Clone Sequence Records
BO14239.3prime Sequence
792 bp (753 high quality bases) assembled on 2006-05-29
> BO14239.3prime
ATGGTCTAGAAAGCTTGCTGTGCTACTCATTGATCCCTGCGAGCTATTCG
ATGTGATGGTGCTGACGGGACTTCGTTTCCGGGACTTTCGCTTGTTCCCA
TCCGACTGCCGGATCCGCTGTAATGCCAGATCGTAGTTATTAACGTTGAT
GCAGATGGCTATATAGGCCACCAGCTTGGGCGCCTGCAGTTCGCTGGCCA
ACTGACTCGCCTTCGCCAGCGATTCCTTTAGCCTCTCGAAGCGATTGAGC
ACGGCATGCACCTGGCAGCCCAGGAAGATGCTGTTGAATCGCCAGATCAG
ACAATTGCAACTGCGGGCCTCGTTAAAGGCCTTGCGGGCCACCACGAGGC
ACTTGTCGAAACGCGACTCCTGGAAGTGACAGCGCGCGATCTCAAACAAC
AAATAGGATCGCTCGATCGCAAAGCGGGAGTGACGCAGCCGATTCTCCAG
TTGCTCTAGCTTCTGGCTAATTCGGCTGTGCCGCTCATCCTCCTTCTCGA
TCTCCACATAGATGTTGGGACCCCCGAACTGTACGCTCATGTCGTGCAGC
TTCTCCGTCCGCAGTAGGTATAAGATGGGTCGATTCTGGGCCTGCAGGAA
GTCGACATTGGCTGGCACCGCGCACTTGTCGCAATAGGCCAGTGCCAGGA
TATTGTAGACTTCGTTGATGAACTCAAACTTCCAGGGCAGCGTGCGATGG
GTTTTATACTCTATGAATCCCGACATTATGTTCTCCACGTAATCGGACAG
CTTCTCCACATCGCCCTCCCGGCGCCGCTTGTGCACCTCGTG
BO14239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12993-PA | 1617 | CG12993-RA | 841..1614 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p-cup-RA | 1875 | CG12993-RA | 914..1687 | 792..19 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17447150..17447475 | 467..792 | 1630 | 100 | Plus |
X | 23542271 | X | 17446538..17446840 | 19..321 | 1515 | 100 | Plus |
X | 23542271 | X | 17446910..17447057 | 321..468 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:44:01 has no hits.
BO14239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:57 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-PA | 841..1617 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:25 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-PA | 841..1617 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:36 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 914..1687 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:16 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 914..1687 | 19..792 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:16 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17446910..17447055 | 321..466 | 100 | <- | Plus |
X | 17446538..17446839 | 19..320 | 100 | <- | Plus |
X | 17447150..17447475 | 467..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:36 Download gff for
BO14239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17340571..17340872 | 19..320 | 100 | <- | Plus |
arm_X | 17340943..17341088 | 321..466 | 100 | <- | Plus |
arm_X | 17341183..17341508 | 467..792 | 100 | | Plus |
BO14239.5prime Sequence
892 bp (819 high quality bases) assembled on 2006-05-29
> BO14239.5prime
GAAGTTATCAGTCGACATGTCATGGACGAGTGGCCTGTACAAGTCCTTGC
TCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCTCCTGGAC
ATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATCGAAGGGA
ATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAGAAGTGCG
AAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCACGCTTTAT
ACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGTTCGAGAT
GATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGCGAATCCC
TGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAATCAACCGA
CGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGAAGAAGCT
GCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAGGAGCGGC
CGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGAGAGTCTG
TACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGCTGCTGCG
TCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTTGCCACCA
CGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGTGCGGCGG
CTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGCGGTACGT
GCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGGTGGCAGG
AGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTGCATGCGG
ATGCTGCACGAGGTGCACAAGCGGGCGCCGGGAGGGCGATGT
BO14239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12993-PA | 1617 | CG12993-RA | 1..858 | 17..874 | 4140 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p-cup-RA | 1875 | CG12993-RA | 72..948 | 15..892 | 4275 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17447927..17448320 | 706..313 | 1925 | 99.2 | Minus |
X | 23542271 | X | 17448405..17448703 | 313..15 | 1465 | 99.3 | Minus |
X | 23542271 | X | 17447441..17447626 | 892..706 | 870 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:02:28 has no hits.
BO14239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:58 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-PA | 1..875 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:26 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-PA | 1..875 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:28 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 69..948 | 12..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:19 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 69..948 | 12..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:19 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17447441..17447625 | 707..892 | 98 | <- | Minus |
X | 17447927..17448319 | 314..706 | 99 | <- | Minus |
X | 17448405..17448706 | 12..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:28 Download gff for
BO14239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17341474..17341658 | 707..892 | 98 | <- | Minus |
arm_X | 17341960..17342352 | 314..706 | 99 | <- | Minus |
arm_X | 17342438..17342739 | 12..313 | 99 | | Minus |
BO14239.complete Sequence
1648 bp assembled on 2007-06-22
GenBank Submission: FJ633052
> BO14239.complete
GAAGTTATCAGTCGACATGTCATGGACGAGTGGCCTGTACAAGTCCTTGC
TCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCTCCTGGAC
ATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATCGAAGGGA
ATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAGAAGTGCG
AAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCACGCTTTAT
ACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGTTCGAGAT
GATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGCGAATCCC
TGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAATCAACCGA
CGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGAAGAAGCT
GCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAGGAGCGGC
CGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGAGAGTCTG
TACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGCTGCTGCG
TCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTTGCCACCA
CGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGTGCGGCGG
CTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGCGGTACGT
GCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGGTGGCAGG
AGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTGCATGCGG
ATGCTGCACGAGGTGCACAAGCGGCGCCGGGAGGGCGATGTGGAGAAGCT
GTCCGATTACGTGGAGAACATAATGTCGGGATTCATAGAGTATAAAACCC
ATCGCACGCTGCCCTGGAAGTTTGAGTTCATCAACGAAGTCTACAATATC
CTGGCACTGGCCTATTGCGACAAGTGCGCGGTGCCAGCCAATGTCGACTT
CCTGCAGGCCCAGAATCGACCCATCTTATACCTACTGCGGACGGAGAAGC
TGCACGACATGAGCGTACAGTTCGGGGGTCCCAACATCTATGTGGAGATC
GAGAAGGAGGATGAGCGGCACAGCCGAATTAGCCAGAAGCTAGAGCAACT
GGAGAATCGGCTGCGTCACTCCCGCTTTGCGATCGAGCGATCCTATTTGT
TGTTTGAGATCGCGCGCTGTCACTTCCAGGAGTCGCGTTTCGACAAGTGC
CTCGTGGTGGCCCGCAAGGCCTTTAACGAGGCCCGCAGTTGCAATTGTCT
GATCTGGCGATTCAACAGCATCTTCCTGGGCTGCCAGGTGCATGCCGTGC
TCAATCGCTTCGAGAGGCTAAAGGAATCGCTGGCGAAGGCGAGTCAGTTG
GCCAGCGAACTGCAGGCGCCCAAGCTGGTGGCCTATATAGCCATCTGCAT
CAACGTTAATAACTACGATCTGGCATTACAGCGGATCCGGCAGTCGGATG
GGAACAAGCGAAAGTCCCGGAAACGAAGTCCCGTCAGCACCATCACATCG
AATAGCTCGCAGGGATCAATGAGTAGCACAGCAAGCTTTCTAGACCAT
BO14239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p-cup-RA | 1617 | CG12993-PA | 1..1614 | 17..1630 | 7980 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p-cup-RA | 1875 | CG12993-RA | 72..1687 | 15..1630 | 7990 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17447150..17447626 | 1182..706 | 2370 | 99.8 | Minus |
X | 23542271 | X | 17447927..17448320 | 706..313 | 1925 | 99.2 | Minus |
X | 23542271 | X | 17446538..17446840 | 1630..1328 | 1515 | 100 | Minus |
X | 23542271 | X | 17448405..17448703 | 313..15 | 1465 | 99.3 | Minus |
X | 23542271 | X | 17446910..17447057 | 1328..1181 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:29:21 has no hits.
BO14239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:09 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-RA | 1..1617 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:41 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-RA | 69..1687 | 12..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:11 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 74..1687 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:09 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12993-RA | 69..1687 | 12..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:04 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p-cup-RA | 74..1687 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:04 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17446536..17446839 | 1329..1632 | 99 | <- | Minus |
X | 17446910..17447055 | 1183..1328 | 100 | <- | Minus |
X | 17447150..17447625 | 707..1182 | 99 | <- | Minus |
X | 17447927..17448319 | 314..706 | 99 | <- | Minus |
X | 17448405..17448701 | 17..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:11 Download gff for
BO14239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17340569..17340872 | 1329..1632 | 99 | <- | Minus |
arm_X | 17340943..17341088 | 1183..1328 | 100 | <- | Minus |
arm_X | 17341183..17341658 | 707..1182 | 99 | <- | Minus |
arm_X | 17341960..17342352 | 314..706 | 99 | <- | Minus |
arm_X | 17342438..17342734 | 17..313 | 99 | | Minus |
BO14239.pep Sequence
Translation from 16 to 1648
> BO14239.pep
MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH
SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS
LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ
CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD
RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG
PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE
NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN
RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR
HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN
SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY
DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSSTASFLDH
BO14239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p-cup-PA | 538 | CG12993-PA | 1..538 | 1..538 | 2785 | 100 | Plus |
CG7634-PA | 579 | CG7634-PA | 77..578 | 14..531 | 659 | 30.9 | Plus |
r-cup-PA | 594 | CG10998-PA | 91..574 | 44..529 | 623 | 32.4 | Plus |
CG15128-PA | 580 | CG15128-PA | 110..573 | 61..532 | 617 | 31.4 | Plus |
wa-cup-PB | 580 | CG10113-PB | 117..560 | 61..518 | 573 | 32 | Plus |