Clone Sequence Records
BO14247.3prime Sequence
833 bp (734 high quality bases) assembled on 2006-05-29
> BO14247.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCACCACCTGGATGACGTCCTCGTCGG
CCATCACATGGGCAATCCCCACGCGCTGCGGCGAGTATTTCGTGGAGGTG
CCCCACACCAGGGCATACTTGAACTGCGCCGCCAGCGTGCGATGGATGGC
ATGGCACACATGCTCCACACTGACGCCCTTTCTCAGAATCAATCCATCGT
CAAAGTCTGGAGGAGCGCCTGGCTTCTTTGTGTACACTCTGATGAGCTGG
AGAGCTTCCCAGAGCGCCTCCATCATGTAGTCCAGATTAAGTTTCATGTT
GCAACTAACCACTATCGAGTTTGGCTGGCGCGCCAAGCGGTCCACCTCCT
CGATGGAGATCTGATCGATCTTGTTGTAGACATACAGACAGGGCAGATAC
ACACGGTTGGCGGTGACCACGTCGATGAACTCGTCCTCGGTGCAGTCTTC
GCGGAAGAGCACCTCGGCGTTGAAGATCTTGAAGGAGTGCAGGATGGTCT
GGACCATTTTCTCGTTGCAGCGCGTAAGGGAACAGGTGGCGTTGAAGCTC
AGGCCGCCGCCCTTCTTCTGCTTGAAGTAGATGTTGGGCTTGCGCTTGTT
CAGACGAATGCCCACGCTCTCCAGCTCTCGCTCGAGCAGCTCCCGGTGAA
CGTTGGGCTTGGTGGCGTCCAGCATCATCAGCACCAAATCAGCGGTGCGG
GCTACGGCAATGACCTGACGACCACGCCCCTTGCCCTGGGCAGCGCCCTC
GATGATTCCGGGCAGATCCAGCAACTGGATATTGGCACCCTGATACTCAA
TGACACCCGGAATGCAGGTCAAAGTGGTGAACT
BO14247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 1092 | CG6195-RA | 275..1089 | 833..19 | 4075 | 100 | Minus |
CG8340-PA | 1107 | 128up-RA | 742..777 | 375..340 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 393..1207 | 833..19 | 4075 | 100 | Minus |
128up-RA | 1304 | CG8340-RA | 440..548 | 802..694 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647212..19647868 | 177..833 | 3285 | 100 | Plus |
3R | 32079331 | 3R | 19646973..19647133 | 19..179 | 805 | 100 | Plus |
2R | 25286936 | 2R | 12037922..12038030 | 802..694 | 215 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:03:10 has no hits.
BO14247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:12 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 275..1092 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:46 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 275..1092 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:10:13 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 485..1307 | 11..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:38 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 393..1215 | 11..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:38 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19646965..19647131 | 11..177 | 98 | <- | Plus |
3R | 19647213..19647868 | 178..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:10:13 Download gff for
BO14247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15472687..15472853 | 11..177 | 98 | <- | Plus |
arm_3R | 15472935..15473590 | 178..833 | 100 | | Plus |
BO14247.5prime Sequence
774 bp (773 high quality bases) assembled on 2006-05-29
> BO14247.5prime
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGA
BO14247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 1092 | CG6195-RA | 1..758 | 17..774 | 3740 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 118..876 | 16..774 | 3765 | 99.7 | Plus |
128up-RA | 1304 | CG8340-RA | 440..548 | 322..430 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647385..19647878 | 774..281 | 2470 | 100 | Minus |
3R | 32079331 | 3R | 19647931..19648133 | 281..79 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 19648229..19648293 | 80..16 | 295 | 96.9 | Minus |
2R | 25286936 | 2R | 12037922..12038030 | 322..430 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:25:22 has no hits.
BO14247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:13 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:48 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:49 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..967 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:20 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 112..875 | 9..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:20 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19648229..19648296 | 9..80 | 91 | | Minus |
3R | 19647386..19647877 | 282..773 | 100 | <- | Minus |
3R | 19647931..19648131 | 81..281 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:49 Download gff for
BO14247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15473108..15473599 | 282..773 | 100 | <- | Minus |
arm_3R | 15473653..15473853 | 81..281 | 100 | <- | Minus |
arm_3R | 15473951..15474018 | 9..80 | 91 | | Minus |
BO14247.complete Sequence
1123 bp assembled on 2006-10-11
GenBank Submission: FJ633055
> BO14247.complete
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGAGGAGGTGGACCGCTTGGCGCGCCAGC
CAAACTCGATAGTGGTTAGTTGCAACATGAAACTTAATCTGGACTACATG
ATGGAGGCGCTCTGGGAAGCTCTCCAGCTCATCAGAGTGTACACAAAGAA
GCCAGGCGCTCCTCCAGACTTTGACGATGGATTGATTCTGAGAAAGGGCG
TCAGTGTGGAGCATGTGTGCCATGCCATCCATCGCACGCTGGCGGCGCAG
TTCAAGTATGCCCTGGTGTGGGGCACCTCCACGAAATACTCGCCGCAGCG
CGTGGGGATTGCCCATGTGATGGCCGACGAGGACGTCATCCAGGTGGTGA
AGAAAGCAAGCTTTCTAGACCAT
BO14247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1092 | CG6195-PA | 1..1089 | 17..1105 | 5415 | 99.8 | Plus |
128up-RA | 1107 | CG8340-PA | 315..423 | 322..430 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 118..1207 | 16..1105 | 5420 | 99.8 | Plus |
128up-RA | 1304 | CG8340-RA | 440..548 | 322..430 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647212..19647878 | 947..281 | 3335 | 100 | Minus |
3R | 32079331 | 3R | 19647931..19648133 | 281..79 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 19646973..19647133 | 1105..945 | 805 | 100 | Minus |
3R | 32079331 | 3R | 19648229..19648293 | 80..16 | 295 | 96.9 | Minus |
2R | 25286936 | 2R | 12037922..12038030 | 322..430 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:06 has no hits.
BO14247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:09 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 1..1092 | 17..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:19 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..1307 | 9..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:49 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 211..1299 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:10 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..1307 | 9..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:42 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 119..1207 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:42 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19646971..19647131 | 947..1107 | 98 | <- | Minus |
3R | 19647213..19647877 | 282..946 | 100 | <- | Minus |
3R | 19647931..19648131 | 81..281 | 100 | <- | Minus |
3R | 19648229..19648292 | 17..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:49 Download gff for
BO14247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15472693..15472853 | 947..1107 | 98 | <- | Minus |
arm_3R | 15472935..15473599 | 282..946 | 100 | <- | Minus |
arm_3R | 15473653..15473853 | 81..281 | 100 | <- | Minus |
arm_3R | 15473951..15474014 | 17..80 | 96 | | Minus |
BO14247.pep Sequence
Translation from 16 to 1123
> BO14247.pep
MGILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEK
GDGFDVLKSGDARVALIGFPSVGKSTMLSTLTKTESEAANYEFTTLTCIP
GVIEYQGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK
PNVHRELLERELESVGIRLNKRKPNIYFKQKKGGGLSFNATCSLTRCNEK
MVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYLPCLYVYNKIDQI
SIEEVDRLARQPNSIVVSCNMKLNLDYMMEALWEALQLIRVYTKKPGAPP
DFDDGLILRKGVSVEHVCHAIHRTLAAQFKYALVWGTSTKYSPQRVGIAH
VMADEDVIQVVKKASFLDH
BO14247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 363 | CG6195-PA | 1..363 | 1..363 | 1853 | 100 | Plus |
128up-PA | 368 | CG8340-PA | 4..367 | 3..363 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 206..319 | 62..172 | 191 | 40.4 | Plus |