Clone Sequence Records
BO14241.complete Sequence
1708 bp assembled on 2008-09-03
GenBank Submission: KX797734
> BO14241.complete
GAAGTTATCAGTCGACATGCTGAGCAGATTGGGCCGGAGTGGTCGGGCCG
GTGTGCGCACCTTTGCCAATGACATTCGCTTTGGAGCCGAGGCGCGCTGC
CTGCTTATGCAGGGCGTGAACGTCCTGGCCAACGCGGTGGCCACCACTCT
GGGCCCGAAGGGCAGGAACGTGCTCATCGAACAGCTGCTGATCTCGCCCC
GGATCACCAAGGATGGCATCACGGTGGCGAATAACGTGCAGCTGGGCAAT
CGTCGGCAGGATATGGGAGTTCAATTGCTGCGCCAGGCCACCAATAATAC
CAATAATAAGGTAGGCGATGGCACCACCACGGCCACTATTCTGGCCCGTG
GAATAGCCTGCCAGGGTATGCATGTGTTGCGCCAGAGCAAGGTGAACGTC
CAACTCCTGCGGGAGGGCATTCTCGAGGGATCGCGCGCTGTGTGCGATGC
TCTAGGTGAGATGTCCCAGTCGGTGGATACTATTGGCCAAGTGGAAGCAG
TGGCCAAGGTGGCACTGAATGGAGACGAACGGCTGGCGGAGCTGATTGGT
GACATCATTTTGGAGCTGGGCGATAGCGGCGTCATCCTGCTGAAGGAATC
CCACAGTCCCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCGCTT
CGGGCTACTATTCGCCATTCTTTGCCAAGCAATCTCATACCCTGGAATTG
GAGAATTGCTTGCTGCTGCTCACTTTGGCTAAGATTGATCAAGTGGAACA
GATACTTCCCGCTCTCGAGCTGGCCAGACTAAAAGAACGACCCCTTCTGA
TCATTGCCAAAAATTTTGGTAGCGATTTGCTTAAGATCTTAGTGCTAAAT
AATCTGCAAGGTCGAGTTCAGGTCTGTGCTGTGAAGGCTCCAAGCTTTGG
GGACGAGCAGTGCGAGGAAATGGAGGATATAGCTTTTGCCACCGGTGGCC
ATCTTCTGGAGGATGCCTCCAGTCTGGCGGATCTCAGCGAGGAGGATCTG
GGTGAGGTGATGGAGGCGGTGGTGGACGCTAAGGAAACGCACCTATTGCA
ACCGATCAATGTGAACGAGGAGCAGGTGCAGTGCCGCATCCAGGACATTC
GTGAGCTGATCGATGAGGCTTTCACCGATGTGGAACTGGATCGCCTGAAA
ACACGACTTGGTCGCTTGCAGGGCCACCTGGCCACCATTTTCGTGGGCGG
TACCAGTGAGCTGGAGGTGAGCGAGCGAAAGGATCGCTTCAACGATGCCC
TTCACGCCGTTCGAGTGGCCATAAGTGATGGTGTGGTTCCCGGAGGAGGA
ACCGCCTATCTACGATGTATTCCAGTTCTGGACGAGTTGCCGCCAACCGA
TATAATGGAGCTCCAGGTTGGCAGGGAGATTGTAAAGGACGCTTTACGAC
TACCATGCTATACAATTGCCCGGAATGCTGGAGTGGACCCCAACGAGGTA
CTACGTCGGGTTTTAAAGGGCAGTGGCAACTACGGATATGATGCCGCCGC
TGGGGAATTCGGCGATCTTGTGGTCCGGGGAATTGTGGATCCCACAAAAG
TGTTGCAATCAGCCATGACGTCTGCCGCAGGAATTGCCTCCCTTTTGGCC
ACCACCGAGGTGCTCATCACTAAACAACCCACCAAACCGAAGATTCCGAA
AAATCAGGTCACCAAGGATCTTGCTAAACTTGTTGGAATGGCAAGCTTTC
TAGACCAT
BO14241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1677 | CG16954-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| Hsp60D-RA | 1677 | CG16954-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 152..1825 | 17..1690 | 8370 | 100 | Plus |
| Hsp60D-RA | 1894 | CG16954-RA | 86..1759 | 17..1690 | 8370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13447673..13449346 | 1690..17 | 8370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:44:15 has no hits.
BO14241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:50 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RB | 140..1825 | 7..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:19 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 86..1759 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:02 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RB | 146..1819 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:57 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 86..1759 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:57 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13447671..13449346 | 17..1692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:19 Download gff for
BO14241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13447671..13449346 | 17..1692 | 99 | | Minus |
BO14241.3prime Sequence
806 bp (750 high quality bases) assembled on 2006-05-29
> BO14241.3prime
ATGGTCTAGAAAGCTTGCCATTCCAACAAGTTTAGCAAGATCCTTGGTGA
CCTGATTTTTCGGAATCTTCGGTTTGGTGGGTTGTTTAGTGATGAGCACC
TCGGTGGTGGCCAAAAGGGAGGCAATTCCTGCGGCAGACGTCATGGCTGA
TTGCAACACTTTTGTGGGATCCACAATTCCCCGGACCACAAGATCGCCGA
ATTCCCCAGCGGCGGCATCATATCCGTAGTTGCCACTGCCCTTTAAAACC
CGACGTAGTACCTCGTTGGGGTCCACTCCAGCATTCCGGGCAATTGTATA
GCATGGTAGTCGTAAAGCGTCCTTTACAATCTCCCTGCCAACCTGGAGCT
CCATTATATCGGTTGGCGGCAACTCGTCCAGAACTGGAATACATCGTAGA
TAGGCGGTTCCTCCTCCGGGAACCACACCATCACTTATGGCCACTCGAAC
GGCGTGAAGGGCATCGTTGAAGCGATCCTTTCGCTCGCTCACCTCCAGCT
CACTGGTACCGCCCACGAAAATGGTGGCCAGGTGGCCCTGCAAGCGACCA
AGTCGTGTTTTCAGGCGATCCAGTTCCACATCGGTGAAAGCCTCATCGAT
CAGCTCACGAATGTCCTGGATGCGGCACTGCACCTGCTCCTCGTTCACAT
TGATCGGTTGCAATAGGTGCGTTTCCTTAGCGTCCACCACCGCCTCCATC
ACCTCACCCAGATCCTCCTCGCTGAAATCCGCCAGACTGGAGGCATCCTC
CAGAAGATGGCCACCGGTGGCAAAAGCTATATCCTCCATTTCCTCGCACT
GCTCGT
BO14241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16954-PA | 1677 | CG16954-RA | 887..1674 | 806..19 | 3915 | 99.8 | Minus |
| CG16954-PB | 1677 | CG16954-RB | 887..1674 | 806..19 | 3915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 1038..1825 | 806..19 | 3925 | 99.9 | Minus |
| Hsp60D-RA | 1894 | CG16954-RA | 972..1759 | 806..19 | 3925 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13447673..13448460 | 19..806 | 3925 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:38:09 has no hits.
BO14241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:02 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16954-PB | 887..1677 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:31 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16954-PB | 887..1677 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:55:53 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 972..1765 | 11..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:33 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 972..1765 | 11..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:33 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13447667..13448460 | 11..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:55:53 Download gff for
BO14241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13447667..13448460 | 11..806 | 99 | | Plus |
BO14241.5prime Sequence
831 bp (726 high quality bases) assembled on 2006-05-29
> BO14241.5prime
GAAGTTATCAGTCGACATGCTGAGCAGATTGGGCCGGAGTGGTCGGGCCG
GTGTGCGCACCTTTGCCAATGACATTCGCTTTGGAGCCGAGGCGCGCTGC
CTGCTTATGCAGGGCGTGAACGTCCTGGCCAACGCGGTGGCCACCACTCT
GGGCCCGAAGGGCAGGAACGTGCTCATCGAACAGCTGCTGATCTCGCCCC
GGATCACCAAGGATGGCATCACGGTGGCGAATAACGTGCAGCTGGGCAAT
CGTCGGCAGGATATGGGAGTTCAATTGCTGCGCCAGGCCACCAATAATAC
CAATAATAAGGTAGGCGATGGCACCACCACGGCCACTATTCTGGCCCGTG
GAATAGCCTGCCAGGGTATGCATGTGTTGCGCCAGAGCAAGGTGAACGTC
CAACTCCTGCGGGAGGGCATTCTCGAGGGATCGCGCGCTGTGTGCGATGC
TCTAGGTGAGATGTCCCAGTCGGTGGATACTATTGGCCAAGTGGAAGCAG
TGGCCAAGGTGGCACTGAATGGAGACGAACGGCTGGCGGAGCTGATTGGT
GACATCATTTTGGAGCTGGGCGATAGCGGCGTCATCCTGCTGAAGGAATC
CCACAGTCCCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCGCTT
CGGGCTACTATTCGCCATTCTTTGCCAAGCAATCTCATACCCTGGAATTG
GAGAATTGCTTGCTGCTGCTCACTTTGGCTAAGATTGATCAAGTGGAACA
GATACTTCCCGCTCTCGAGCTGGCCAGACTAAAAGAACGACCCCTTCTGA
TCATTGCCAAAAATTTTGGTAGCGATTTGCT
BO14241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16954-PA | 1677 | CG16954-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
| CG16954-PB | 1677 | CG16954-RB | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 152..966 | 17..831 | 4075 | 100 | Plus |
| Hsp60D-RA | 1894 | CG16954-RA | 86..900 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13448532..13449346 | 831..17 | 4075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:18:12 has no hits.
BO14241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:03 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16954-PB | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:33 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16954-PB | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:27 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 80..900 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:28 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 80..900 | 7..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:28 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13448532..13449352 | 7..831 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:27 Download gff for
BO14241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13448532..13449352 | 7..831 | 99 | | Minus |
BO14241.pep Sequence
Translation from 16 to 1708
> BO14241.pep
MLSRLGRSGRAGVRTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGR
NVLIEQLLISPRITKDGITVANNVQLGNRRQDMGVQLLRQATNNTNNKVG
DGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVCDALGEMS
QSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFD
EAKIQEGITIASGYYSPFFAKQSHTLELENCLLLLTLAKIDQVEQILPAL
ELARLKERPLLIIAKNFGSDLLKILVLNNLQGRVQVCAVKAPSFGDEQCE
EMEDIAFATGGHLLEDASSLADLSEEDLGEVMEAVVDAKETHLLQPINVN
EEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSELE
VSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQ
VGREIVKDALRLPCYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGD
LVVRGIVDPTKVLQSAMTSAAGIASLLATTEVLITKQPTKPKIPKNQVTK
DLAKLVGMASFLDH
BO14241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-PB | 558 | CG16954-PB | 1..558 | 1..558 | 2779 | 100 | Plus |
| Hsp60D-PA | 558 | CG16954-PA | 1..558 | 1..558 | 2779 | 100 | Plus |
| Hsp60-PB | 573 | CG12101-PB | 8..552 | 2..544 | 1133 | 43.4 | Plus |
| Hsp60-PA | 573 | CG12101-PA | 8..552 | 2..544 | 1133 | 43.4 | Plus |
| Hsp60C-PB | 576 | CG7235-PB | 24..550 | 14..538 | 1120 | 44.3 | Plus |
