Clone BO14247 Report

Search the DGRC for BO14247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG6195-RA
Protein status:BO14247.pep: validated full length
Sequenced Size:1123

Clone Sequence Records

BO14247.3prime Sequence

833 bp (734 high quality bases) assembled on 2006-05-29

> BO14247.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCACCACCTGGATGACGTCCTCGTCGG
CCATCACATGGGCAATCCCCACGCGCTGCGGCGAGTATTTCGTGGAGGTG
CCCCACACCAGGGCATACTTGAACTGCGCCGCCAGCGTGCGATGGATGGC
ATGGCACACATGCTCCACACTGACGCCCTTTCTCAGAATCAATCCATCGT
CAAAGTCTGGAGGAGCGCCTGGCTTCTTTGTGTACACTCTGATGAGCTGG
AGAGCTTCCCAGAGCGCCTCCATCATGTAGTCCAGATTAAGTTTCATGTT
GCAACTAACCACTATCGAGTTTGGCTGGCGCGCCAAGCGGTCCACCTCCT
CGATGGAGATCTGATCGATCTTGTTGTAGACATACAGACAGGGCAGATAC
ACACGGTTGGCGGTGACCACGTCGATGAACTCGTCCTCGGTGCAGTCTTC
GCGGAAGAGCACCTCGGCGTTGAAGATCTTGAAGGAGTGCAGGATGGTCT
GGACCATTTTCTCGTTGCAGCGCGTAAGGGAACAGGTGGCGTTGAAGCTC
AGGCCGCCGCCCTTCTTCTGCTTGAAGTAGATGTTGGGCTTGCGCTTGTT
CAGACGAATGCCCACGCTCTCCAGCTCTCGCTCGAGCAGCTCCCGGTGAA
CGTTGGGCTTGGTGGCGTCCAGCATCATCAGCACCAAATCAGCGGTGCGG
GCTACGGCAATGACCTGACGACCACGCCCCTTGCCCTGGGCAGCGCCCTC
GATGATTCCGGGCAGATCCAGCAACTGGATATTGGCACCCTGATACTCAA
TGACACCCGGAATGCAGGTCAAAGTGGTGAACT

BO14247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 1092 CG6195-RA 275..1089 833..19 4075 100 Minus
CG8340-PA 1107 128up-RA 742..777 375..340 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 393..1207 833..19 4075 100 Minus
128up-RA 1304 CG8340-RA 440..548 802..694 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647212..19647868 177..833 3285 100 Plus
3R 32079331 3R 19646973..19647133 19..179 805 100 Plus
2R 25286936 2R 12037922..12038030 802..694 215 79.8 Minus
Blast to na_te.dros performed on 2015-02-12 12:03:10 has no hits.

BO14247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:12 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 275..1092 15..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:46 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 275..1092 15..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:10:13 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 485..1307 11..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:38 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 393..1215 11..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:38 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19646965..19647131 11..177 98 <- Plus
3R 19647213..19647868 178..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:10:13 Download gff for BO14247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15472687..15472853 11..177 98 <- Plus
arm_3R 15472935..15473590 178..833 100   Plus

BO14247.5prime Sequence

774 bp (773 high quality bases) assembled on 2006-05-29

> BO14247.5prime
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGA

BO14247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 1092 CG6195-RA 1..758 17..774 3740 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 118..876 16..774 3765 99.7 Plus
128up-RA 1304 CG8340-RA 440..548 322..430 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647385..19647878 774..281 2470 100 Minus
3R 32079331 3R 19647931..19648133 281..79 1015 100 Minus
3R 32079331 3R 19648229..19648293 80..16 295 96.9 Minus
2R 25286936 2R 12037922..12038030 322..430 215 79.8 Plus
Blast to na_te.dros performed on 2015-02-11 13:25:22 has no hits.

BO14247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:13 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 1..757 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:48 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 1..757 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:49 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..967 9..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:20 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 112..875 9..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:20 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19648229..19648296 9..80 91   Minus
3R 19647386..19647877 282..773 100 <- Minus
3R 19647931..19648131 81..281 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:49 Download gff for BO14247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15473108..15473599 282..773 100 <- Minus
arm_3R 15473653..15473853 81..281 100 <- Minus
arm_3R 15473951..15474018 9..80 91   Minus

BO14247.complete Sequence

1123 bp assembled on 2006-10-11

GenBank Submission: FJ633055

> BO14247.complete
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGAGGAGGTGGACCGCTTGGCGCGCCAGC
CAAACTCGATAGTGGTTAGTTGCAACATGAAACTTAATCTGGACTACATG
ATGGAGGCGCTCTGGGAAGCTCTCCAGCTCATCAGAGTGTACACAAAGAA
GCCAGGCGCTCCTCCAGACTTTGACGATGGATTGATTCTGAGAAAGGGCG
TCAGTGTGGAGCATGTGTGCCATGCCATCCATCGCACGCTGGCGGCGCAG
TTCAAGTATGCCCTGGTGTGGGGCACCTCCACGAAATACTCGCCGCAGCG
CGTGGGGATTGCCCATGTGATGGCCGACGAGGACGTCATCCAGGTGGTGA
AGAAAGCAAGCTTTCTAGACCAT

BO14247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1092 CG6195-PA 1..1089 17..1105 5415 99.8 Plus
128up-RA 1107 CG8340-PA 315..423 322..430 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 118..1207 16..1105 5420 99.8 Plus
128up-RA 1304 CG8340-RA 440..548 322..430 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647212..19647878 947..281 3335 100 Minus
3R 32079331 3R 19647931..19648133 281..79 1015 100 Minus
3R 32079331 3R 19646973..19647133 1105..945 805 100 Minus
3R 32079331 3R 19648229..19648293 80..16 295 96.9 Minus
2R 25286936 2R 12037922..12038030 322..430 215 79.8 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:06 has no hits.

BO14247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:09 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 1..1092 17..1109 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:19 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..1307 9..1113 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:49 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 211..1299 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:10 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..1307 9..1113 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:42 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 119..1207 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:42 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19646971..19647131 947..1107 98 <- Minus
3R 19647213..19647877 282..946 100 <- Minus
3R 19647931..19648131 81..281 100 <- Minus
3R 19648229..19648292 17..80 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:49 Download gff for BO14247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15472693..15472853 947..1107 98 <- Minus
arm_3R 15472935..15473599 282..946 100 <- Minus
arm_3R 15473653..15473853 81..281 100 <- Minus
arm_3R 15473951..15474014 17..80 96   Minus

BO14247.pep Sequence

Translation from 16 to 1123

> BO14247.pep
MGILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEK
GDGFDVLKSGDARVALIGFPSVGKSTMLSTLTKTESEAANYEFTTLTCIP
GVIEYQGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK
PNVHRELLERELESVGIRLNKRKPNIYFKQKKGGGLSFNATCSLTRCNEK
MVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYLPCLYVYNKIDQI
SIEEVDRLARQPNSIVVSCNMKLNLDYMMEALWEALQLIRVYTKKPGAPP
DFDDGLILRKGVSVEHVCHAIHRTLAAQFKYALVWGTSTKYSPQRVGIAH
VMADEDVIQVVKKASFLDH

BO14247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 363 CG6195-PA 1..363 1..363 1853 100 Plus
128up-PA 368 CG8340-PA 4..367 3..363 1056 56.3 Plus
CG13390-PA 381 CG13390-PA 206..319 62..172 191 40.4 Plus