Clone Sequence Records
BO14245.3prime Sequence
807 bp (723 high quality bases) assembled on 2006-05-29
> BO14245.3prime
ATGGTCTAGAAAGCTTGCCTCCTCTTCGTTAGTCGGCATTTGGTTGGCAT
CAGTCGCAATCATTTTGTATTTGTGACACGGTAGAATAATGACGAAGGAG
CAGATCAAGTCTGTGCTAACACTCATCACTCCGCCGGCATTGTTCATCAT
ACCGCAATAGTTGGGGGCCGAGAATACGGTGACCAGCTGTCGGTTGGCAA
AGAACTCGTATCCATCCTCCACAACCTCATGGGCGCGAACCATAAGTTGC
AAGTCGAAGGCTTTAAGAAAATCCCGAACTATGACCTTATCGAAGGTGAA
GCTCACACCGCGATCGTTGTGACCCCAGCCTTTGGTGGTGTGATTTAGAT
CCGCCCAAAGGAGATCGCACATAATACCCTCATCCGGAATATCAGTGGGT
CGCTGAATATGATTGATCTGTTGCAAATTCCGGAGCGATGGACTCAGTCC
TCCGTGGCAGCAGAAGATGCGCTCGCCCACCAATGCGGCCACCGGAAGCC
AGTTGAAGCAATCGGTGAAACTGTGCCACAGACGAACAGTGTGTCTACGT
TTGATCTCGTCATAAAATCCGTAAATTTTATTTATACTGGCGCTCTCGTG
ATTGCCGCGAAGCAAAAAGAAATTTAGCGGATATTTAACTTTGTAAGCAA
ATAGCAGGCAAATTGTTTCCAGCGATTGCTTGCCCCGGTCCACATAGTCA
CCGAGAAATAAATAGTTGGCTTTGGGTGGAAAGCCGCATGCCTTGAAAAT
CCTCAAGAGATCTGTAAACTGGCCATGAATATCGCCGCATATATTGACCG
GAGCCTG
BO14245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10930-PA | 945 | PpY-55A-RA | 154..942 | 807..19 | 3920 | 99.8 | Minus |
CG8822-PA | 1011 | PpD6-RA | 817..845 | 222..194 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpY-55A-RB | 1082 | CG10930-RB | 236..1024 | 807..19 | 3930 | 99.9 | Minus |
PpY-55A-RA | 1175 | CG10930-RA | 236..1024 | 807..19 | 3930 | 99.9 | Minus |
flw-RC | 3883 | CG2096-RC | 802..1082 | 720..440 | 400 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17955547..17956335 | 19..807 | 3930 | 99.9 | Plus |
X | 23542271 | X | 15359811..15360177 | 440..806 | 395 | 73.8 | Plus |
3R | 32079331 | 3R | 12425162..12425459 | 440..737 | 290 | 73.2 | Plus |
X | 23542271 | X | 10406550..10406701 | 720..569 | 280 | 78.9 | Minus |
2R | 25286936 | 2R | 22041989..22042073 | 153..237 | 215 | 83.5 | Plus |
X | 23542271 | X | 15359522..15359609 | 151..238 | 215 | 83 | Plus |
2R | 25286936 | 2R | 21881589..21881664 | 152..227 | 200 | 84.2 | Plus |
X | 23542271 | X | 10407164..10407268 | 227..123 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:17:55 has no hits.
BO14245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:07 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10930-PA | 154..945 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:41 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10930-PA | 154..945 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:11:12 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 236..1024 | 19..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:44 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 236..1024 | 19..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:44 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17955547..17956335 | 19..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:11:12 Download gff for
BO14245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13843052..13843840 | 19..807 | 99 | | Plus |
BO14245.5prime Sequence
943 bp (843 high quality bases) assembled on 2006-05-29
> BO14245.5prime
GAAGTTATCAGTCGACATGGCCGTCTTAACTACTCACGAAATAGATTGCA
TTATAAAGGAGCTCACATCCCTGAATGGAAGTGAGTGCACATTAAAGGAG
GAACTAATCGAGAGACTCATTCAACAGACTCGTGAAGTGATCAAATGGCA
ACCGATGCTGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGATATTC
ATGGCCAGTTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCA
CCCAAAGCCAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCA
ATCGCTGGAAACAATTTGCCTGCTATTTGCTTACAAAGTTAAATATCCGC
TAAATTTCTTTTTGCTTCGCGGCAATCACGAGAGCGCCAGTATAAATAAA
ATTTACGGATTTTATGACGAGATCAAACGTAGACACACTGTTCGTCTGTG
GCACAGTTTCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTGGTGG
GCGAGCGCATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAAT
TTGCAACAGATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGG
TATTATGTGCGATCTCCTTTGGGCGGATCTAAATCACACCACCAAAGGCT
GGGGTCACAACGATCGCGGTGTGAGCTTCACCTTCGATAAGGTCATAGTT
CGGGATTTTCTTAAAGCCTTCGACTTGCAACTTATGGTTCGCGCCCATGA
GGTTGTGGAGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTCACCG
TATTCTCGGCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTG
ATGAGTGTTAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTG
TCACAAATACAAAATGATTGCGACTGATGCCAACCCAATGGCC
BO14245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10930-PA | 945 | PpY-55A-RA | 1..919 | 17..935 | 4570 | 99.8 | Plus |
CG8822-PA | 1011 | PpD6-RA | 817..845 | 755..783 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpY-55A-RB | 1082 | CG10930-RB | 83..1006 | 17..940 | 4590 | 99.8 | Plus |
PpY-55A-RA | 1175 | CG10930-RA | 83..1006 | 17..940 | 4590 | 99.8 | Plus |
flw-RC | 3883 | CG2096-RC | 703..1082 | 158..537 | 415 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17955565..17956488 | 940..17 | 4590 | 99.8 | Minus |
X | 23542271 | X | 15359811..15360177 | 537..171 | 395 | 73.8 | Minus |
3R | 32079331 | 3R | 12425162..12425551 | 537..148 | 315 | 72.1 | Minus |
X | 23542271 | X | 10406451..10406701 | 158..408 | 295 | 74.5 | Plus |
2R | 25286936 | 2R | 22041989..22042073 | 824..740 | 215 | 83.5 | Minus |
X | 23542271 | X | 15359522..15359609 | 826..739 | 215 | 83 | Minus |
2R | 25286936 | 2R | 21881589..21881664 | 825..750 | 200 | 84.2 | Minus |
X | 23542271 | X | 10407164..10407268 | 750..854 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:12:05 has no hits.
BO14245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:08 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10930-PA | 1..926 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:42 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10930-PA | 1..926 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:09 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1008 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:14 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1008 | 17..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:14 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17955563..17956488 | 17..943 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:09 Download gff for
BO14245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13843068..13843993 | 17..943 | 99 | | Minus |
BO14245.complete Sequence
976 bp assembled on 2006-10-11
GenBank Submission: FJ633054
> BO14245.complete
GAAGTTATCAGTCGACATGGCCGTCTTAACTACTCACGAAATAGATTGCA
TTATAAAGGAGCTCACATCCCTGAATGGAAGTGAGTGCACATTAAAGGAG
GAACTAATCGAGAGACTCATTCAACAGACTCGTGAAGTGATCAAATGGCA
ACCGATGCTGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGATATTC
ATGGCCAGTTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCA
CCCAAAGCCAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCA
ATCGCTGGAAACAATTTGCCTGCTATTTGCTTACAAAGTTAAATATCCGC
TAAATTTCTTTTTGCTTCGCGGCAATCACGAGAGCGCCAGTATAAATAAA
ATTTACGGATTTTATGACGAGATCAAACGTAGACACACTGTTCGTCTGTG
GCACAGTTTCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTGGTGG
GCGAGCGCATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAAT
TTGCAACAGATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGG
TATTATGTGCGATCTCCTTTGGGCGGATCTAAATCACACCACCAAAGGCT
GGGGTCACAACGATCGCGGTGTGAGCTTCACCTTCGATAAGGTCATAGTT
CGGGATTTTCTTAAAGCCTTCGACTTGCAACTTATGGTTCGCGCCCATGA
GGTTGTGGAGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTCACCG
TATTCTCGGCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTG
ATGAGTGTTAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTG
TCACAAATACAAAATGATTGCGACTGATGCCAACCAAATGCCGACTAACG
AAGAGGAGGCAAGCTTTCTAGACCAT
BO14245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpY-55A-RB | 945 | CG10930-PB | 1..942 | 17..958 | 4695 | 99.9 | Plus |
PpY-55A-RA | 945 | CG10930-PA | 1..942 | 17..958 | 4695 | 99.9 | Plus |
flw-RC | 993 | CG2096-PC | 151..530 | 158..537 | 415 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpY-55A-RB | 1082 | CG10930-RB | 83..1024 | 17..958 | 4695 | 99.9 | Plus |
PpY-55A-RA | 1175 | CG10930-RA | 83..1024 | 17..958 | 4695 | 99.9 | Plus |
flw-RC | 3883 | CG2096-RC | 703..1082 | 158..537 | 415 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17955547..17956488 | 958..17 | 4695 | 99.9 | Minus |
X | 23542271 | X | 15359811..15360177 | 537..171 | 395 | 73.8 | Minus |
3R | 32079331 | 3R | 12425162..12425551 | 537..148 | 315 | 72.1 | Minus |
X | 23542271 | X | 10406451..10406701 | 158..408 | 295 | 74.5 | Plus |
2L | 23513712 | 2L | 3110520..3110603 | 739..822 | 270 | 88.1 | Plus |
3R | 32079331 | 3R | 12424854..12424956 | 845..743 | 230 | 81.6 | Minus |
2R | 25286936 | 2R | 22041989..22042073 | 824..740 | 215 | 83.5 | Minus |
X | 23542271 | X | 15359522..15359609 | 826..739 | 215 | 83 | Minus |
3R | 32079331 | 3R | 24519633..24519725 | 446..538 | 210 | 81.7 | Plus |
3R | 32079331 | 3R | 24519024..24519181 | 240..397 | 205 | 75.3 | Plus |
2R | 25286936 | 2R | 21881589..21881664 | 825..750 | 200 | 84.2 | Minus |
X | 23542271 | X | 10407164..10407268 | 750..854 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:41 has no hits.
BO14245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:07 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:17 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1024 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:37 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1024 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:07 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1024 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:37 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpY-55A-RA | 83..1024 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:37 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17955544..17956488 | 17..960 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:37 Download gff for
BO14245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13843049..13843993 | 17..960 | 99 | | Minus |
BO14245.pep Sequence
Translation from 16 to 976
> BO14245.pep
MAVLTTHEIDCIIKELTSLNGSECTLKEELIERLIQQTREVIKWQPMLLE
LQAPVNICGDIHGQFTDLLRIFKACGFPPKANYLFLGDYVDRGKQSLETI
CLLFAYKVKYPLNFFLLRGNHESASINKIYGFYDEIKRRHTVRLWHSFTD
CFNWLPVAALVGERIFCCHGGLSPSLRNLQQINHIQRPTDIPDEGIMCDL
LWADLNHTTKGWGHNDRGVSFTFDKVIVRDFLKAFDLQLMVRAHEVVEDG
YEFFANRQLVTVFSAPNYCGMMNNAGGVMSVSTDLICSFVIILPCHKYKM
IATDANQMPTNEEEASFLDH
BO14245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpY-55A-PB | 314 | CG10930-PB | 1..314 | 1..314 | 1691 | 100 | Plus |
PpY-55A-PA | 314 | CG10930-PA | 1..314 | 1..314 | 1691 | 100 | Plus |
Pp1alpha-96A-PB | 327 | CG6593-PB | 7..303 | 9..301 | 1020 | 63 | Plus |
Pp1alpha-96A-PA | 327 | CG6593-PA | 7..303 | 9..301 | 1020 | 63 | Plus |
flw-PC | 330 | CG2096-PC | 8..300 | 9..297 | 1018 | 62.8 | Plus |