Clone Sequence Records
BO14236.3prime Sequence
851 bp (808 high quality bases) assembled on 2006-05-29
> BO14236.3prime
ATGGTCTAGAAAGCTTGCGCAGACTGCTTGTGGGATAATGACTTGGAAAC
TTAATGTCGGGATCTTGTAAAAGCCCTCCATTTGCGCAATGTCTTCGGCG
TGCGGCTCCTTGGAAGTGGAGGCGATCCACAGTCTACCACGGTGCTCGCT
GTACCACACTCGACCCTCGTGTTTCTTAATGCCCGCCACTAGAAGCGAAG
CCCAGGGCTGATGCATCGACAGACACTGGCGCATGTCCTGCATTTCCAGC
AGCTCCTTGTCCTGCACCCGATTGTAGGTCCTCTCCAGCCAATCGCTGCC
TGCTGCAGGAGCTGGCCAACTCTTGGATTCCTTACTGGGCTTGTAGACCG
GCGGCTTGGTCATGTTCAAATGTGGTGCCAGTGTCAAGGCGGAGTGGCCG
GTGACCGAGGATGCACTCCAGTTGGATCCAACACCCGAGGCTTTAGAAAC
GGCTGCTAGTTCGCTGATCACCTGCTGCTCGTACTCTTTGGAGATGGTCG
GTTCCTCCGGCAACTCTCGGCCAGCGAAGTCCACCCGGATCTTCCGCTTC
ATGCGACTGCCGTGCTTTACCTCCTCCATTTCTCGGTGCAGTTTCTCAAA
CTTTTCGCGCTCAGCGTCGCTCAGCCACACGGAGTTCTCCTGAAAGTAGT
CCAGCTCATCGTCGATAACTGTGGTCCTCTTCTCGCTGTTCTTGTCGTAC
TCCAGCAGACGATCCCTTTGGGCCAAGGCCTTGTCCAGCGCCTGCGTGGA
CAGTTCCTTGGTGGATTTTTTGCCCTGCTTGGCGGCGCTCTTCGTGCCGC
CCTTCTCCCTGGCCGCCTTGGCCAGCTGCTGCTCCTCCTCGGGCGTGCGC
A
BO14236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PA | 1311 | CG11710-RA | 476..1308 | 851..19 | 4165 | 100 | Minus |
CG11710-PB | 1542 | CG11710-RB | 476..1263 | 851..64 | 3940 | 100 | Minus |
CG11710-PB | 1542 | CG11710-RB | 1276..1321 | 64..19 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1766 | CG11710-RA | 579..1411 | 851..19 | 4165 | 100 | Minus |
CG11710-RC | 1903 | CG11710-RC | 579..1424 | 851..19 | 4025 | 98.5 | Minus |
CG11710-RB | 1779 | CG11710-RB | 579..1424 | 851..19 | 4025 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428233..20428705 | 173..645 | 2350 | 99.8 | Plus |
X | 23542271 | X | 20428818..20429030 | 639..851 | 1065 | 100 | Plus |
X | 23542271 | X | 20428064..20428172 | 64..172 | 545 | 100 | Plus |
X | 23542271 | X | 20427950..20427996 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 11:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10331..10370 | 789..750 | 110 | 75 | Minus |
BO14236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:52 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 477..1311 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:16 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 477..1311 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:09 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 580..1417 | 12..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:53 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 580..1417 | 12..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:53 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20428064..20428172 | 64..172 | 100 | <- | Plus |
X | 20428819..20429029 | 640..850 | 100 | | Plus |
X | 20427944..20427994 | 12..63 | 94 | <- | Plus |
X | 20428233..20428699 | 173..639 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:09 Download gff for
BO14236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20298971..20299021 | 12..63 | 94 | <- | Plus |
arm_X | 20299091..20299199 | 64..172 | 100 | <- | Plus |
arm_X | 20299260..20299726 | 173..639 | 100 | <- | Plus |
arm_X | 20299846..20300056 | 640..850 | 100 | | Plus |
BO14236.5prime Sequence
834 bp (764 high quality bases) assembled on 2006-05-29
> BO14236.5prime
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAAAAGTTGC
BO14236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PB | 1542 | CG11710-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
CG11710-PA | 1311 | CG11710-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RC | 1903 | CG11710-RC | 100..913 | 13..826 | 4055 | 99.9 | Plus |
CG11710-RA | 1766 | CG11710-RA | 100..913 | 13..826 | 4055 | 99.9 | Plus |
CG11710-RB | 1779 | CG11710-RB | 100..913 | 13..826 | 4055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428818..20429437 | 704..85 | 3100 | 100 | Minus |
X | 23542271 | X | 20428577..20428705 | 826..698 | 630 | 99.2 | Minus |
X | 23542271 | X | 20429502..20429574 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed 2015-02-02 08:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10331..10370 | 554..593 | 110 | 75 | Plus |
BO14236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:52 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 1..817 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:18 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 1..817 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:48:25 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RB | 100..920 | 13..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:47 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RB | 100..920 | 13..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:47 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20428570..20428699 | 704..834 | 98 | <- | Minus |
X | 20428819..20429437 | 85..703 | 100 | <- | Minus |
X | 20429503..20429574 | 13..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:48:25 Download gff for
BO14236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20299597..20299726 | 704..834 | 98 | <- | Minus |
arm_X | 20299846..20300464 | 85..703 | 100 | <- | Minus |
arm_X | 20300530..20300601 | 13..84 | 98 | | Minus |
BO14236.complete Sequence
1342 bp assembled on 2006-10-11
GenBank Submission: FJ633051
> BO14236.complete
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAGAGTTGCCGGAGGAACCGACCATC
TCCAAAGAGTACGAGCAGCAGGTGATCAGCGAACTAGCAGCCGTTTCTAA
AGCCTCGGGTGTTGGATCCAACTGGAGTGCATCCTCGGTCACCGGCCACT
CCGCCTTGACACTGGCACCACATTTGAACATGACCAAGCCGCCGGTCTAC
AAGCCCAGTAAGGAATCCAAGAGTTGGCCAGCTCCTGCAGCAGGCAGCGA
TTGGCTGGAGAGGACCTACAATCGGGTGCAGGACAAGGAGCTGCTGGAAA
TGCAGGACATGCGCCAGTGTCTGTCGATGCATCAGCCCTGGGCTTCGCTT
CTAGTGGCGGGCATTAAGAAACACGAGGGTCGAGTGTGGTACAGCGAGCA
CCGTGGTAGACTGTGGATCGCCTCCACTTCCAAGGAGCCGCACGCCGAAG
ACATTGCGCAAATGGAGGGCTTTTACAAGATCCCGACATTAAGTTTCCAA
GTCATTATCCCACAAGCAGTCTGCGCAAGCTTTCTAGACCAT
BO14236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1311 | CG11710-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG11710-RC | 1542 | CG11710-PC | 1..1321 | 17..1324 | 6375 | 99 | Plus |
CG11710-RB | 1542 | CG11710-PB | 1..1321 | 17..1324 | 6375 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1766 | CG11710-RA | 100..1411 | 13..1324 | 6545 | 99.9 | Plus |
CG11710-RC | 1903 | CG11710-RC | 100..1424 | 13..1324 | 6380 | 98.9 | Plus |
CG11710-RB | 1779 | CG11710-RB | 100..1424 | 13..1324 | 6380 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428818..20429437 | 704..85 | 3100 | 100 | Minus |
X | 23542271 | X | 20428233..20428705 | 1170..698 | 2350 | 99.8 | Minus |
X | 23542271 | X | 20428064..20428172 | 1279..1171 | 545 | 100 | Minus |
X | 23542271 | X | 20429502..20429574 | 85..13 | 350 | 98.6 | Minus |
X | 23542271 | X | 20427950..20427996 | 1324..1278 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:44 has no hits.
BO14236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:59 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 1..1311 | 17..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:10 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 26..1343 | 13..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:18 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 104..1411 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:59 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 26..1343 | 13..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:03 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 104..1411 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:03 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20427948..20427994 | 1280..1326 | 95 | <- | Minus |
X | 20428064..20428172 | 1171..1279 | 100 | <- | Minus |
X | 20428233..20428699 | 704..1170 | 100 | <- | Minus |
X | 20428819..20429437 | 85..703 | 100 | <- | Minus |
X | 20429503..20429570 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:18 Download gff for
BO14236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20298975..20299021 | 1280..1326 | 95 | <- | Minus |
arm_X | 20299091..20299199 | 1171..1279 | 100 | <- | Minus |
arm_X | 20299260..20299726 | 704..1170 | 100 | <- | Minus |
arm_X | 20299846..20300464 | 85..703 | 100 | <- | Minus |
arm_X | 20300530..20300597 | 17..84 | 100 | | Minus |
BO14236.pep Sequence
Translation from 16 to 1342
> BO14236.pep
MENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNLLSEDNEEHR
MFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISKGAKGKSGKH
VNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGRIVCEQEGSG
PCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKELSTQALDKA
LAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAEREKFEKLHREM
EEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELAAVSKASGVG
SNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPAAGSDWLERT
YNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLW
IASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVCASFLDH
BO14236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PA | 436 | CG11710-PA | 1..436 | 1..436 | 2308 | 100 | Plus |
CG11710-PC | 513 | CG11710-PC | 1..422 | 1..422 | 2235 | 99.8 | Plus |
CG11710-PB | 513 | CG11710-PB | 1..422 | 1..422 | 2235 | 99.8 | Plus |