Clone Sequence Records
BO14251.3prime Sequence
836 bp (706 high quality bases) assembled on 2006-05-29
> BO14251.3prime
ATGGTCTAGAAAGCTTGCCTTCATCAAATTCCTCACAATGTCTACAGGAA
AAGGAAAGACGTAGGACCGGGTGTCATCATTGCAGATGGAGTTCAGTGTT
TGCAAGTACCGTAGCTGCAGGGCTATGGGGTTGGTCTCCATTATGTCGGC
AGCCTCCTTCAGAGCAGTTACCGCATCTCGCTCCCCCTGCGCCGCGGCCA
CCTTGGCCTTGGCCTCACGCATCGCCTCCTGTTCCACAGCCAGGGCGCGC
TTCAGTTGATCAGGCATGAAGATCTCCTTGATCTCGACCCGTTCCACGCG
TATGCCCCAGGGCTCTGTGGAGTTGTACAATATACCCTCTATTTGGTTGG
AGAGGTACTCCTTGGACGAGAGCAAATCCATTAGCTTGTGGGTGCCGGCC
ACGTTACGCAGCGTGGTCATTGCTAGCTTCTCGGTCGCCTCCTCCGGATC
GTATACTTGCAGCATGGCGTCGAATGGGCTCTTGATGCTGTAGTACACCA
CTCCGTCGATGCTGATCGTCACCATGTCACGAGTGAGGATTTCCTGTCTA
TGTAGGTCAAATGACCTGGTACGTATGTCCACAACAGCGAGGTCATCAAT
GCAGGGCACGAGAAAGATGACGCCTGGCCCCCTCGGGGGCTTAGGGCGCA
GGCGACCCAGGCGCAGGATTACCGCTCGCTCGTACTCCGACATTACCCTG
AGACAGCAGAATAGGGACCACGGCAGGCAAAGGACTATCAGAATCATGGA
CAGCACAAACAACGTTTTCTCCGCACAAGTTGGTGGAACATTCTCACTTG
TTTTTACATTACGCTGAGGTAACAGTGATTCATCGT
BO14251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 882 | CG14644-RA | 62..879 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 1034 | CG14644-RA | 130..947 | 836..19 | 4090 | 100 | Minus |
CG14644-RB | 995 | CG14644-RB | 228..908 | 699..19 | 3405 | 100 | Minus |
CG14644-RB | 995 | CG14644-RB | 130..170 | 836..796 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252814 | 281..797 | 2585 | 100 | Plus |
3R | 32079331 | 3R | 4251981..4252242 | 19..280 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 4252874..4252914 | 796..836 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:02:29 has no hits.
BO14251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:20 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 62..882 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:57 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 62..882 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:09 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 130..954 | 11..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:19 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 130..954 | 11..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:19 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4251974..4252242 | 11..280 | 98 | <- | Plus |
3R | 4252298..4252814 | 281..797 | 100 | <- | Plus |
3R | 4252876..4252914 | 798..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:09 Download gff for
BO14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77696..77964 | 11..280 | 98 | <- | Plus |
arm_3R | 78020..78536 | 281..797 | 100 | <- | Plus |
arm_3R | 78598..78636 | 798..836 | 100 | | Plus |
BO14251.5prime Sequence
829 bp (754 high quality bases) assembled on 2006-05-29
> BO14251.5prime
GAAGTTATCAGTCGACATGGACAATAATCCGACGACCCCTGCTTTGCTTG
CTCAGAGCTCCTCGGTAAACGTGTTCCACGATGAATCACTGTTACCTCAG
CGTAATGTAAAAACAAGTGAGAATGTTCCACCAACTTGTGCGGAGAAAAC
GTTGTTTGTGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCC
TATTCTGCTGTCTCAGGGTAATGTCGGAGTACGAGCGAGCGGTAATCCTG
CGCCTGGGTCGCCTGCGCCCTAAGCCCCCGAGGGGGCCAGGCGTCATCTT
TCTCGTGCCCTGCATTGATGACCTCGCTGTTGTGGACATACGTACCAGGT
CATTTGACCTACATAGACAGGAAATCCTCACTCGTGACATGGTGACGATC
AGCATCGACGGAGTGGTGTACTACAGCATCAAGAGCCCATTCGACGCCAT
GCTGCAAGTATACGATCCGGAGGAGGCGACCGAGAAGCTAGCAATGACCA
CGCTGCGTAACGTGGCCGGCACCCACAAGCTAATGGATTTGCTCTCGTCC
AAGGAGTACCTCTCCAACCAAATAGAGGGTATATTGTACAACTCCACAGA
GCCCTGGGGCATACGCGTGGAACGGGTCGAGATCAAGGAGATCTTCATGC
CTGATCAACTGAAGCGCGCCCTGGCTGTGGAACAGGAGGCGATGCGTGAG
GCCAAGGCCAAGGTGGCCGCGGCGCAGGGGGAGCGAGATGCGGTAACTGC
TCTGAAAGAGGCTGCCGACATAATGGAGACCAACCCCATAGCCCTGCAGC
TACGGTACTTGCAAACACTGAACTCCATC
BO14251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 882 | CG14644-RA | 1..813 | 17..829 | 4040 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 1034 | CG14644-RA | 69..881 | 17..829 | 4050 | 99.9 | Plus |
CG14644-RB | 995 | CG14644-RB | 228..842 | 215..829 | 3060 | 99.8 | Plus |
CG14644-RB | 995 | CG14644-RB | 69..170 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252814 | 633..117 | 2585 | 100 | Minus |
3R | 32079331 | 3R | 4252047..4252242 | 829..634 | 965 | 99.5 | Minus |
3R | 32079331 | 3R | 4252874..4252975 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:59:57 has no hits.
BO14251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:21 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:59 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:57 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..881 | 11..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:54 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..881 | 11..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:54 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4252047..4252242 | 634..829 | 99 | <- | Minus |
3R | 4252298..4252814 | 117..633 | 100 | <- | Minus |
3R | 4252876..4252978 | 11..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:57 Download gff for
BO14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77769..77964 | 634..829 | 99 | <- | Minus |
arm_3R | 78020..78536 | 117..633 | 100 | <- | Minus |
arm_3R | 78598..78700 | 11..116 | 97 | | Minus |
BO14251.complete Sequence
913 bp assembled on 2006-10-11
GenBank Submission: FJ633056
> BO14251.complete
GAAGTTATCAGTCGACATGGACAATAATCCGACGACCCCTGCTTTGCTTG
CTCAGAGCTCCTCGGTAAACGTGTTCCACGATGAATCACTGTTACCTCAG
CGTAATGTAAAAACAAGTGAGAATGTTCCACCAACTTGTGCGGAGAAAAC
GTTGTTTGTGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCC
TATTCTGCTGTCTCAGGGTAATGTCGGAGTACGAGCGAGCGGTAATCCTG
CGCCTGGGTCGCCTGCGCCCTAAGCCCCCGAGGGGGCCAGGCGTCATCTT
TCTCGTGCCCTGCATTGATGACCTCGCTGTTGTGGACATACGTACCAGGT
CATTTGACCTACATAGACAGGAAATCCTCACTCGTGACATGGTGACGATC
AGCATCGACGGAGTGGTGTACTACAGCATCAAGAGCCCATTCGACGCCAT
GCTGCAAGTATACGATCCGGAGGAGGCGACCGAGAAGCTAGCAATGACCA
CGCTGCGTAACGTGGCCGGCACCCACAAGCTAATGGATTTGCTCTCGTCC
AAGGAGTACCTCTCCAACCAAATAGAGGGTATATTGTACAACTCCACAGA
GCCCTGGGGCATACGCGTGGAACGGGTCGAGATCAAGGAGATCTTCATGC
CTGATCAACTGAAGCGCGCCCTGGCTGTGGAACAGGAGGCGATGCGTGAG
GCCAAGGCCAAGGTGGCCGCGGCGCAGGGGGAGCGAGATGCGGTAACTGC
TCTGAAGGAGGCTGCCGACATAATGGAGACCAACCCCATAGCCCTGCAGC
TACGGTACTTGCAAACACTGAACTCCATCTGCAATGATGACACCCGGTCC
TACGTCTTTCCTTTTCCTGTAGACATTGTGAGGAATTTGATGAAGGCAAG
CTTTCTAGACCAT
BO14251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 882 | CG14644-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG14644-RB | 678 | CG14644-PB | 1..675 | 221..895 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 1034 | CG14644-RA | 69..947 | 17..895 | 4395 | 100 | Plus |
CG14644-RB | 995 | CG14644-RB | 228..908 | 215..895 | 3405 | 100 | Plus |
CG14644-RB | 995 | CG14644-RB | 69..170 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252814 | 633..117 | 2585 | 100 | Minus |
3R | 32079331 | 3R | 4251981..4252242 | 895..634 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 4252874..4252975 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:07 has no hits.
BO14251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:36 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 1..882 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:54 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..954 | 11..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:00 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 69..947 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:36 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..954 | 11..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:28 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 69..947 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:28 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4252876..4252975 | 17..116 | 100 | | Minus |
3R | 4251979..4252242 | 634..897 | 99 | <- | Minus |
3R | 4252298..4252814 | 117..633 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:00 Download gff for
BO14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77701..77964 | 634..897 | 99 | <- | Minus |
arm_3R | 78020..78536 | 117..633 | 100 | <- | Minus |
arm_3R | 78598..78697 | 17..116 | 100 | | Minus |
BO14251.pep Sequence
Translation from 16 to 913
> BO14251.pep
MDNNPTTPALLAQSSSVNVFHDESLLPQRNVKTSENVPPTCAEKTLFVLS
MILIVLCLPWSLFCCLRVMSEYERAVILRLGRLRPKPPRGPGVIFLVPCI
DDLAVVDIRTRSFDLHRQEILTRDMVTISIDGVVYYSIKSPFDAMLQVYD
PEEATEKLAMTTLRNVAGTHKLMDLLSSKEYLSNQIEGILYNSTEPWGIR
VERVEIKEIFMPDQLKRALAVEQEAMREAKAKVAAAQGERDAVTALKEAA
DIMETNPIALQLRYLQTLNSICNDDTRSYVFPFPVDIVRNLMKASFLDH
BO14251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 293 | CG14644-PA | 1..293 | 1..293 | 1490 | 100 | Plus |
CG14644-PB | 225 | CG14644-PB | 1..225 | 69..293 | 1133 | 100 | Plus |
CG33253-PA | 367 | CG33253-PA | 33..315 | 5..288 | 692 | 48.2 | Plus |
CG33253-PB | 414 | CG33253-PB | 33..315 | 5..288 | 692 | 48.2 | Plus |
CG33253-PC | 302 | CG33253-PC | 3..250 | 41..288 | 658 | 50.4 | Plus |