Clone Sequence Records
BO14240.3prime Sequence
757 bp (709 high quality bases) assembled on 2006-05-29
> BO14240.3prime
ATGGTCTAGAAAGCTTGCGAGCATGTCCCGATCCACCATATCAATGACTA
TTTCCGACATCTTCTGGCGGCACAGGTCGTTGGGTGGAAAGTTAAGCGTT
GGCGCGCCCACATCCTCCCCGAGTTCATCGCTTCGATCCAAATACATATC
GGGAGCATCCTCCGAAGAGCAGGTGCTAATAGGCAGGATATCCAATGCCA
AACCAAGTGCAAAGCGTCCGTATGTCTTCAGCTCCTCGGCAAAAAGATCC
TGCAGCTTCTGTAACGTGTCGCAGTGGTCCGGCAAATTTGTGCAGAGCAT
TTGCAGCCATCGAAACAGCTCCTCCGTATAGATCTTGAGCAGAGTCTGCA
GCTGAGCATCGCGCATTTCCTTGGTGGTGCAGCAGTACAGCAGATTGGCA
ATGTCCAGTGCGATCGAGCTGTAGCGTATCAGCTGAAAGTCGAGCAGCGC
CACCTCAAGCACTCGGTGTGGATCCTCCGGATCATAGTGGTACAGAAAGT
TGTTCACCCAACAGTCGCCGTGGCAAATGGCCGATAACGGCGACTCGGTA
CTGGCCAACTTCACCATCCGGCCGAAGAATGAGGAGCTTTCTGCGAATTT
GTTCATTGCCAGGACATACTTGGAGTCGGGGGGCAGCACCTCGGACACCA
TCTGAATGGCGTTCTTGGTAAGGCGCTCGTAGTAGTTTCGATACCAACTC
GTATTGGCCGTGCAGAATATGCCCTCGCTGATCATGCTGCACAGATTGCT
AAACTCC
BO14240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-PA | 1317 | CG14314-RA | 576..1314 | 757..19 | 3545 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-RA | 1606 | CG14314-RA | 731..1469 | 757..19 | 3605 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18217080..18217592 | 757..245 | 2505 | 99.2 | Minus |
3R | 32079331 | 3R | 18217652..18217877 | 244..19 | 1100 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:41:16 has no hits.
BO14240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:59 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-PA | 576..1317 | 18..757 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:27 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-PA | 576..1317 | 18..757 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:06 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 731..1474 | 13..757 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:52 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 731..1474 | 13..757 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:52 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18217652..18217886 | 13..244 | 97 | <- | Minus |
3R | 18217080..18217592 | 245..757 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:06 Download gff for
BO14240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14042802..14043314 | 245..757 | 99 | -> | Minus |
arm_3R | 14043374..14043608 | 13..244 | 97 | <- | Minus |
BO14240.5prime Sequence
941 bp (755 high quality bases) assembled on 2006-05-29
> BO14240.5prime
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCCATTCAGATG
GTGTCCGAGGTGCTGCCCCCCGACTCCAAGTATGTCCTGGCAATGAACAA
ATTCGCAGAAAGCTCCTCATTCTTCGGCCGGATGGTGAAGTTGGCCAGTA
CCGAGTCGCCGTTATCGGCCATTTGCCACGGCGACTGTTGGGTGAACAAC
TTTCTGTACCACTATGATCCGGAGGATCCACACCGAGTGCTTGAGGTGGC
GCTGCTCGACTTTCAGCTGATACGCTACAGCTCGATCGCAC
BO14240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-PA | 1317 | CG14314-RA | 1..925 | 17..941 | 4375 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-RA | 1606 | CG14314-RA | 156..1080 | 17..941 | 4475 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18216946..18217429 | 458..941 | 2360 | 99.2 | Plus |
3R | 32079331 | 3R | 18216525..18216690 | 159..324 | 785 | 98.2 | Plus |
3R | 32079331 | 3R | 18216297..18216440 | 17..160 | 690 | 98.6 | Plus |
3R | 32079331 | 3R | 18216750..18216884 | 324..458 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:43:51 has no hits.
BO14240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:00 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-PA | 1..925 | 17..941 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:29 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-PA | 1..925 | 17..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:39 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 156..1080 | 17..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:16 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 156..1080 | 17..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:16 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18216297..18216440 | 17..160 | 98 | -> | Plus |
3R | 18216527..18216690 | 161..324 | 98 | -> | Plus |
3R | 18216751..18216884 | 325..458 | 99 | -> | Plus |
3R | 18216947..18217429 | 459..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:39 Download gff for
BO14240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14042019..14042162 | 17..160 | 98 | -> | Plus |
arm_3R | 14042249..14042412 | 161..324 | 98 | -> | Plus |
arm_3R | 14042473..14042606 | 325..458 | 99 | -> | Plus |
arm_3R | 14042669..14043151 | 459..941 | 99 | | Plus |
BO14240.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ633053
> BO14240.complete
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCCATTCAGATG
GTGTCCGAGGTGCTGCCCCCCGACTCCAAGTATGTCCTGGCAATGAACAA
ATTCGCAGAAAGCTCCTCATTCTTCGGCCGGATGGTGAAGTTGGCCAGTA
CCGAGTCGCCGTTATCGGCCATTTGCCACGGCGACTGTTGGGTGAACAAC
TTTCTGTACCACTATGATCCGGAGGATCCACACCGAGTGCTTGAGGTGGC
GCTGCTCGACTTTCAGCTGATACGCTACAGCTCGATCGCACTGGACATTG
CCAATCTGCTGTACTGCTGCACCACCAAGGAAATGCGCGATGCTCAGCTG
CAGACTCTGCTCAAGATCTATACGGAGGAGCTGTTTCGATGGCTGCAAAT
GCTCTGCACAAATTTGCCGGACCACTGCGACACGTTACAGAAGCTGCAGG
ATCTTTTTGCCGAGGAGCTGAAGACATACGGACGCTTTGCACTTGGTTTG
GCATTGGATATCCTGCCTATTAGCACCTGCTCTTCGGAGGATGCTCCCGA
TATGTATTTGGATCGAAGCGATGAACTCGGGGAGGATGTGGGCGCGCCAA
CGCTTAACTTTCCACCCAACGACCTGTGCCGCCAGAAGATGTCGGAAATA
GTCATTGATATGGTGGATCGGGACATGCTCGCAAGCTTTCTAGACCAT
BO14240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-RA | 1317 | CG14314-PA | 1..1314 | 17..1330 | 6390 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-RA | 1606 | CG14314-RA | 156..1469 | 17..1330 | 6390 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18216946..18217592 | 458..1104 | 3175 | 99.4 | Plus |
3R | 32079331 | 3R | 18217652..18217877 | 1105..1330 | 1100 | 99.1 | Plus |
3R | 32079331 | 3R | 18216525..18216690 | 159..324 | 785 | 98.2 | Plus |
3R | 32079331 | 3R | 18216297..18216440 | 17..160 | 690 | 98.6 | Plus |
3R | 32079331 | 3R | 18216750..18216884 | 324..458 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:34 has no hits.
BO14240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:05 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 1..1317 | 17..1331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:15 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 164..1482 | 17..1336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:22 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 156..1469 | 17..1332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:05 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 164..1482 | 17..1336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:29 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14314-RA | 156..1469 | 17..1332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:29 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18216297..18216440 | 17..160 | 98 | -> | Plus |
3R | 18216527..18216690 | 161..324 | 98 | -> | Plus |
3R | 18216751..18216884 | 325..458 | 99 | -> | Plus |
3R | 18216947..18217592 | 459..1104 | 99 | -> | Plus |
3R | 18217652..18217877 | 1105..1332 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:22 Download gff for
BO14240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14042019..14042162 | 17..160 | 98 | -> | Plus |
arm_3R | 14042249..14042412 | 161..324 | 98 | -> | Plus |
arm_3R | 14042473..14042606 | 325..458 | 99 | -> | Plus |
arm_3R | 14042669..14043314 | 459..1104 | 99 | -> | Plus |
arm_3R | 14043374..14043599 | 1105..1332 | 98 | | Plus |
BO14240.pep Sequence
Translation from 16 to 1348
> BO14240.pep
MGITETAATTTTGLGAANAVESKQILSLEVFQDIFKHVEPDVQIDAFELA
QGSDRGDNYTAALYRIKLTGKRRSLKWEQNVICKVMPESVVAREAYKSDK
LFRNEVQFYNTIMPELLKFQASKTNQDTPVFNAIPKCYSARHDLLIMEDL
RERGFQMSDRHKGLSLEETQSVLLQVAQLHGLSLAYKFEKPLEFSNLCSM
ISEGIFCTANTSWYRNYYERLTKNAIQMVSEVLPPDSKYVLAMNKFAESS
SFFGRMVKLASTESPLSAICHGDCWVNNFLYHYDPEDPHRVLEVALLDFQ
LIRYSSIALDIANLLYCCTTKEMRDAQLQTLLKIYTEELFRWLQMLCTNL
PDHCDTLQKLQDLFAEELKTYGRFALGLALDILPISTCSSEDAPDMYLDR
SDELGEDVGAPTLNFPPNDLCRQKMSEIVIDMVDRDMLASFLDH
BO14240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14314-PA | 438 | CG14314-PA | 1..438 | 1..438 | 2278 | 100 | Plus |
CG2004-PG | 425 | CG2004-PG | 33..384 | 46..396 | 434 | 28.3 | Plus |
CG2004-PF | 425 | CG2004-PF | 33..384 | 46..396 | 434 | 28.3 | Plus |
CG2004-PD | 425 | CG2004-PD | 33..384 | 46..396 | 434 | 28.3 | Plus |
CG2004-PC | 425 | CG2004-PC | 33..384 | 46..396 | 434 | 28.3 | Plus |