Clone Sequence Records
BO14254.3prime Sequence
880 bp (862 high quality bases) assembled on 2006-05-29
> BO14254.3prime
ATGGTCTAGAAAGCTTGCATCATTTAAAAGTGCCGCAAATGAGGTGGACA
GCTTCGCCTTGCAGAAGGGACACTGGCCGAAGGAGACCTCCAGAAAGGTC
TTGCCATCCATCAGAGTCTTAAACCACTCCTCCAAACAGACGGCATGGCA
CTTTAGCACACATTTGGCATTGTCGCAGGAGACGAGGGGCACCTCGCCAC
CATCCAGGCGATAGGCAAAGCAAATGTTACAGCGCAGCTCTTCGTTGTCC
TCTTCATCCAGCTTGGGTCCATCCGACCAGTCTGGCATGGGAAAGTAGCA
CAAGTCGAACATTCGGAGTAGGTTCTTGTGAATGTTCATTTCGGAGTCCC
AGTTACTTAGACCATCGCTGAGAACGTGGCGCAGGCGGGCCACCTCTTCC
GTGGGCCCAATGATCTTTAGCGACATGGATGCAATGCAGGCAAAGGGATC
CGCGATGGTCAGCTTCAAGTAGACGCGATCCTTGAGAGGGAACAGTCGTG
TTTTGTGTTTGCTGCTGATGGGCGATGGTTGCAGCACATGACAAAGCTCG
TCGATATCCATGAAGTTGTCGTAGAAGGGACGCAGATCCTCGAGAAGCTT
GCGAAAGAGGTTTAGGGCCTCCTCTAGGTTTCCAGCACTCTTGGTCAGCA
TTTCACCCAGCGATACGCAGTCGGGCAAACTGTGATCAAGCAAGAGAAGA
GACGGGATCTTAAGCTCCAGATAATGCTGCTCGAAGTCGGTGAATTCGCT
GAAACGAATCATGGAACAGGCCTCGTCCACTTGCAGGCAGTACTCGTTTG
ACTTGTACAAGGCCAGGATATCGTAATATATGTTCCCCTCCCGACATAGT
TCCTTTGGCACTGGTTGGGGCTTTTTGGGC
BO14254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12812-PA | 1146 | CG12812-RA | 299..1143 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-RA | 1248 | CG12812-RA | 346..1206 | 880..19 | 4285 | 99.9 | Minus |
| Fancl-RB | 1245 | CG12812-RB | 346..1203 | 880..19 | 4230 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10051643..10052467 | 55..880 | 4080 | 99.9 | Plus |
| 3R | 32079331 | 3R | 10051550..10051586 | 19..55 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:01:26 has no hits.
BO14254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:26 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12812-PA | 283..1146 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:06 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12812-PA | 283..1146 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:34:53 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 346..1214 | 10..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:05 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 346..1214 | 10..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:05 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10051542..10051585 | 10..54 | 91 | <- | Plus |
| 3R | 10051643..10052467 | 55..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:34:53 Download gff for
BO14254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5877264..5877307 | 10..54 | 91 | <- | Plus |
| arm_3R | 5877365..5878189 | 55..880 | 99 | | Plus |
BO14254.5prime Sequence
885 bp (833 high quality bases) assembled on 2006-05-29
> BO14254.5prime
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGCAAC
CATCGCCCATCAGCAGCAAACACAAAACACGACTGTTCCCTCTCAAGGAT
CGCGTCTACTTGAAGCTGACCATCGCGGATCCCTTTGCCTGCATTGCATC
CATGTCGCTAAAGATCATTGGGCCCACGGAAGAGGTGGCCCGCCTGCGCC
ACGTTCTCAGCGATGGTCTAAGTAACTGGGACTCCGAAATGAACATTCAC
AAGAACCTACTCCGAATGTTCGACTTGTGCTACTT
BO14254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12812-PA | 1146 | CG12812-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-RB | 1245 | CG12812-RB | 64..932 | 17..885 | 4345 | 100 | Plus |
| Fancl-RA | 1248 | CG12812-RA | 64..932 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10051881..10052640 | 885..126 | 3800 | 100 | Minus |
| 3R | 32079331 | 3R | 10052695..10052806 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:21:04 has no hits.
BO14254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:27 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12812-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:06 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12812-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:50 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..932 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:51 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..932 | 17..885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:51 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10051881..10052638 | 128..885 | 100 | <- | Minus |
| 3R | 10052696..10052806 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:50 Download gff for
BO14254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5877603..5878360 | 128..885 | 100 | <- | Minus |
| arm_3R | 5878418..5878528 | 17..127 | 100 | | Minus |
BO14254.complete Sequence
1177 bp assembled on 2006-10-11
GenBank Submission: FJ633058
> BO14254.complete
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGCAAC
CATCGCCCATCAGCAGCAAACACAAAACACGACTGTTCCCTCTCAAGGAT
CGCGTCTACTTGAAGCTGACCATCGCGGATCCCTTTGCCTGCATTGCATC
CATGTCGCTAAAGATCATTGGGCCCACGGAAGAGGTGGCCCGCCTGCGCC
ACGTTCTCAGCGATGGTCTAAGTAACTGGGACTCCGAAATGAACATTCAC
AAGAACCTACTCCGAATGTTCGACTTGTGCTACTTTCCCATGCCAGACTG
GTCGGATGGACCCAAGCTGGATGAAGAGGACAACGAAGAGCTGCGCTGTA
ACATTTGCTTTGCCTATCGCCTGGATGGTGGCGAGGTGCCCCTCGTCTCC
TGCGACAATGCCAAATGTGTGCTAAAGTGCCATGCCGTCTGTTTGGAGGA
GTGGTTTAAGACTCTGATGGATGGCAAGACCTTTCTGGAGGTCTCCTTCG
GCCAGTGTCCCTTCTGCAAGGCGAAGCTGTCCACCTCATTTGCGGCACTT
TTAAATGATGCAAGCTTTCTAGACCAT
BO14254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-RA | 1146 | CG12812-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
| Fancl-RB | 1143 | CG12812-PB | 1..1140 | 17..1159 | 5635 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-RA | 1248 | CG12812-RA | 64..1206 | 17..1159 | 5715 | 100 | Plus |
| Fancl-RB | 1245 | CG12812-RB | 64..1203 | 17..1159 | 5635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10051643..10052640 | 1123..126 | 4990 | 100 | Minus |
| 3R | 32079331 | 3R | 10052695..10052806 | 128..17 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 10051550..10051586 | 1159..1123 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:23:04 has no hits.
BO14254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:39 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 1..1146 | 17..1162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:41 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 41..1191 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:35 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..1206 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:39 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 41..1191 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:46 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..1206 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:46 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10051547..10051585 | 1124..1161 | 94 | <- | Minus |
| 3R | 10051643..10052638 | 128..1123 | 100 | <- | Minus |
| 3R | 10052696..10052806 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:35 Download gff for
BO14254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5878418..5878528 | 17..127 | 100 | | Minus |
| arm_3R | 5877269..5877307 | 1124..1161 | 94 | <- | Minus |
| arm_3R | 5877365..5878360 | 128..1123 | 100 | <- | Minus |
BO14254.pep Sequence
Translation from 16 to 1177
> BO14254.pep
MESNEDVERLLCQKYPGLAAELQPSGACIIRGVLGSEDTWRRLKLYLPHH
PALHGFQLYVQESLEYKLYTSANLKLQDDWLLEDFLDHLPKILPAQKAPT
VPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLEL
KIPSLLLLDHSLPDCVSLGEMLTKSAGNLEEALNLFRKLLEDLRPFYDNF
MDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKI
IGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPK
LDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL
MDGKTFLEVSFGQCPFCKAKLSTSFAALLNDASFLDH
BO14254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-PA | 381 | CG12812-PA | 1..381 | 1..381 | 2043 | 100 | Plus |
| Fancl-PB | 380 | CG12812-PB | 1..380 | 1..381 | 2026 | 99.7 | Plus |
