Clone Sequence Records
BO14250.3prime Sequence
907 bp (789 high quality bases) assembled on 2006-05-29
> BO14250.3prime
ATGGTCTAGAAAGCTTGCTATAGGCTTGTAGTCCAGACGCGACTCCAGCT
TCTTATTGTCCGCTATTTTGCGGACGGCCTTCATGAAATCTTCTTGAATG
ACAAACTCCCTATCGCAGCGGAGGGCAAAAAGCCCGGCTTCCGTGCAAAT
GTTCCGTAGATCGGCACCATTGAACAAATCGGAGAGCTTAACCACCGCCT
CATAGTCGATTTCGCCGCGTTTGTTCAGTGGTTCGGCGTGAATCTTAAGA
ATGTCCATACGCGCCACTTCGTTGGGCAGCGGAATTTCCAATTTGCGATC
AAGTCGTCCAGGACGCAGCAGCGCCGGATCCAGTGTATCTGGACGATTGG
TGGCCATGATCATTTTCACCTGGCCAAGAGCATCGAATCCATCCATCTGG
TTAAGCAGTTCCATCAGCGTGCGCTGGATCTCTCGGTCGGCGGATGTTCC
CTCCGAGAAGCGGCGACCACCGATTGCGTCGATCTCGTCCATGAATATGA
TACACGGCTGGTGGTCACGGGCGTAGGCAAACATCTCCCGGATCAGTCGG
GCACTCTCGCCAATGTACTTGTCCACAATTGCAGAGGAAACGACCTTCAA
GAAGTTGGCGTCCATCTGGGAGGCGATGGCGCGGGCCAGGAGAGTTTTTC
CGGTGCCAGGCGGTCCGTAGAGCAGGCATCCCTTGGGCGGACTTATGCCA
ACGCGTAGGAAAATATCTGGATTTAGTAGCGGCAGTTCAATGACCTCGCG
AAGCTCGCGGATTTGCTGACCAAGTCCACCGATTTCAGCGTAGTTTACGT
TTCCGGGATCTTCATGGGTCATGTTGTACACCAGGGGATCCACTTCCCGC
GGCAAATAACGCATGATGGTGAGAGTGGTCACATCCAGGGCGACCCGTGT
GCCGGGC
BO14250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7257-PA | 1197 | CG7257-RA | 306..1194 | 907..19 | 4220 | 98.9 | Minus |
CG3455-PA | 1173 | Rpt4-RA | 667..848 | 522..341 | 285 | 86.2 | Minus |
CG3455-PA | 1173 | Rpt4-RA | 565..638 | 624..551 | 170 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 498..1386 | 907..19 | 4310 | 99 | Minus |
Rpt4R-RA | 1391 | CG7257-RA | 387..1275 | 907..19 | 4310 | 99 | Minus |
Rpt4-RB | 1465 | CG3455-RB | 427..1309 | 905..23 | 1385 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942790..11943369 | 598..19 | 2810 | 99 | Minus |
3L | 28110227 | 3L | 11942409..11942724 | 907..592 | 1535 | 99.1 | Minus |
X | 23542271 | X | 6290064..6290700 | 269..905 | 1220 | 79.4 | Plus |
X | 23542271 | X | 21317254..21317378 | 362..238 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:28:00 has no hits.
BO14250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:18 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 306..1197 | 18..907 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:55 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 306..1197 | 18..907 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:17:40 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 387..1284 | 12..907 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:50:33 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 387..1284 | 12..907 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:50:33 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942409..11942721 | 595..907 | 99 | -> | Minus |
3L | 11942794..11943378 | 12..594 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:17:40 Download gff for
BO14250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935509..11935821 | 595..907 | 99 | -> | Minus |
arm_3L | 11935894..11936478 | 12..594 | 98 | | Minus |
BO14250.5prime Sequence
912 bp (749 high quality bases) assembled on 2006-05-29
> BO14250.5prime
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGNCATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTTGGCCAGTGAAATGATCATGGCCACCAATCGTCCAGATACACTGGAT
CCGGCGCTGCTG
BO14250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7257-PA | 1197 | CG7257-RA | 1..837 | 17..853 | 3991 | 99 | Plus |
CG7257-PA | 1197 | CG7257-RA | 848..897 | 863..912 | 225 | 98 | Plus |
CG3455-PA | 1173 | Rpt4-RA | 667..797 | 707..837 | 211 | 86.2 | Plus |
CG3455-PA | 1173 | Rpt4-RA | 565..638 | 605..678 | 170 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 193..1089 | 17..912 | 4284 | 98.7 | Plus |
Rpt4R-RA | 1391 | CG7257-RA | 82..978 | 17..912 | 4284 | 98.7 | Plus |
Rpt4-RB | 1465 | CG3455-RB | 263..1016 | 160..912 | 1439 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942104..11942724 | 17..637 | 3075 | 99.7 | Plus |
X | 23542271 | X | 6290111..6290775 | 912..249 | 1269 | 79.7 | Minus |
3L | 28110227 | 3L | 11942790..11943072 | 631..912 | 1204 | 95.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:14:53 has no hits.
BO14250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:19 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 1..897 | 17..912 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:56 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 1..897 | 17..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:58 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 80..978 | 14..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:02 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 80..978 | 14..912 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:02 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942102..11942721 | 14..634 | 99 | -> | Plus |
3L | 11942794..11943072 | 635..912 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:58 Download gff for
BO14250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935202..11935821 | 14..634 | 99 | -> | Plus |
arm_3L | 11935894..11936172 | 635..912 | 96 | | Plus |
BO14250.complete Sequence
1228 bp assembled on 2006-10-11
GenBank Submission: FJ638725
> BO14250.complete
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGCAATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTGGCCAGGTGAAAATGATCATGGCCACCAATCGTCCAGATACACTGGA
TCCGGCGCTGCTGCGTCCTGGACGACTTGATCGCAAATTGGAAATTCCGC
TGCCCAACGAAGTGGCGCGTATGGACATTCTTAAGATTCACGCCGAACCA
CTGAACAAACGCGGCGAAATCGACTATGAGGCGGTGGTTAAGCTCTCCGA
TTTGTTCAATGGTGCCGATCTACGGAACATTTGCACGGAAGCCGGGCTTT
TTGCCCTCCGCTGCGATAGGGAGTTTGTCATTCAAGAAGATTTCATGAAG
GCCGTCCGCAAAATAGCGGACAATAAGAAGCTGGAGTCGCGTCTGGACTA
CAAGCCTATAGCAAGCTTTCTAGACCAT
BO14250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1197 | CG7257-PB | 1..1194 | 17..1210 | 5850 | 99.3 | Plus |
Rpt4R-RA | 1197 | CG7257-PA | 1..1194 | 17..1210 | 5850 | 99.3 | Plus |
Rpt4-RB | 1194 | CG3455-PB | 141..1187 | 160..1206 | 1680 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 193..1386 | 17..1210 | 5850 | 99.3 | Plus |
Rpt4R-RA | 1391 | CG7257-RA | 82..1275 | 17..1210 | 5850 | 99.3 | Plus |
Rpt4-RB | 1465 | CG3455-RB | 263..1309 | 160..1206 | 1680 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942104..11942724 | 17..637 | 3075 | 99.7 | Plus |
3L | 28110227 | 3L | 11942790..11943369 | 631..1210 | 2810 | 99 | Plus |
X | 23542271 | X | 6290064..6290775 | 960..249 | 1400 | 79.8 | Minus |
X | 23542271 | X | 21317254..21317378 | 867..991 | 190 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:21:12 has no hits.
BO14250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:12 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:21 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-RA | 80..1284 | 14..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:51 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 82..1275 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:13 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-RA | 80..1284 | 14..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:53 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 82..1275 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:53 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942104..11942721 | 17..634 | 99 | -> | Plus |
3L | 11942794..11943369 | 635..1212 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:51 Download gff for
BO14250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935204..11935821 | 17..634 | 99 | -> | Plus |
arm_3L | 11935894..11936469 | 635..1212 | 98 | | Plus |
BO14250.pep Sequence
Translation from 16 to 1228
> BO14250.pep
MSAPLANPPTDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYE
KSEDDLKALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEK
LKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQ
IRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQM
DANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGR
RFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLR
PGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGA
DLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPIAS
FLDH
BO14250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-PB | 398 | CG7257-PB | 1..398 | 1..398 | 2032 | 100 | Plus |
Rpt4R-PA | 398 | CG7257-PA | 1..398 | 1..398 | 2032 | 100 | Plus |
Rpt4-PB | 397 | CG3455-PB | 5..397 | 6..398 | 1695 | 82.7 | Plus |
Rpt6-PA | 405 | CG1489-PA | 36..403 | 30..398 | 849 | 46.3 | Plus |
Rpt6R-PA | 399 | CG2241-PA | 31..383 | 30..383 | 822 | 46.9 | Plus |