Clone BO14250 Report

Search the DGRC for BO14250

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptRpt4R-RA
Protein status:BO14250.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO14250.3prime Sequence

907 bp (789 high quality bases) assembled on 2006-05-29

> BO14250.3prime
ATGGTCTAGAAAGCTTGCTATAGGCTTGTAGTCCAGACGCGACTCCAGCT
TCTTATTGTCCGCTATTTTGCGGACGGCCTTCATGAAATCTTCTTGAATG
ACAAACTCCCTATCGCAGCGGAGGGCAAAAAGCCCGGCTTCCGTGCAAAT
GTTCCGTAGATCGGCACCATTGAACAAATCGGAGAGCTTAACCACCGCCT
CATAGTCGATTTCGCCGCGTTTGTTCAGTGGTTCGGCGTGAATCTTAAGA
ATGTCCATACGCGCCACTTCGTTGGGCAGCGGAATTTCCAATTTGCGATC
AAGTCGTCCAGGACGCAGCAGCGCCGGATCCAGTGTATCTGGACGATTGG
TGGCCATGATCATTTTCACCTGGCCAAGAGCATCGAATCCATCCATCTGG
TTAAGCAGTTCCATCAGCGTGCGCTGGATCTCTCGGTCGGCGGATGTTCC
CTCCGAGAAGCGGCGACCACCGATTGCGTCGATCTCGTCCATGAATATGA
TACACGGCTGGTGGTCACGGGCGTAGGCAAACATCTCCCGGATCAGTCGG
GCACTCTCGCCAATGTACTTGTCCACAATTGCAGAGGAAACGACCTTCAA
GAAGTTGGCGTCCATCTGGGAGGCGATGGCGCGGGCCAGGAGAGTTTTTC
CGGTGCCAGGCGGTCCGTAGAGCAGGCATCCCTTGGGCGGACTTATGCCA
ACGCGTAGGAAAATATCTGGATTTAGTAGCGGCAGTTCAATGACCTCGCG
AAGCTCGCGGATTTGCTGACCAAGTCCACCGATTTCAGCGTAGTTTACGT
TTCCGGGATCTTCATGGGTCATGTTGTACACCAGGGGATCCACTTCCCGC
GGCAAATAACGCATGATGGTGAGAGTGGTCACATCCAGGGCGACCCGTGT
GCCGGGC

BO14250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7257-PA 1197 CG7257-RA 306..1194 907..19 4220 98.9 Minus
CG3455-PA 1173 Rpt4-RA 667..848 522..341 285 86.2 Minus
CG3455-PA 1173 Rpt4-RA 565..638 624..551 170 89.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 498..1386 907..19 4310 99 Minus
Rpt4R-RA 1391 CG7257-RA 387..1275 907..19 4310 99 Minus
Rpt4-RB 1465 CG3455-RB 427..1309 905..23 1385 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942790..11943369 598..19 2810 99 Minus
3L 28110227 3L 11942409..11942724 907..592 1535 99.1 Minus
X 23542271 X 6290064..6290700 269..905 1220 79.4 Plus
X 23542271 X 21317254..21317378 362..238 190 76.8 Minus
Blast to na_te.dros performed on 2015-02-10 23:28:00 has no hits.

BO14250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:18 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 306..1197 18..907 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:55 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 306..1197 18..907 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:17:40 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 387..1284 12..907 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:50:33 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 387..1284 12..907 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:50:33 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11942409..11942721 595..907 99 -> Minus
3L 11942794..11943378 12..594 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:17:40 Download gff for BO14250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935509..11935821 595..907 99 -> Minus
arm_3L 11935894..11936478 12..594 98   Minus

BO14250.5prime Sequence

912 bp (749 high quality bases) assembled on 2006-05-29

> BO14250.5prime
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGNCATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTTGGCCAGTGAAATGATCATGGCCACCAATCGTCCAGATACACTGGAT
CCGGCGCTGCTG

BO14250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7257-PA 1197 CG7257-RA 1..837 17..853 3991 99 Plus
CG7257-PA 1197 CG7257-RA 848..897 863..912 225 98 Plus
CG3455-PA 1173 Rpt4-RA 667..797 707..837 211 86.2 Plus
CG3455-PA 1173 Rpt4-RA 565..638 605..678 170 89.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 193..1089 17..912 4284 98.7 Plus
Rpt4R-RA 1391 CG7257-RA 82..978 17..912 4284 98.7 Plus
Rpt4-RB 1465 CG3455-RB 263..1016 160..912 1439 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942104..11942724 17..637 3075 99.7 Plus
X 23542271 X 6290111..6290775 912..249 1269 79.7 Minus
3L 28110227 3L 11942790..11943072 631..912 1204 95.8 Plus
Blast to na_te.dros performed on 2015-02-04 02:14:53 has no hits.

BO14250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:19 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 1..897 17..912 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:56 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 1..897 17..912 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:58 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 80..978 14..912 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:02 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 80..978 14..912 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:02 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11942102..11942721 14..634 99 -> Plus
3L 11942794..11943072 635..912 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:58 Download gff for BO14250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935202..11935821 14..634 99 -> Plus
arm_3L 11935894..11936172 635..912 96   Plus

BO14250.complete Sequence

1228 bp assembled on 2006-10-11

GenBank Submission: FJ638725

> BO14250.complete
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGCAATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTGGCCAGGTGAAAATGATCATGGCCACCAATCGTCCAGATACACTGGA
TCCGGCGCTGCTGCGTCCTGGACGACTTGATCGCAAATTGGAAATTCCGC
TGCCCAACGAAGTGGCGCGTATGGACATTCTTAAGATTCACGCCGAACCA
CTGAACAAACGCGGCGAAATCGACTATGAGGCGGTGGTTAAGCTCTCCGA
TTTGTTCAATGGTGCCGATCTACGGAACATTTGCACGGAAGCCGGGCTTT
TTGCCCTCCGCTGCGATAGGGAGTTTGTCATTCAAGAAGATTTCATGAAG
GCCGTCCGCAAAATAGCGGACAATAAGAAGCTGGAGTCGCGTCTGGACTA
CAAGCCTATAGCAAGCTTTCTAGACCAT

BO14250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1197 CG7257-PB 1..1194 17..1210 5850 99.3 Plus
Rpt4R-RA 1197 CG7257-PA 1..1194 17..1210 5850 99.3 Plus
Rpt4-RB 1194 CG3455-PB 141..1187 160..1206 1680 77.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 193..1386 17..1210 5850 99.3 Plus
Rpt4R-RA 1391 CG7257-RA 82..1275 17..1210 5850 99.3 Plus
Rpt4-RB 1465 CG3455-RB 263..1309 160..1206 1680 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942104..11942724 17..637 3075 99.7 Plus
3L 28110227 3L 11942790..11943369 631..1210 2810 99 Plus
X 23542271 X 6290064..6290775 960..249 1400 79.8 Minus
X 23542271 X 21317254..21317378 867..991 190 76.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:21:12 has no hits.

BO14250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:12 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
CG7257-RA 1..1197 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:21 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
CG7257-RA 80..1284 14..1217 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:51 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 82..1275 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:13 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
CG7257-RA 80..1284 14..1217 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:53 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 82..1275 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:53 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11942104..11942721 17..634 99 -> Plus
3L 11942794..11943369 635..1212 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:51 Download gff for BO14250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935204..11935821 17..634 99 -> Plus
arm_3L 11935894..11936469 635..1212 98   Plus

BO14250.pep Sequence

Translation from 16 to 1228

> BO14250.pep
MSAPLANPPTDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYE
KSEDDLKALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEK
LKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQ
IRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQM
DANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGR
RFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLR
PGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGA
DLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPIAS
FLDH

BO14250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-PB 398 CG7257-PB 1..398 1..398 2032 100 Plus
Rpt4R-PA 398 CG7257-PA 1..398 1..398 2032 100 Plus
Rpt4-PB 397 CG3455-PB 5..397 6..398 1695 82.7 Plus
Rpt6-PA 405 CG1489-PA 36..403 30..398 849 46.3 Plus
Rpt6R-PA 399 CG2241-PA 31..383 30..383 822 46.9 Plus