Clone BO14245 Report

Search the DGRC for BO14245

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptPpY-55A-RA
Protein status:BO14245.pep: validated full length
Sequenced Size:976

Clone Sequence Records

BO14245.3prime Sequence

807 bp (723 high quality bases) assembled on 2006-05-29

> BO14245.3prime
ATGGTCTAGAAAGCTTGCCTCCTCTTCGTTAGTCGGCATTTGGTTGGCAT
CAGTCGCAATCATTTTGTATTTGTGACACGGTAGAATAATGACGAAGGAG
CAGATCAAGTCTGTGCTAACACTCATCACTCCGCCGGCATTGTTCATCAT
ACCGCAATAGTTGGGGGCCGAGAATACGGTGACCAGCTGTCGGTTGGCAA
AGAACTCGTATCCATCCTCCACAACCTCATGGGCGCGAACCATAAGTTGC
AAGTCGAAGGCTTTAAGAAAATCCCGAACTATGACCTTATCGAAGGTGAA
GCTCACACCGCGATCGTTGTGACCCCAGCCTTTGGTGGTGTGATTTAGAT
CCGCCCAAAGGAGATCGCACATAATACCCTCATCCGGAATATCAGTGGGT
CGCTGAATATGATTGATCTGTTGCAAATTCCGGAGCGATGGACTCAGTCC
TCCGTGGCAGCAGAAGATGCGCTCGCCCACCAATGCGGCCACCGGAAGCC
AGTTGAAGCAATCGGTGAAACTGTGCCACAGACGAACAGTGTGTCTACGT
TTGATCTCGTCATAAAATCCGTAAATTTTATTTATACTGGCGCTCTCGTG
ATTGCCGCGAAGCAAAAAGAAATTTAGCGGATATTTAACTTTGTAAGCAA
ATAGCAGGCAAATTGTTTCCAGCGATTGCTTGCCCCGGTCCACATAGTCA
CCGAGAAATAAATAGTTGGCTTTGGGTGGAAAGCCGCATGCCTTGAAAAT
CCTCAAGAGATCTGTAAACTGGCCATGAATATCGCCGCATATATTGACCG
GAGCCTG

BO14245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10930-PA 945 PpY-55A-RA 154..942 807..19 3920 99.8 Minus
CG8822-PA 1011 PpD6-RA 817..845 222..194 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
PpY-55A-RB 1082 CG10930-RB 236..1024 807..19 3930 99.9 Minus
PpY-55A-RA 1175 CG10930-RA 236..1024 807..19 3930 99.9 Minus
flw-RC 3883 CG2096-RC 802..1082 720..440 400 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17955547..17956335 19..807 3930 99.9 Plus
X 23542271 X 15359811..15360177 440..806 395 73.8 Plus
3R 32079331 3R 12425162..12425459 440..737 290 73.2 Plus
X 23542271 X 10406550..10406701 720..569 280 78.9 Minus
2R 25286936 2R 22041989..22042073 153..237 215 83.5 Plus
X 23542271 X 15359522..15359609 151..238 215 83 Plus
2R 25286936 2R 21881589..21881664 152..227 200 84.2 Plus
X 23542271 X 10407164..10407268 227..123 195 79 Minus
Blast to na_te.dros performed on 2015-02-10 17:17:55 has no hits.

BO14245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:07 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10930-PA 154..945 16..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:41 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10930-PA 154..945 16..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:11:12 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 236..1024 19..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:44 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 236..1024 19..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:44 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17955547..17956335 19..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:11:12 Download gff for BO14245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13843052..13843840 19..807 99   Plus

BO14245.5prime Sequence

943 bp (843 high quality bases) assembled on 2006-05-29

> BO14245.5prime
GAAGTTATCAGTCGACATGGCCGTCTTAACTACTCACGAAATAGATTGCA
TTATAAAGGAGCTCACATCCCTGAATGGAAGTGAGTGCACATTAAAGGAG
GAACTAATCGAGAGACTCATTCAACAGACTCGTGAAGTGATCAAATGGCA
ACCGATGCTGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGATATTC
ATGGCCAGTTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCA
CCCAAAGCCAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCA
ATCGCTGGAAACAATTTGCCTGCTATTTGCTTACAAAGTTAAATATCCGC
TAAATTTCTTTTTGCTTCGCGGCAATCACGAGAGCGCCAGTATAAATAAA
ATTTACGGATTTTATGACGAGATCAAACGTAGACACACTGTTCGTCTGTG
GCACAGTTTCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTGGTGG
GCGAGCGCATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAAT
TTGCAACAGATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGG
TATTATGTGCGATCTCCTTTGGGCGGATCTAAATCACACCACCAAAGGCT
GGGGTCACAACGATCGCGGTGTGAGCTTCACCTTCGATAAGGTCATAGTT
CGGGATTTTCTTAAAGCCTTCGACTTGCAACTTATGGTTCGCGCCCATGA
GGTTGTGGAGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTCACCG
TATTCTCGGCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTG
ATGAGTGTTAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTG
TCACAAATACAAAATGATTGCGACTGATGCCAACCCAATGGCC

BO14245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10930-PA 945 PpY-55A-RA 1..919 17..935 4570 99.8 Plus
CG8822-PA 1011 PpD6-RA 817..845 755..783 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
PpY-55A-RB 1082 CG10930-RB 83..1006 17..940 4590 99.8 Plus
PpY-55A-RA 1175 CG10930-RA 83..1006 17..940 4590 99.8 Plus
flw-RC 3883 CG2096-RC 703..1082 158..537 415 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17955565..17956488 940..17 4590 99.8 Minus
X 23542271 X 15359811..15360177 537..171 395 73.8 Minus
3R 32079331 3R 12425162..12425551 537..148 315 72.1 Minus
X 23542271 X 10406451..10406701 158..408 295 74.5 Plus
2R 25286936 2R 22041989..22042073 824..740 215 83.5 Minus
X 23542271 X 15359522..15359609 826..739 215 83 Minus
2R 25286936 2R 21881589..21881664 825..750 200 84.2 Minus
X 23542271 X 10407164..10407268 750..854 195 79 Plus
Blast to na_te.dros performed on 2015-02-11 16:12:05 has no hits.

BO14245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:08 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10930-PA 1..926 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:42 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10930-PA 1..926 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:09 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1008 17..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:14 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1008 17..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:14 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17955563..17956488 17..943 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:09 Download gff for BO14245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13843068..13843993 17..943 99   Minus

BO14245.complete Sequence

976 bp assembled on 2006-10-11

GenBank Submission: FJ633054

> BO14245.complete
GAAGTTATCAGTCGACATGGCCGTCTTAACTACTCACGAAATAGATTGCA
TTATAAAGGAGCTCACATCCCTGAATGGAAGTGAGTGCACATTAAAGGAG
GAACTAATCGAGAGACTCATTCAACAGACTCGTGAAGTGATCAAATGGCA
ACCGATGCTGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGATATTC
ATGGCCAGTTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCA
CCCAAAGCCAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCA
ATCGCTGGAAACAATTTGCCTGCTATTTGCTTACAAAGTTAAATATCCGC
TAAATTTCTTTTTGCTTCGCGGCAATCACGAGAGCGCCAGTATAAATAAA
ATTTACGGATTTTATGACGAGATCAAACGTAGACACACTGTTCGTCTGTG
GCACAGTTTCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTGGTGG
GCGAGCGCATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAAT
TTGCAACAGATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGG
TATTATGTGCGATCTCCTTTGGGCGGATCTAAATCACACCACCAAAGGCT
GGGGTCACAACGATCGCGGTGTGAGCTTCACCTTCGATAAGGTCATAGTT
CGGGATTTTCTTAAAGCCTTCGACTTGCAACTTATGGTTCGCGCCCATGA
GGTTGTGGAGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTCACCG
TATTCTCGGCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTG
ATGAGTGTTAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTG
TCACAAATACAAAATGATTGCGACTGATGCCAACCAAATGCCGACTAACG
AAGAGGAGGCAAGCTTTCTAGACCAT

BO14245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
PpY-55A-RB 945 CG10930-PB 1..942 17..958 4695 99.9 Plus
PpY-55A-RA 945 CG10930-PA 1..942 17..958 4695 99.9 Plus
flw-RC 993 CG2096-PC 151..530 158..537 415 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
PpY-55A-RB 1082 CG10930-RB 83..1024 17..958 4695 99.9 Plus
PpY-55A-RA 1175 CG10930-RA 83..1024 17..958 4695 99.9 Plus
flw-RC 3883 CG2096-RC 703..1082 158..537 415 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17955547..17956488 958..17 4695 99.9 Minus
X 23542271 X 15359811..15360177 537..171 395 73.8 Minus
3R 32079331 3R 12425162..12425551 537..148 315 72.1 Minus
X 23542271 X 10406451..10406701 158..408 295 74.5 Plus
2L 23513712 2L 3110520..3110603 739..822 270 88.1 Plus
3R 32079331 3R 12424854..12424956 845..743 230 81.6 Minus
2R 25286936 2R 22041989..22042073 824..740 215 83.5 Minus
X 23542271 X 15359522..15359609 826..739 215 83 Minus
3R 32079331 3R 24519633..24519725 446..538 210 81.7 Plus
3R 32079331 3R 24519024..24519181 240..397 205 75.3 Plus
2R 25286936 2R 21881589..21881664 825..750 200 84.2 Minus
X 23542271 X 10407164..10407268 750..854 195 79 Plus
Blast to na_te.dros performed on 2014-11-27 16:15:41 has no hits.

BO14245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:07 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 1..945 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:17 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1024 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:37 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1024 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:07 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1024 17..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:37 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
PpY-55A-RA 83..1024 17..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:37 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17955544..17956488 17..960 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:37 Download gff for BO14245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13843049..13843993 17..960 99   Minus

BO14245.pep Sequence

Translation from 16 to 976

> BO14245.pep
MAVLTTHEIDCIIKELTSLNGSECTLKEELIERLIQQTREVIKWQPMLLE
LQAPVNICGDIHGQFTDLLRIFKACGFPPKANYLFLGDYVDRGKQSLETI
CLLFAYKVKYPLNFFLLRGNHESASINKIYGFYDEIKRRHTVRLWHSFTD
CFNWLPVAALVGERIFCCHGGLSPSLRNLQQINHIQRPTDIPDEGIMCDL
LWADLNHTTKGWGHNDRGVSFTFDKVIVRDFLKAFDLQLMVRAHEVVEDG
YEFFANRQLVTVFSAPNYCGMMNNAGGVMSVSTDLICSFVIILPCHKYKM
IATDANQMPTNEEEASFLDH

BO14245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
PpY-55A-PB 314 CG10930-PB 1..314 1..314 1691 100 Plus
PpY-55A-PA 314 CG10930-PA 1..314 1..314 1691 100 Plus
Pp1alpha-96A-PB 327 CG6593-PB 7..303 9..301 1020 63 Plus
Pp1alpha-96A-PA 327 CG6593-PA 7..303 9..301 1020 63 Plus
flw-PC 330 CG2096-PC 8..300 9..297 1018 62.8 Plus