Clone BO14240 Report

Search the DGRC for BO14240

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG14314-RA
Protein status:BO14240.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO14240.3prime Sequence

757 bp (709 high quality bases) assembled on 2006-05-29

> BO14240.3prime
ATGGTCTAGAAAGCTTGCGAGCATGTCCCGATCCACCATATCAATGACTA
TTTCCGACATCTTCTGGCGGCACAGGTCGTTGGGTGGAAAGTTAAGCGTT
GGCGCGCCCACATCCTCCCCGAGTTCATCGCTTCGATCCAAATACATATC
GGGAGCATCCTCCGAAGAGCAGGTGCTAATAGGCAGGATATCCAATGCCA
AACCAAGTGCAAAGCGTCCGTATGTCTTCAGCTCCTCGGCAAAAAGATCC
TGCAGCTTCTGTAACGTGTCGCAGTGGTCCGGCAAATTTGTGCAGAGCAT
TTGCAGCCATCGAAACAGCTCCTCCGTATAGATCTTGAGCAGAGTCTGCA
GCTGAGCATCGCGCATTTCCTTGGTGGTGCAGCAGTACAGCAGATTGGCA
ATGTCCAGTGCGATCGAGCTGTAGCGTATCAGCTGAAAGTCGAGCAGCGC
CACCTCAAGCACTCGGTGTGGATCCTCCGGATCATAGTGGTACAGAAAGT
TGTTCACCCAACAGTCGCCGTGGCAAATGGCCGATAACGGCGACTCGGTA
CTGGCCAACTTCACCATCCGGCCGAAGAATGAGGAGCTTTCTGCGAATTT
GTTCATTGCCAGGACATACTTGGAGTCGGGGGGCAGCACCTCGGACACCA
TCTGAATGGCGTTCTTGGTAAGGCGCTCGTAGTAGTTTCGATACCAACTC
GTATTGGCCGTGCAGAATATGCCCTCGCTGATCATGCTGCACAGATTGCT
AAACTCC

BO14240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-PA 1317 CG14314-RA 576..1314 757..19 3545 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-RA 1606 CG14314-RA 731..1469 757..19 3605 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18217080..18217592 757..245 2505 99.2 Minus
3R 32079331 3R 18217652..18217877 244..19 1100 99.1 Minus
Blast to na_te.dros performed on 2015-02-06 11:41:16 has no hits.

BO14240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:21:59 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-PA 576..1317 18..757 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:27 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-PA 576..1317 18..757 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:06 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 731..1474 13..757 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:52 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 731..1474 13..757 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:52 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18217652..18217886 13..244 97 <- Minus
3R 18217080..18217592 245..757 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:06 Download gff for BO14240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14042802..14043314 245..757 99 -> Minus
arm_3R 14043374..14043608 13..244 97 <- Minus

BO14240.5prime Sequence

941 bp (755 high quality bases) assembled on 2006-05-29

> BO14240.5prime
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCCATTCAGATG
GTGTCCGAGGTGCTGCCCCCCGACTCCAAGTATGTCCTGGCAATGAACAA
ATTCGCAGAAAGCTCCTCATTCTTCGGCCGGATGGTGAAGTTGGCCAGTA
CCGAGTCGCCGTTATCGGCCATTTGCCACGGCGACTGTTGGGTGAACAAC
TTTCTGTACCACTATGATCCGGAGGATCCACACCGAGTGCTTGAGGTGGC
GCTGCTCGACTTTCAGCTGATACGCTACAGCTCGATCGCAC

BO14240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-PA 1317 CG14314-RA 1..925 17..941 4375 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-RA 1606 CG14314-RA 156..1080 17..941 4475 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18216946..18217429 458..941 2360 99.2 Plus
3R 32079331 3R 18216525..18216690 159..324 785 98.2 Plus
3R 32079331 3R 18216297..18216440 17..160 690 98.6 Plus
3R 32079331 3R 18216750..18216884 324..458 660 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 09:43:51 has no hits.

BO14240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:00 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-PA 1..925 17..941 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:29 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-PA 1..925 17..941 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:39 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 156..1080 17..941 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:16 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 156..1080 17..941 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:16 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18216297..18216440 17..160 98 -> Plus
3R 18216527..18216690 161..324 98 -> Plus
3R 18216751..18216884 325..458 99 -> Plus
3R 18216947..18217429 459..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:39 Download gff for BO14240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14042019..14042162 17..160 98 -> Plus
arm_3R 14042249..14042412 161..324 98 -> Plus
arm_3R 14042473..14042606 325..458 99 -> Plus
arm_3R 14042669..14043151 459..941 99   Plus

BO14240.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ633053

> BO14240.complete
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCCATTCAGATG
GTGTCCGAGGTGCTGCCCCCCGACTCCAAGTATGTCCTGGCAATGAACAA
ATTCGCAGAAAGCTCCTCATTCTTCGGCCGGATGGTGAAGTTGGCCAGTA
CCGAGTCGCCGTTATCGGCCATTTGCCACGGCGACTGTTGGGTGAACAAC
TTTCTGTACCACTATGATCCGGAGGATCCACACCGAGTGCTTGAGGTGGC
GCTGCTCGACTTTCAGCTGATACGCTACAGCTCGATCGCACTGGACATTG
CCAATCTGCTGTACTGCTGCACCACCAAGGAAATGCGCGATGCTCAGCTG
CAGACTCTGCTCAAGATCTATACGGAGGAGCTGTTTCGATGGCTGCAAAT
GCTCTGCACAAATTTGCCGGACCACTGCGACACGTTACAGAAGCTGCAGG
ATCTTTTTGCCGAGGAGCTGAAGACATACGGACGCTTTGCACTTGGTTTG
GCATTGGATATCCTGCCTATTAGCACCTGCTCTTCGGAGGATGCTCCCGA
TATGTATTTGGATCGAAGCGATGAACTCGGGGAGGATGTGGGCGCGCCAA
CGCTTAACTTTCCACCCAACGACCTGTGCCGCCAGAAGATGTCGGAAATA
GTCATTGATATGGTGGATCGGGACATGCTCGCAAGCTTTCTAGACCAT

BO14240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-RA 1317 CG14314-PA 1..1314 17..1330 6390 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-RA 1606 CG14314-RA 156..1469 17..1330 6390 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18216946..18217592 458..1104 3175 99.4 Plus
3R 32079331 3R 18217652..18217877 1105..1330 1100 99.1 Plus
3R 32079331 3R 18216525..18216690 159..324 785 98.2 Plus
3R 32079331 3R 18216297..18216440 17..160 690 98.6 Plus
3R 32079331 3R 18216750..18216884 324..458 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 08:37:34 has no hits.

BO14240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:05 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 1..1317 17..1331 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:15 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 164..1482 17..1336 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:22 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 156..1469 17..1332 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:05 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 164..1482 17..1336 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:29 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14314-RA 156..1469 17..1332 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:29 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18216297..18216440 17..160 98 -> Plus
3R 18216527..18216690 161..324 98 -> Plus
3R 18216751..18216884 325..458 99 -> Plus
3R 18216947..18217592 459..1104 99 -> Plus
3R 18217652..18217877 1105..1332 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:22 Download gff for BO14240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14042019..14042162 17..160 98 -> Plus
arm_3R 14042249..14042412 161..324 98 -> Plus
arm_3R 14042473..14042606 325..458 99 -> Plus
arm_3R 14042669..14043314 459..1104 99 -> Plus
arm_3R 14043374..14043599 1105..1332 98   Plus

BO14240.pep Sequence

Translation from 16 to 1348

> BO14240.pep
MGITETAATTTTGLGAANAVESKQILSLEVFQDIFKHVEPDVQIDAFELA
QGSDRGDNYTAALYRIKLTGKRRSLKWEQNVICKVMPESVVAREAYKSDK
LFRNEVQFYNTIMPELLKFQASKTNQDTPVFNAIPKCYSARHDLLIMEDL
RERGFQMSDRHKGLSLEETQSVLLQVAQLHGLSLAYKFEKPLEFSNLCSM
ISEGIFCTANTSWYRNYYERLTKNAIQMVSEVLPPDSKYVLAMNKFAESS
SFFGRMVKLASTESPLSAICHGDCWVNNFLYHYDPEDPHRVLEVALLDFQ
LIRYSSIALDIANLLYCCTTKEMRDAQLQTLLKIYTEELFRWLQMLCTNL
PDHCDTLQKLQDLFAEELKTYGRFALGLALDILPISTCSSEDAPDMYLDR
SDELGEDVGAPTLNFPPNDLCRQKMSEIVIDMVDRDMLASFLDH

BO14240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14314-PA 438 CG14314-PA 1..438 1..438 2278 100 Plus
CG2004-PG 425 CG2004-PG 33..384 46..396 434 28.3 Plus
CG2004-PF 425 CG2004-PF 33..384 46..396 434 28.3 Plus
CG2004-PD 425 CG2004-PD 33..384 46..396 434 28.3 Plus
CG2004-PC 425 CG2004-PC 33..384 46..396 434 28.3 Plus