGGGATATGG
CACCAGGTTCGTCTGCAGCTCCTGAAAACTCACGGTCGATCCGCCACCAA
AACGCTGTGAGGCCGTAAAGCTGGAAACCACTTGTGCGATGATCCTATTG
AGATTCGTATATGTGGGAGCAGGGACATTGAGTGTATTAGCACATATGTC
GTATAGAGCTTCATTGTCCACAATAAACGATACATCGGCGCAGTCCATGG
AGAAATGGGCAGCCAGCAATGCGTTGTAGGGTTCCCACATAACCGGAGAG
ATTGAAGG
BO14233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-PA | 1368 | CG7794-RA | 549..1365 | 835..19 | 4010 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1549 | CG7794-RA | 628..1467 | 858..19 | 4110 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18024462..18025296 | 853..19 | 4085 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:39:07 has no hits.
BO14233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:45 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-PA | 526..1368 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:07 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-PA | 526..1368 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:56:10 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 628..1472 | 14..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:49 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 628..1472 | 14..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:49 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18024457..18025301 | 14..858 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:56:10 Download gff for
BO14233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13850179..13851023 | 14..858 | 98 | | Minus |
BO14233.5prime Sequence
927 bp (784 high quality bases) assembled on 2006-05-29
> BO14233.5prime
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCAATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTT
TGGTGGCGGATCGACCGTGAGTTTTCAGGAGCTGCAGACGAACCTGGTGC
CATATCCCCGAATCCACTATCCGCTGATCAACTACGCACCACTGGTACCC
ATTTCGCACTCGCAGTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCA
GTGTTTTCAGATGAGCAACCAAATGGT
BO14233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-PA | 1368 | CG7794-RA | 1..911 | 17..927 | 4455 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1549 | CG7794-RA | 101..1013 | 15..927 | 4505 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18024462..18024842 | 547..927 | 1875 | 99.5 | Plus |
| 3R | 32079331 | 3R | 18024091..18024396 | 241..546 | 1500 | 99.3 | Plus |
| 3R | 32079331 | 3R | 18023807..18024034 | 15..242 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:02:38 has no hits.
BO14233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:46 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:09 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:30 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1013 | 6..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:21 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1013 | 6..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:21 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18023801..18024034 | 6..242 | 98 | -> | Plus |
| 3R | 18024093..18024396 | 243..546 | 99 | -> | Plus |
| 3R | 18024462..18024842 | 547..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:30 Download gff for
BO14233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13849523..13849756 | 6..242 | 98 | -> | Plus |
| arm_3R | 13849815..13850118 | 243..546 | 99 | -> | Plus |
| arm_3R | 13850184..13850564 | 547..927 | 99 | | Plus |
BO14233.complete Sequence
1399 bp assembled on 2006-10-11
GenBank Submission: FJ633050
> BO14233.complete
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCAATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTT
TGGTGGCGGATCGACCGTGAGTTTTCAGGAGCTGCAGACGAACCTGGTGC
CATATCCCCGAATCCACTATCCGCTGATCAACTACGCACCACTGGTACCC
ATTTCGCACTCGCAGTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCA
GTGTTTCCAGATGAGCAACCAAATGGTCAGATGCAATCCCTCGCATGGCA
AGTACATGGCCAGTGTGCTGCTCTACCGCGGTGATATCGCACCCAATGAG
ATCAATACGGCGCTGGAGAACATCAAGCGGAACAGGTCTTTCCGTTTTGT
CGACTGGTCGCCCACGGGCTTTAAGATCGGCGTTAGCCCCATGCCGCCGT
ACTATGTTCCTGGCGGCGATCTGGCGCCCACCAATCGCGCCTGCGTGGCC
ATCTCGAACAACACGAACATCCGGATCGCCTGGTGCCGCCTGGTCAACAA
GTTCGACAAGCTCTATCAGCGGCGAGCCTTCGTCTATCACTATGTGGGCG
AAGGACTCGAGGAGGGCAACTTCAACGAGGCCTCCGAGAACATTTGCCAG
CTGGTGCACGACTATCTGGAGGTGGATGCATCGGCTCCCACCTCGCGACG
CGATTCCGATCCGGAGGAGGACTCTCTCAACGCAAGCTTTCTAGACCAT
BO14233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1368 | CG7794-PA | 1..1365 | 17..1381 | 6765 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1549 | CG7794-RA | 101..1467 | 15..1381 | 6775 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18024462..18025296 | 547..1381 | 4145 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18024091..18024396 | 241..546 | 1500 | 99.3 | Plus |
| 3R | 32079331 | 3R | 18023807..18024034 | 15..242 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:51 has no hits.
BO14233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:56 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 1..1368 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:08 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1472 | 6..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:49 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 103..1467 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:57 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1472 | 6..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:12 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 103..1467 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:12 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18023809..18024034 | 17..242 | 100 | -> | Plus |
| 3R | 18024093..18024396 | 243..546 | 99 | -> | Plus |
| 3R | 18024462..18025296 | 547..1383 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:49 Download gff for
BO14233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13849531..13849756 | 17..242 | 100 | -> | Plus |
| arm_3R | 13849815..13850118 | 243..546 | 99 | -> | Plus |
| arm_3R | 13850184..13851018 | 547..1383 | 99 | | Plus |
BO14233.pep Sequence
Translation from 16 to 1399
> BO14233.pep
MSGKGEIIQIHIGQAGVQIANACWELFCLEHGILANGRLTQSPMDDSFLT
FFEFTSHQPCVQPRLVMIDTEPTVIDEIRTGSYRNLFHPDTLITGKDDSG
SNFARGYNLMASELLDRSMNAIRRVADRCRNLRGFLVFRAIGGGSGSGLG
TRIMERLVEDFGKKMTVVEFLVYPSPSISPVIVEPYNALLAAHFSMDCAD
VSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQRFGGGST
VSFQELQTNLVPYPRIHYPLINYAPLVPISHSQFVNMSTAQLTGQCFQMS
NQMVRCNPSHGKYMASVLLYRGDIAPNEINTALENIKRNRSFRFVDWSPT
GFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLY
QRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEVDASAPTSRRDSDPE
EDSLNASFLDH
BO14233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-PA | 455 | CG7794-PA | 1..455 | 1..455 | 2397 | 100 | Plus |
| alphaTub84B-PA | 450 | CG1913-PA | 3..435 | 6..436 | 1279 | 53.6 | Plus |
| alphaTub84D-PA | 450 | CG2512-PA | 3..435 | 6..436 | 1270 | 53.6 | Plus |
| alphaTub85E-PA | 449 | CG9476-PA | 3..441 | 6..442 | 1264 | 52.8 | Plus |
| alphaTub67C-PA | 462 | CG8308-PA | 3..461 | 6..451 | 1158 | 48.8 | Plus |
