Clone BO14236 Report

Search the DGRC for BO14236

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG11710-RA
Protein status:BO14236.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO14236.3prime Sequence

851 bp (808 high quality bases) assembled on 2006-05-29

> BO14236.3prime
ATGGTCTAGAAAGCTTGCGCAGACTGCTTGTGGGATAATGACTTGGAAAC
TTAATGTCGGGATCTTGTAAAAGCCCTCCATTTGCGCAATGTCTTCGGCG
TGCGGCTCCTTGGAAGTGGAGGCGATCCACAGTCTACCACGGTGCTCGCT
GTACCACACTCGACCCTCGTGTTTCTTAATGCCCGCCACTAGAAGCGAAG
CCCAGGGCTGATGCATCGACAGACACTGGCGCATGTCCTGCATTTCCAGC
AGCTCCTTGTCCTGCACCCGATTGTAGGTCCTCTCCAGCCAATCGCTGCC
TGCTGCAGGAGCTGGCCAACTCTTGGATTCCTTACTGGGCTTGTAGACCG
GCGGCTTGGTCATGTTCAAATGTGGTGCCAGTGTCAAGGCGGAGTGGCCG
GTGACCGAGGATGCACTCCAGTTGGATCCAACACCCGAGGCTTTAGAAAC
GGCTGCTAGTTCGCTGATCACCTGCTGCTCGTACTCTTTGGAGATGGTCG
GTTCCTCCGGCAACTCTCGGCCAGCGAAGTCCACCCGGATCTTCCGCTTC
ATGCGACTGCCGTGCTTTACCTCCTCCATTTCTCGGTGCAGTTTCTCAAA
CTTTTCGCGCTCAGCGTCGCTCAGCCACACGGAGTTCTCCTGAAAGTAGT
CCAGCTCATCGTCGATAACTGTGGTCCTCTTCTCGCTGTTCTTGTCGTAC
TCCAGCAGACGATCCCTTTGGGCCAAGGCCTTGTCCAGCGCCTGCGTGGA
CAGTTCCTTGGTGGATTTTTTGCCCTGCTTGGCGGCGCTCTTCGTGCCGC
CCTTCTCCCTGGCCGCCTTGGCCAGCTGCTGCTCCTCCTCGGGCGTGCGC
A

BO14236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 1311 CG11710-RA 476..1308 851..19 4165 100 Minus
CG11710-PB 1542 CG11710-RB 476..1263 851..64 3940 100 Minus
CG11710-PB 1542 CG11710-RB 1276..1321 64..19 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1766 CG11710-RA 579..1411 851..19 4165 100 Minus
CG11710-RC 1903 CG11710-RC 579..1424 851..19 4025 98.5 Minus
CG11710-RB 1779 CG11710-RB 579..1424 851..19 4025 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428233..20428705 173..645 2350 99.8 Plus
X 23542271 X 20428818..20429030 639..851 1065 100 Plus
X 23542271 X 20428064..20428172 64..172 545 100 Plus
X 23542271 X 20427950..20427996 19..65 235 100 Plus
Blast to na_te.dros performed 2015-02-06 11:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10331..10370 789..750 110 75 Minus

BO14236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:52 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 477..1311 18..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:16 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 477..1311 18..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:09 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 580..1417 12..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:53 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 580..1417 12..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:53 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20428064..20428172 64..172 100 <- Plus
X 20428819..20429029 640..850 100   Plus
X 20427944..20427994 12..63 94 <- Plus
X 20428233..20428699 173..639 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:09 Download gff for BO14236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20298971..20299021 12..63 94 <- Plus
arm_X 20299091..20299199 64..172 100 <- Plus
arm_X 20299260..20299726 173..639 100 <- Plus
arm_X 20299846..20300056 640..850 100   Plus

BO14236.5prime Sequence

834 bp (764 high quality bases) assembled on 2006-05-29

> BO14236.5prime
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAAAAGTTGC

BO14236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PB 1542 CG11710-RB 1..810 17..826 4050 100 Plus
CG11710-PA 1311 CG11710-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RC 1903 CG11710-RC 100..913 13..826 4055 99.9 Plus
CG11710-RA 1766 CG11710-RA 100..913 13..826 4055 99.9 Plus
CG11710-RB 1779 CG11710-RB 100..913 13..826 4055 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428818..20429437 704..85 3100 100 Minus
X 23542271 X 20428577..20428705 826..698 630 99.2 Minus
X 23542271 X 20429502..20429574 85..13 350 98.6 Minus
Blast to na_te.dros performed 2015-02-02 08:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10331..10370 554..593 110 75 Plus

BO14236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:52 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 1..817 17..834 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:18 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 1..817 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:48:25 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 100..920 13..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:47 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 100..920 13..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:47 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20428570..20428699 704..834 98 <- Minus
X 20428819..20429437 85..703 100 <- Minus
X 20429503..20429574 13..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:48:25 Download gff for BO14236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20299597..20299726 704..834 98 <- Minus
arm_X 20299846..20300464 85..703 100 <- Minus
arm_X 20300530..20300601 13..84 98   Minus

BO14236.complete Sequence

1342 bp assembled on 2006-10-11

GenBank Submission: FJ633051

> BO14236.complete
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAGAGTTGCCGGAGGAACCGACCATC
TCCAAAGAGTACGAGCAGCAGGTGATCAGCGAACTAGCAGCCGTTTCTAA
AGCCTCGGGTGTTGGATCCAACTGGAGTGCATCCTCGGTCACCGGCCACT
CCGCCTTGACACTGGCACCACATTTGAACATGACCAAGCCGCCGGTCTAC
AAGCCCAGTAAGGAATCCAAGAGTTGGCCAGCTCCTGCAGCAGGCAGCGA
TTGGCTGGAGAGGACCTACAATCGGGTGCAGGACAAGGAGCTGCTGGAAA
TGCAGGACATGCGCCAGTGTCTGTCGATGCATCAGCCCTGGGCTTCGCTT
CTAGTGGCGGGCATTAAGAAACACGAGGGTCGAGTGTGGTACAGCGAGCA
CCGTGGTAGACTGTGGATCGCCTCCACTTCCAAGGAGCCGCACGCCGAAG
ACATTGCGCAAATGGAGGGCTTTTACAAGATCCCGACATTAAGTTTCCAA
GTCATTATCCCACAAGCAGTCTGCGCAAGCTTTCTAGACCAT

BO14236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1311 CG11710-PA 1..1308 17..1324 6540 100 Plus
CG11710-RC 1542 CG11710-PC 1..1321 17..1324 6375 99 Plus
CG11710-RB 1542 CG11710-PB 1..1321 17..1324 6375 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1766 CG11710-RA 100..1411 13..1324 6545 99.9 Plus
CG11710-RC 1903 CG11710-RC 100..1424 13..1324 6380 98.9 Plus
CG11710-RB 1779 CG11710-RB 100..1424 13..1324 6380 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428818..20429437 704..85 3100 100 Minus
X 23542271 X 20428233..20428705 1170..698 2350 99.8 Minus
X 23542271 X 20428064..20428172 1279..1171 545 100 Minus
X 23542271 X 20429502..20429574 85..13 350 98.6 Minus
X 23542271 X 20427950..20427996 1324..1278 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:06:44 has no hits.

BO14236.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:59 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1311 17..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:10 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 26..1343 13..1331 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:18 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 104..1411 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:59 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 26..1343 13..1331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:03 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 104..1411 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:03 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
X 20427948..20427994 1280..1326 95 <- Minus
X 20428064..20428172 1171..1279 100 <- Minus
X 20428233..20428699 704..1170 100 <- Minus
X 20428819..20429437 85..703 100 <- Minus
X 20429503..20429570 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:18 Download gff for BO14236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20298975..20299021 1280..1326 95 <- Minus
arm_X 20299091..20299199 1171..1279 100 <- Minus
arm_X 20299260..20299726 704..1170 100 <- Minus
arm_X 20299846..20300464 85..703 100 <- Minus
arm_X 20300530..20300597 17..84 100   Minus

BO14236.pep Sequence

Translation from 16 to 1342

> BO14236.pep
MENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNLLSEDNEEHR
MFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISKGAKGKSGKH
VNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGRIVCEQEGSG
PCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKELSTQALDKA
LAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAEREKFEKLHREM
EEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELAAVSKASGVG
SNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPAAGSDWLERT
YNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLW
IASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVCASFLDH

BO14236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 436 CG11710-PA 1..436 1..436 2308 100 Plus
CG11710-PC 513 CG11710-PC 1..422 1..422 2235 99.8 Plus
CG11710-PB 513 CG11710-PB 1..422 1..422 2235 99.8 Plus