Clone BO14252 Report

Search the DGRC for BO14252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG14691-RB
Protein status:BO14252.pep: validated full length
Sequenced Size:1564

Clone Sequence Records

BO14252.3prime Sequence

882 bp (753 high quality bases) assembled on 2006-05-29

> BO14252.3prime
ATGGTCTAGAAAGCTTGCGTTAAGTGATTGCTCATCGTCGACTTTAAGGA
ACAGCGAAAACAGAAAGGCAATTGACATCAGTGAGCAAAGCCAGAGAAAC
GGGGCCAAGCAGCTGAGTTGCATGAAAACCGGCAGTAACATATTGCCACT
TACAGATCCAAGTCTCCCAAAGGTCATGATCAGCAGTAAAACCATCGTCC
TCATTAGGGTGGGAAATATCACCACAGACATTCCAATGATTGTAGTGGCA
CAAATGCCCATCATGGTCAGGTAAACGGCGGAAACCATCATCGTTACCAG
CGAAGTCTTCACAAAGTACAGGTCAGTATGTGATTCGAGACCACTTGGAA
TCGCATTAAGGGAAAAATGATCAGAAAACCGACCAGACCAATTCCAGCTT
AGATTCTGGAAGCCCATAACAAGCGATCTCCTACCCACTAGAGCGCACTC
CACCCTCTTCTCCTCCTCATCCATGGATTTCGCATTTGCATTGTGTTCCA
AAACGGCGCACATGCTCGTGTCATTCGCACCCAAAGTGTCCATGGCGTTC
ATCGTGGCAAAGATCTGTGGCAGCCACAGACGCACGGAGTTGACACACAT
AATCTGGCAGAAATGCAGGCAATAAACCTGCAGTGAAATGGCCAAGTAGG
GACTGGAGAACATAGGCTTCAGCTGCTTGAATCCATCGATGAACTTGCTC
TGGGCCCGACTAAATCTTTCCTGGAGTGTTGATGGCCGACCAGTACCATC
AAGATCATCAGACCGATCGGGCGTGGGATCGGTGAGATGTTTTATCGGAT
AGCTCTCTCTGCTCTTCCGCTTGTTCAGCTTGTAGATGCGCTAGCAGGAG
TCCAAAGCCTTTTTATAATTTCCCTGAGACAT

BO14252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-PB 1533 CG14691-RB 707..1530 842..19 4095 99.8 Minus
CG14691-PA 1569 CG14691-RA 707..1110 842..439 2020 100 Minus
CG14691-PA 1569 CG14691-RA 1263..1566 322..19 1495 99.6 Minus
CG14691-PA 1569 CG14691-RA 1149..1225 399..323 385 100 Minus
CG14691-PB 1533 CG14691-RB 667..703 882..846 185 100 Minus
CG14691-PA 1569 CG14691-RA 667..703 882..846 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-RB 1672 CG14691-RB 739..1602 882..19 4260 99.7 Minus
CG14691-RC 1675 CG14691-RC 739..1605 882..19 3910 97.1 Minus
CG14691-RA 1708 CG14691-RA 739..1297 882..323 2355 95.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10754420..10754620 596..796 1005 100 Plus
3R 32079331 3R 10754169..10754367 398..596 995 100 Plus
3R 32079331 3R 10753514..10753647 68..201 640 98.5 Plus
3R 32079331 3R 10753698..10753821 199..322 620 100 Plus
3R 32079331 3R 10754688..10754774 796..882 390 96.6 Plus
3R 32079331 3R 10754033..10754109 323..399 385 100 Plus
3R 32079331 3R 10753401..10753453 19..71 265 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:06:40 has no hits.

BO14252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:22 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-PB 667..1533 15..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:00 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-PB 667..1533 15..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:10:45 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 739..1609 11..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:13 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 739..1609 11..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:13 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10754420..10754619 596..795 100 <- Plus
3R 10754688..10754774 796..882 97   Plus
3R 10753518..10753645 72..199 99 <- Plus
3R 10753699..10753821 200..322 100 <- Plus
3R 10754033..10754107 323..397 100 <- Plus
3R 10754169..10754366 398..595 100 <- Plus
3R 10753394..10753453 11..71 95 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:10:45 Download gff for BO14252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6579116..6579175 11..71 95 <- Plus
arm_3R 6579240..6579367 72..199 99 <- Plus
arm_3R 6579421..6579543 200..322 100 <- Plus
arm_3R 6579755..6579829 323..397 100 <- Plus
arm_3R 6579891..6580088 398..595 100 <- Plus
arm_3R 6580142..6580341 596..795 100 <- Plus
arm_3R 6580410..6580496 796..882 97   Plus

BO14252.5prime Sequence

844 bp (825 high quality bases) assembled on 2006-05-29

> BO14252.5prime
GAAGTTATCAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGC
CTGCTGACTTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAAC
GTGTTCATCCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTC
GGCCTCGGCGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACC
TGAGCATCGTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATG
ATCATCTCGGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCG
ACCCGTCCTCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCG
CTTCGCTCAGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGAT
GGTTTAATCATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGA
GTTCCATGGCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGT
GTGTTTCCATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTA
CCGGTGCCCATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCA
GGTCTTCCTGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGC
ACATCTTCCTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTAT
AAAAAGGCTTTGGACTCCTTGCAGCGCATCTACAAGCTGAACAAGCGGAA
GAGCAGAGAGAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATC
GGTCTGATGATCTTGATGGTACTGGTCGGCCATCACCACTCCAG

BO14252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-PB 1533 CG14691-RB 1..828 17..844 4115 99.8 Plus
CG14691-PA 1569 CG14691-RA 1..828 17..844 4115 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-RC 1675 CG14691-RC 73..900 17..844 4125 99.9 Plus
CG14691-RA 1708 CG14691-RA 73..900 17..844 4125 99.9 Plus
CG14691-RB 1672 CG14691-RB 73..900 17..844 4125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10755171..10755562 408..17 1960 100 Minus
3R 32079331 3R 10754688..10754869 769..588 910 100 Minus
3R 32079331 3R 10754928..10755106 587..409 895 100 Minus
3R 32079331 3R 10754545..10754620 844..769 365 98.7 Minus
X 23542271 X 951575..951674 273..174 245 83 Minus
Blast to na_te.dros performed on 2015-02-13 07:36:24 has no hits.

BO14252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:23 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-PB 1..828 17..844 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:01 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:30 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 70..900 14..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:51:51 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 70..900 14..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:51:51 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10754928..10755106 409..587 100 <- Minus
3R 10754545..10754619 770..844 98 <- Minus
3R 10754688..10754869 588..769 100 <- Minus
3R 10755171..10755565 14..408 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:30 Download gff for BO14252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6580267..6580341 770..844 98 <- Minus
arm_3R 6580410..6580591 588..769 100 <- Minus
arm_3R 6580650..6580828 409..587 100 <- Minus
arm_3R 6580893..6581287 14..408 99   Minus

BO14252.complete Sequence

1564 bp assembled on 2006-10-11

GenBank Submission: FJ633057

> BO14252.complete
GAAGTTATCAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGC
CTGCTGACTTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAAC
GTGTTCATCCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTC
GGCCTCGGCGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACC
TGAGCATCGTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATG
ATCATCTCGGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCG
ACCCGTCCTCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCG
CTTCGCTCAGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGAT
GGTTTAATCATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGA
GTTCCATGGCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGT
GTGTTTCCATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTA
CCGGTGCCCATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCA
GGTCTTCCTGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGC
ACATCTTCCTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTAT
AAAAAGGCTTTGGACTCCTTGCAGCGCATCTACAAGCTGAACAAGCGGAA
GAGCAGAGAGAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATC
GGTCTGATGATCTTGATGGTACTGGTCGGCCATCAACACTCCAGGAAAGA
TTTAGTCGGGCCCAGAGCAAGTTCATCGATGGATTCAAGCAGCTGAAGCC
TATGTTCTCCAGTCCCTACTTGGCCATTTCACTGCAGGTTTATTGCCTGC
ATTTCTGCCAGATTATGTGTGTCAACTCCGTGCGTCTGTGGCTGCCACAG
ATCTTTGCCACGATGAACGCCATGGACACTTTGGGTGCGAATGACACGAG
CATGTGCGCCGTTTTGGAACACAATGCAAATGCGAAATCCATGGATGAGG
AGGAGAAGAGGGTGGAGTGCGCTCTAGTGGGTAGGAGATCGCTTGTTATG
GGCTTCCAGAATCTAAGCTGGAATTGGTCTGGTCGGTTTTCTGATCATTT
TTCCCTTAATGCGATTCCAAGTGGTCTCGAATCACATACTGACCTGTACT
TTGTGAAGACTTCGCTGGTAACGATGATGGTTTCCGCCGTTTACCTGACC
ATGATGGGCATTTGTGCCACTACAATCATTGGAATGTCTGTGGTGATATT
TCCCACCCTAATGAGGACGATGGTTTTACTGCTGATCATGACCTTTGGGA
GACTTGGATCTGTAAGTGGCAATATGTTACTGCCGGTTTTCATGCAACTC
AGCTGCTTGGCCCCGTTTCTCTGGCTTTGCTCACTGATGTCAATTGCCTT
TCTGTTTTCGCTGTTCCTTAAAGTCGACGATGAGCAATCACTTAACGCAA
GCTTTCTAGACCAT

BO14252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-RB 1533 CG14691-PB 1..1530 17..1546 7635 99.9 Plus
CG14691-RA 1569 CG14691-PA 1..1225 17..1242 5675 97.9 Plus
CG14691-RC 1122 CG14691-PC 1..1114 17..1130 5570 100 Plus
CG14691-RA 1569 CG14691-PA 1263..1566 1243..1546 1505 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-RB 1672 CG14691-RB 73..1602 17..1546 7635 99.9 Plus
CG14691-RC 1675 CG14691-RC 73..1605 17..1546 7235 98.4 Plus
CG14691-RA 1708 CG14691-RA 73..1297 17..1242 5675 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10755171..10755562 408..17 1960 100 Minus
3R 32079331 3R 10754420..10754620 969..769 1005 100 Minus
3R 32079331 3R 10754169..10754367 1167..969 995 100 Minus
3R 32079331 3R 10754688..10754869 769..588 910 100 Minus
3R 32079331 3R 10754928..10755106 587..409 895 100 Minus
3R 32079331 3R 10753514..10753647 1497..1364 640 98.5 Minus
3R 32079331 3R 10753698..10753821 1366..1243 620 100 Minus
3R 32079331 3R 10754033..10754109 1242..1166 385 100 Minus
3R 32079331 3R 10753401..10753453 1546..1494 265 100 Minus
X 23542271 X 951575..951674 273..174 245 83 Minus
Blast to na_te.dros performed on 2014-11-28 01:19:12 has no hits.

BO14252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:40 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 1..1533 17..1550 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:56 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 70..1609 14..1554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:09 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 73..1602 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:40 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 70..1609 14..1554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:48 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG14691-RB 73..1602 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:48 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10754688..10754869 588..769 100 <- Minus
3R 10754928..10755106 409..587 100 <- Minus
3R 10755171..10755562 17..408 100   Minus
3R 10753399..10753453 1494..1548 96 <- Minus
3R 10753518..10753645 1366..1493 99 <- Minus
3R 10753699..10753821 1243..1365 100 <- Minus
3R 10754033..10754107 1168..1242 100 <- Minus
3R 10754169..10754366 970..1167 100 <- Minus
3R 10754420..10754619 770..969 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:09 Download gff for BO14252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6580410..6580591 588..769 100 <- Minus
arm_3R 6579121..6579175 1494..1548 96 <- Minus
arm_3R 6579240..6579367 1366..1493 99 <- Minus
arm_3R 6579421..6579543 1243..1365 100 <- Minus
arm_3R 6579755..6579829 1168..1242 100 <- Minus
arm_3R 6579891..6580088 970..1167 100 <- Minus
arm_3R 6580142..6580341 770..969 100 <- Minus
arm_3R 6580650..6580828 409..587 100 <- Minus
arm_3R 6580893..6581284 17..408 100   Minus

BO14252.pep Sequence

Translation from 16 to 1564

> BO14252.pep
MADRAKDNTDEPADFETAIAECGFGLFNVFILCSAVPCLTAMVFSASALS
YVMPSAECDLDLSIVDKGMLHAVTYAGMIISAVPWGFIADTIGRRPVLIS
GGWLDGFFVLCASLSQNTAQLMAFKFFDGLIICGPFAVVVSYLAEFHGKK
HRPYIMLFVGLCVSIGSMILPLLSYLLLPVPILFTVSSMKFRTWQVFLAV
SSAPSLLSGFLHIFLPESPKFLMSQGNYKKALDSLQRIYKLNKRKSRESY
PIKHLTDPTPDRSDDLDGTGRPSTLQERFSRAQSKFIDGFKQLKPMFSSP
YLAISLQVYCLHFCQIMCVNSVRLWLPQIFATMNAMDTLGANDTSMCAVL
EHNANAKSMDEEEKRVECALVGRRSLVMGFQNLSWNWSGRFSDHFSLNAI
PSGLESHTDLYFVKTSLVTMMVSAVYLTMMGICATTIIGMSVVIFPTLMR
TMVLLLIMTFGRLGSVSGNMLLPVFMQLSCLAPFLWLCSLMSIAFLFSLF
LKVDDEQSLNASFLDH

BO14252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14691-PB 510 CG14691-PB 1..510 1..510 2638 100 Plus
CG14691-PA 522 CG14691-PA 1..522 1..510 2377 90.5 Plus
CG14691-PC 373 CG14691-PC 1..371 1..371 1929 100 Plus
CG3690-PB 558 CG3690-PB 30..557 13..509 957 40.1 Plus
CG3690-PA 558 CG3690-PA 30..557 13..509 957 40.1 Plus