Clone Sequence Records
BO14252.3prime Sequence
882 bp (753 high quality bases) assembled on 2006-05-29
> BO14252.3prime
ATGGTCTAGAAAGCTTGCGTTAAGTGATTGCTCATCGTCGACTTTAAGGA
ACAGCGAAAACAGAAAGGCAATTGACATCAGTGAGCAAAGCCAGAGAAAC
GGGGCCAAGCAGCTGAGTTGCATGAAAACCGGCAGTAACATATTGCCACT
TACAGATCCAAGTCTCCCAAAGGTCATGATCAGCAGTAAAACCATCGTCC
TCATTAGGGTGGGAAATATCACCACAGACATTCCAATGATTGTAGTGGCA
CAAATGCCCATCATGGTCAGGTAAACGGCGGAAACCATCATCGTTACCAG
CGAAGTCTTCACAAAGTACAGGTCAGTATGTGATTCGAGACCACTTGGAA
TCGCATTAAGGGAAAAATGATCAGAAAACCGACCAGACCAATTCCAGCTT
AGATTCTGGAAGCCCATAACAAGCGATCTCCTACCCACTAGAGCGCACTC
CACCCTCTTCTCCTCCTCATCCATGGATTTCGCATTTGCATTGTGTTCCA
AAACGGCGCACATGCTCGTGTCATTCGCACCCAAAGTGTCCATGGCGTTC
ATCGTGGCAAAGATCTGTGGCAGCCACAGACGCACGGAGTTGACACACAT
AATCTGGCAGAAATGCAGGCAATAAACCTGCAGTGAAATGGCCAAGTAGG
GACTGGAGAACATAGGCTTCAGCTGCTTGAATCCATCGATGAACTTGCTC
TGGGCCCGACTAAATCTTTCCTGGAGTGTTGATGGCCGACCAGTACCATC
AAGATCATCAGACCGATCGGGCGTGGGATCGGTGAGATGTTTTATCGGAT
AGCTCTCTCTGCTCTTCCGCTTGTTCAGCTTGTAGATGCGCTAGCAGGAG
TCCAAAGCCTTTTTATAATTTCCCTGAGACAT
BO14252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-PB | 1533 | CG14691-RB | 707..1530 | 842..19 | 4095 | 99.8 | Minus |
CG14691-PA | 1569 | CG14691-RA | 707..1110 | 842..439 | 2020 | 100 | Minus |
CG14691-PA | 1569 | CG14691-RA | 1263..1566 | 322..19 | 1495 | 99.6 | Minus |
CG14691-PA | 1569 | CG14691-RA | 1149..1225 | 399..323 | 385 | 100 | Minus |
CG14691-PB | 1533 | CG14691-RB | 667..703 | 882..846 | 185 | 100 | Minus |
CG14691-PA | 1569 | CG14691-RA | 667..703 | 882..846 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-RB | 1672 | CG14691-RB | 739..1602 | 882..19 | 4260 | 99.7 | Minus |
CG14691-RC | 1675 | CG14691-RC | 739..1605 | 882..19 | 3910 | 97.1 | Minus |
CG14691-RA | 1708 | CG14691-RA | 739..1297 | 882..323 | 2355 | 95.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10754420..10754620 | 596..796 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 10754169..10754367 | 398..596 | 995 | 100 | Plus |
3R | 32079331 | 3R | 10753514..10753647 | 68..201 | 640 | 98.5 | Plus |
3R | 32079331 | 3R | 10753698..10753821 | 199..322 | 620 | 100 | Plus |
3R | 32079331 | 3R | 10754688..10754774 | 796..882 | 390 | 96.6 | Plus |
3R | 32079331 | 3R | 10754033..10754109 | 323..399 | 385 | 100 | Plus |
3R | 32079331 | 3R | 10753401..10753453 | 19..71 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:06:40 has no hits.
BO14252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:22 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-PB | 667..1533 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:00 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-PB | 667..1533 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:10:45 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 739..1609 | 11..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:13 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 739..1609 | 11..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:13 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10754420..10754619 | 596..795 | 100 | <- | Plus |
3R | 10754688..10754774 | 796..882 | 97 | | Plus |
3R | 10753518..10753645 | 72..199 | 99 | <- | Plus |
3R | 10753699..10753821 | 200..322 | 100 | <- | Plus |
3R | 10754033..10754107 | 323..397 | 100 | <- | Plus |
3R | 10754169..10754366 | 398..595 | 100 | <- | Plus |
3R | 10753394..10753453 | 11..71 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:10:45 Download gff for
BO14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6579116..6579175 | 11..71 | 95 | <- | Plus |
arm_3R | 6579240..6579367 | 72..199 | 99 | <- | Plus |
arm_3R | 6579421..6579543 | 200..322 | 100 | <- | Plus |
arm_3R | 6579755..6579829 | 323..397 | 100 | <- | Plus |
arm_3R | 6579891..6580088 | 398..595 | 100 | <- | Plus |
arm_3R | 6580142..6580341 | 596..795 | 100 | <- | Plus |
arm_3R | 6580410..6580496 | 796..882 | 97 | | Plus |
BO14252.5prime Sequence
844 bp (825 high quality bases) assembled on 2006-05-29
> BO14252.5prime
GAAGTTATCAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGC
CTGCTGACTTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAAC
GTGTTCATCCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTC
GGCCTCGGCGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACC
TGAGCATCGTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATG
ATCATCTCGGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCG
ACCCGTCCTCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCG
CTTCGCTCAGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGAT
GGTTTAATCATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGA
GTTCCATGGCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGT
GTGTTTCCATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTA
CCGGTGCCCATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCA
GGTCTTCCTGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGC
ACATCTTCCTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTAT
AAAAAGGCTTTGGACTCCTTGCAGCGCATCTACAAGCTGAACAAGCGGAA
GAGCAGAGAGAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATC
GGTCTGATGATCTTGATGGTACTGGTCGGCCATCACCACTCCAG
BO14252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-PB | 1533 | CG14691-RB | 1..828 | 17..844 | 4115 | 99.8 | Plus |
CG14691-PA | 1569 | CG14691-RA | 1..828 | 17..844 | 4115 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-RC | 1675 | CG14691-RC | 73..900 | 17..844 | 4125 | 99.9 | Plus |
CG14691-RA | 1708 | CG14691-RA | 73..900 | 17..844 | 4125 | 99.9 | Plus |
CG14691-RB | 1672 | CG14691-RB | 73..900 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10755171..10755562 | 408..17 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 10754688..10754869 | 769..588 | 910 | 100 | Minus |
3R | 32079331 | 3R | 10754928..10755106 | 587..409 | 895 | 100 | Minus |
3R | 32079331 | 3R | 10754545..10754620 | 844..769 | 365 | 98.7 | Minus |
X | 23542271 | X | 951575..951674 | 273..174 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:36:24 has no hits.
BO14252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:23 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-PB | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:01 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:30 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 70..900 | 14..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:51:51 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 70..900 | 14..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:51:51 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10754928..10755106 | 409..587 | 100 | <- | Minus |
3R | 10754545..10754619 | 770..844 | 98 | <- | Minus |
3R | 10754688..10754869 | 588..769 | 100 | <- | Minus |
3R | 10755171..10755565 | 14..408 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:30 Download gff for
BO14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6580267..6580341 | 770..844 | 98 | <- | Minus |
arm_3R | 6580410..6580591 | 588..769 | 100 | <- | Minus |
arm_3R | 6580650..6580828 | 409..587 | 100 | <- | Minus |
arm_3R | 6580893..6581287 | 14..408 | 99 | | Minus |
BO14252.complete Sequence
1564 bp assembled on 2006-10-11
GenBank Submission: FJ633057
> BO14252.complete
GAAGTTATCAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGC
CTGCTGACTTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAAC
GTGTTCATCCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTC
GGCCTCGGCGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACC
TGAGCATCGTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATG
ATCATCTCGGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCG
ACCCGTCCTCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCG
CTTCGCTCAGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGAT
GGTTTAATCATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGA
GTTCCATGGCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGT
GTGTTTCCATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTA
CCGGTGCCCATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCA
GGTCTTCCTGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGC
ACATCTTCCTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTAT
AAAAAGGCTTTGGACTCCTTGCAGCGCATCTACAAGCTGAACAAGCGGAA
GAGCAGAGAGAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATC
GGTCTGATGATCTTGATGGTACTGGTCGGCCATCAACACTCCAGGAAAGA
TTTAGTCGGGCCCAGAGCAAGTTCATCGATGGATTCAAGCAGCTGAAGCC
TATGTTCTCCAGTCCCTACTTGGCCATTTCACTGCAGGTTTATTGCCTGC
ATTTCTGCCAGATTATGTGTGTCAACTCCGTGCGTCTGTGGCTGCCACAG
ATCTTTGCCACGATGAACGCCATGGACACTTTGGGTGCGAATGACACGAG
CATGTGCGCCGTTTTGGAACACAATGCAAATGCGAAATCCATGGATGAGG
AGGAGAAGAGGGTGGAGTGCGCTCTAGTGGGTAGGAGATCGCTTGTTATG
GGCTTCCAGAATCTAAGCTGGAATTGGTCTGGTCGGTTTTCTGATCATTT
TTCCCTTAATGCGATTCCAAGTGGTCTCGAATCACATACTGACCTGTACT
TTGTGAAGACTTCGCTGGTAACGATGATGGTTTCCGCCGTTTACCTGACC
ATGATGGGCATTTGTGCCACTACAATCATTGGAATGTCTGTGGTGATATT
TCCCACCCTAATGAGGACGATGGTTTTACTGCTGATCATGACCTTTGGGA
GACTTGGATCTGTAAGTGGCAATATGTTACTGCCGGTTTTCATGCAACTC
AGCTGCTTGGCCCCGTTTCTCTGGCTTTGCTCACTGATGTCAATTGCCTT
TCTGTTTTCGCTGTTCCTTAAAGTCGACGATGAGCAATCACTTAACGCAA
GCTTTCTAGACCAT
BO14252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-RB | 1533 | CG14691-PB | 1..1530 | 17..1546 | 7635 | 99.9 | Plus |
CG14691-RA | 1569 | CG14691-PA | 1..1225 | 17..1242 | 5675 | 97.9 | Plus |
CG14691-RC | 1122 | CG14691-PC | 1..1114 | 17..1130 | 5570 | 100 | Plus |
CG14691-RA | 1569 | CG14691-PA | 1263..1566 | 1243..1546 | 1505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-RB | 1672 | CG14691-RB | 73..1602 | 17..1546 | 7635 | 99.9 | Plus |
CG14691-RC | 1675 | CG14691-RC | 73..1605 | 17..1546 | 7235 | 98.4 | Plus |
CG14691-RA | 1708 | CG14691-RA | 73..1297 | 17..1242 | 5675 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10755171..10755562 | 408..17 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 10754420..10754620 | 969..769 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 10754169..10754367 | 1167..969 | 995 | 100 | Minus |
3R | 32079331 | 3R | 10754688..10754869 | 769..588 | 910 | 100 | Minus |
3R | 32079331 | 3R | 10754928..10755106 | 587..409 | 895 | 100 | Minus |
3R | 32079331 | 3R | 10753514..10753647 | 1497..1364 | 640 | 98.5 | Minus |
3R | 32079331 | 3R | 10753698..10753821 | 1366..1243 | 620 | 100 | Minus |
3R | 32079331 | 3R | 10754033..10754109 | 1242..1166 | 385 | 100 | Minus |
3R | 32079331 | 3R | 10753401..10753453 | 1546..1494 | 265 | 100 | Minus |
X | 23542271 | X | 951575..951674 | 273..174 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:12 has no hits.
BO14252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:40 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 1..1533 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:56 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 70..1609 | 14..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:09 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 73..1602 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:40 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 70..1609 | 14..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:48 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14691-RB | 73..1602 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:48 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10754688..10754869 | 588..769 | 100 | <- | Minus |
3R | 10754928..10755106 | 409..587 | 100 | <- | Minus |
3R | 10755171..10755562 | 17..408 | 100 | | Minus |
3R | 10753399..10753453 | 1494..1548 | 96 | <- | Minus |
3R | 10753518..10753645 | 1366..1493 | 99 | <- | Minus |
3R | 10753699..10753821 | 1243..1365 | 100 | <- | Minus |
3R | 10754033..10754107 | 1168..1242 | 100 | <- | Minus |
3R | 10754169..10754366 | 970..1167 | 100 | <- | Minus |
3R | 10754420..10754619 | 770..969 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:09 Download gff for
BO14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6580410..6580591 | 588..769 | 100 | <- | Minus |
arm_3R | 6579121..6579175 | 1494..1548 | 96 | <- | Minus |
arm_3R | 6579240..6579367 | 1366..1493 | 99 | <- | Minus |
arm_3R | 6579421..6579543 | 1243..1365 | 100 | <- | Minus |
arm_3R | 6579755..6579829 | 1168..1242 | 100 | <- | Minus |
arm_3R | 6579891..6580088 | 970..1167 | 100 | <- | Minus |
arm_3R | 6580142..6580341 | 770..969 | 100 | <- | Minus |
arm_3R | 6580650..6580828 | 409..587 | 100 | <- | Minus |
arm_3R | 6580893..6581284 | 17..408 | 100 | | Minus |
BO14252.pep Sequence
Translation from 16 to 1564
> BO14252.pep
MADRAKDNTDEPADFETAIAECGFGLFNVFILCSAVPCLTAMVFSASALS
YVMPSAECDLDLSIVDKGMLHAVTYAGMIISAVPWGFIADTIGRRPVLIS
GGWLDGFFVLCASLSQNTAQLMAFKFFDGLIICGPFAVVVSYLAEFHGKK
HRPYIMLFVGLCVSIGSMILPLLSYLLLPVPILFTVSSMKFRTWQVFLAV
SSAPSLLSGFLHIFLPESPKFLMSQGNYKKALDSLQRIYKLNKRKSRESY
PIKHLTDPTPDRSDDLDGTGRPSTLQERFSRAQSKFIDGFKQLKPMFSSP
YLAISLQVYCLHFCQIMCVNSVRLWLPQIFATMNAMDTLGANDTSMCAVL
EHNANAKSMDEEEKRVECALVGRRSLVMGFQNLSWNWSGRFSDHFSLNAI
PSGLESHTDLYFVKTSLVTMMVSAVYLTMMGICATTIIGMSVVIFPTLMR
TMVLLLIMTFGRLGSVSGNMLLPVFMQLSCLAPFLWLCSLMSIAFLFSLF
LKVDDEQSLNASFLDH
BO14252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14691-PB | 510 | CG14691-PB | 1..510 | 1..510 | 2638 | 100 | Plus |
CG14691-PA | 522 | CG14691-PA | 1..522 | 1..510 | 2377 | 90.5 | Plus |
CG14691-PC | 373 | CG14691-PC | 1..371 | 1..371 | 1929 | 100 | Plus |
CG3690-PB | 558 | CG3690-PB | 30..557 | 13..509 | 957 | 40.1 | Plus |
CG3690-PA | 558 | CG3690-PA | 30..557 | 13..509 | 957 | 40.1 | Plus |