Clone BO14239 Report

Search the DGRC for BO14239

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptp-cup-RA
Protein status:BO14239.pep: validated full length
Sequenced Size:1648

Clone Sequence Records

BO14239.3prime Sequence

792 bp (753 high quality bases) assembled on 2006-05-29

> BO14239.3prime
ATGGTCTAGAAAGCTTGCTGTGCTACTCATTGATCCCTGCGAGCTATTCG
ATGTGATGGTGCTGACGGGACTTCGTTTCCGGGACTTTCGCTTGTTCCCA
TCCGACTGCCGGATCCGCTGTAATGCCAGATCGTAGTTATTAACGTTGAT
GCAGATGGCTATATAGGCCACCAGCTTGGGCGCCTGCAGTTCGCTGGCCA
ACTGACTCGCCTTCGCCAGCGATTCCTTTAGCCTCTCGAAGCGATTGAGC
ACGGCATGCACCTGGCAGCCCAGGAAGATGCTGTTGAATCGCCAGATCAG
ACAATTGCAACTGCGGGCCTCGTTAAAGGCCTTGCGGGCCACCACGAGGC
ACTTGTCGAAACGCGACTCCTGGAAGTGACAGCGCGCGATCTCAAACAAC
AAATAGGATCGCTCGATCGCAAAGCGGGAGTGACGCAGCCGATTCTCCAG
TTGCTCTAGCTTCTGGCTAATTCGGCTGTGCCGCTCATCCTCCTTCTCGA
TCTCCACATAGATGTTGGGACCCCCGAACTGTACGCTCATGTCGTGCAGC
TTCTCCGTCCGCAGTAGGTATAAGATGGGTCGATTCTGGGCCTGCAGGAA
GTCGACATTGGCTGGCACCGCGCACTTGTCGCAATAGGCCAGTGCCAGGA
TATTGTAGACTTCGTTGATGAACTCAAACTTCCAGGGCAGCGTGCGATGG
GTTTTATACTCTATGAATCCCGACATTATGTTCTCCACGTAATCGGACAG
CTTCTCCACATCGCCCTCCCGGCGCCGCTTGTGCACCTCGTG

BO14239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12993-PA 1617 CG12993-RA 841..1614 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-RA 1875 CG12993-RA 914..1687 792..19 3870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17447150..17447475 467..792 1630 100 Plus
X 23542271 X 17446538..17446840 19..321 1515 100 Plus
X 23542271 X 17446910..17447057 321..468 740 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:44:01 has no hits.

BO14239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:57 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12993-PA 841..1617 18..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:25 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12993-PA 841..1617 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:36 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 914..1687 19..792 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:16 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 914..1687 19..792 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:16 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17446910..17447055 321..466 100 <- Plus
X 17446538..17446839 19..320 100 <- Plus
X 17447150..17447475 467..792 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:36 Download gff for BO14239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17340571..17340872 19..320 100 <- Plus
arm_X 17340943..17341088 321..466 100 <- Plus
arm_X 17341183..17341508 467..792 100   Plus

BO14239.5prime Sequence

892 bp (819 high quality bases) assembled on 2006-05-29

> BO14239.5prime
GAAGTTATCAGTCGACATGTCATGGACGAGTGGCCTGTACAAGTCCTTGC
TCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCTCCTGGAC
ATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATCGAAGGGA
ATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAGAAGTGCG
AAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCACGCTTTAT
ACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGTTCGAGAT
GATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGCGAATCCC
TGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAATCAACCGA
CGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGAAGAAGCT
GCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAGGAGCGGC
CGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGAGAGTCTG
TACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGCTGCTGCG
TCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTTGCCACCA
CGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGTGCGGCGG
CTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGCGGTACGT
GCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGGTGGCAGG
AGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTGCATGCGG
ATGCTGCACGAGGTGCACAAGCGGGCGCCGGGAGGGCGATGT

BO14239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12993-PA 1617 CG12993-RA 1..858 17..874 4140 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-RA 1875 CG12993-RA 72..948 15..892 4275 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17447927..17448320 706..313 1925 99.2 Minus
X 23542271 X 17448405..17448703 313..15 1465 99.3 Minus
X 23542271 X 17447441..17447626 892..706 870 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:02:28 has no hits.

BO14239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:58 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12993-PA 1..875 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:26 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12993-PA 1..875 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:28 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 69..948 12..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:19 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 69..948 12..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:19 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17447441..17447625 707..892 98 <- Minus
X 17447927..17448319 314..706 99 <- Minus
X 17448405..17448706 12..313 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:28 Download gff for BO14239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17341474..17341658 707..892 98 <- Minus
arm_X 17341960..17342352 314..706 99 <- Minus
arm_X 17342438..17342739 12..313 99   Minus

BO14239.complete Sequence

1648 bp assembled on 2007-06-22

GenBank Submission: FJ633052

> BO14239.complete
GAAGTTATCAGTCGACATGTCATGGACGAGTGGCCTGTACAAGTCCTTGC
TCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCTCCTGGAC
ATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATCGAAGGGA
ATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAGAAGTGCG
AAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCACGCTTTAT
ACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGTTCGAGAT
GATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGCGAATCCC
TGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAATCAACCGA
CGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGAAGAAGCT
GCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAGGAGCGGC
CGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGAGAGTCTG
TACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGCTGCTGCG
TCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTTGCCACCA
CGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGTGCGGCGG
CTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGCGGTACGT
GCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGGTGGCAGG
AGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTGCATGCGG
ATGCTGCACGAGGTGCACAAGCGGCGCCGGGAGGGCGATGTGGAGAAGCT
GTCCGATTACGTGGAGAACATAATGTCGGGATTCATAGAGTATAAAACCC
ATCGCACGCTGCCCTGGAAGTTTGAGTTCATCAACGAAGTCTACAATATC
CTGGCACTGGCCTATTGCGACAAGTGCGCGGTGCCAGCCAATGTCGACTT
CCTGCAGGCCCAGAATCGACCCATCTTATACCTACTGCGGACGGAGAAGC
TGCACGACATGAGCGTACAGTTCGGGGGTCCCAACATCTATGTGGAGATC
GAGAAGGAGGATGAGCGGCACAGCCGAATTAGCCAGAAGCTAGAGCAACT
GGAGAATCGGCTGCGTCACTCCCGCTTTGCGATCGAGCGATCCTATTTGT
TGTTTGAGATCGCGCGCTGTCACTTCCAGGAGTCGCGTTTCGACAAGTGC
CTCGTGGTGGCCCGCAAGGCCTTTAACGAGGCCCGCAGTTGCAATTGTCT
GATCTGGCGATTCAACAGCATCTTCCTGGGCTGCCAGGTGCATGCCGTGC
TCAATCGCTTCGAGAGGCTAAAGGAATCGCTGGCGAAGGCGAGTCAGTTG
GCCAGCGAACTGCAGGCGCCCAAGCTGGTGGCCTATATAGCCATCTGCAT
CAACGTTAATAACTACGATCTGGCATTACAGCGGATCCGGCAGTCGGATG
GGAACAAGCGAAAGTCCCGGAAACGAAGTCCCGTCAGCACCATCACATCG
AATAGCTCGCAGGGATCAATGAGTAGCACAGCAAGCTTTCTAGACCAT

BO14239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-RA 1617 CG12993-PA 1..1614 17..1630 7980 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-RA 1875 CG12993-RA 72..1687 15..1630 7990 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17447150..17447626 1182..706 2370 99.8 Minus
X 23542271 X 17447927..17448320 706..313 1925 99.2 Minus
X 23542271 X 17446538..17446840 1630..1328 1515 100 Minus
X 23542271 X 17448405..17448703 313..15 1465 99.3 Minus
X 23542271 X 17446910..17447057 1328..1181 740 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:29:21 has no hits.

BO14239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:09 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 1..1617 17..1631 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:41 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 69..1687 12..1630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:11 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 74..1687 17..1632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:09 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 69..1687 12..1630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:04 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 74..1687 17..1632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:04 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
X 17446536..17446839 1329..1632 99 <- Minus
X 17446910..17447055 1183..1328 100 <- Minus
X 17447150..17447625 707..1182 99 <- Minus
X 17447927..17448319 314..706 99 <- Minus
X 17448405..17448701 17..313 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:11 Download gff for BO14239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17340569..17340872 1329..1632 99 <- Minus
arm_X 17340943..17341088 1183..1328 100 <- Minus
arm_X 17341183..17341658 707..1182 99 <- Minus
arm_X 17341960..17342352 314..706 99 <- Minus
arm_X 17342438..17342734 17..313 99   Minus

BO14239.pep Sequence

Translation from 16 to 1648

> BO14239.pep
MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH
SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS
LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ
CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD
RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG
PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE
NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN
RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR
HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN
SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY
DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSSTASFLDH

BO14239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-PA 538 CG12993-PA 1..538 1..538 2785 100 Plus
CG7634-PA 579 CG7634-PA 77..578 14..531 659 30.9 Plus
r-cup-PA 594 CG10998-PA 91..574 44..529 623 32.4 Plus
CG15128-PA 580 CG15128-PA 110..573 61..532 617 31.4 Plus
wa-cup-PB 580 CG10113-PB 117..560 61..518 573 32 Plus