Clone Sequence Records
BO14261.3prime Sequence
801 bp (728 high quality bases) assembled on 2006-05-29
> BO14261.3prime
ATGGTCTAGAAAGCTTGCGATGTATCGCTTGGCTTCCTCCTCGGAGTCGC
TGTGATTTTGCTTCCTCGGCGGTGTCTTTTTGTTCGCCTTGTATTTGCCG
CGACTTTGTTTGCCTTTAAGGCCTGCCTTCGATGGGCTTGCTTCCGAGCG
CATGGGCAGTTCCTGGGAGTCCTCATCGTGTGGCAGCCAGTCGCTGGTGT
CCATCGGTGCGCCAGCACTTTCCTCTTTGGACGGCTCTTCGTTGGCCACA
GGCGTCTCACTGCTCTCGTTATTATCCAACTGCATTTTCTCGCTTGGCGG
AGGTTGCTGCTCCTGTTTCTGTCTGCCCATCAGTTTGTTGTAGCTCAACT
TGTGCTCCGTATTTAAAATCAGTGCCACCAGCCCATCGACCGATTGATCG
CCCTGCGATCGACACTCTTCGTCCAGCGCCAAAGCTTTGCGTACGAAATT
CAACAGAGACTTGCAACGAACCGCCGCATTGCGGGCACACTGCATGATGA
TACGGGCATTTGTGGGTGCAGTGCCTCCGGCAGTCAGGCTGCACAGCTCC
TGGAAGGAGTTAAAGCTCAGGACAATTACCGAATCGGCGGCGTTCTCCTC
CAGCAGCGTAGGATCCAGTATTGGTTGCACACTGCTCTTGTAAACACAGT
AGGTTACACTGACGGGATAGTGGTGGAAAAGCAGTGGAATGAATTCGCGC
TCCTTTTTCTTAAAGATGCGCAGTTCGCCGTCCTTATACCAGACATCCGG
TCGACGGAAGTGCATCAATGCAGCCAAAGTGGCTATGGTGCTGGCGTCAT
A
BO14261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9606-PA | 1239 | Rrp45-RA | 454..1236 | 801..19 | 3890 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1647 | CG9606-RB | 590..1372 | 801..19 | 3900 | 99.9 | Minus |
| Rrp45-RA | 1599 | CG9606-RA | 590..1372 | 801..19 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16789773..16790514 | 57..798 | 3695 | 99.9 | Plus |
| X | 23542271 | X | 16789680..16789717 | 19..56 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:15:48 has no hits.
BO14261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:39 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-PA | 455..1239 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:24 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9606-PA | 455..1239 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:49 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 558..1343 | 13..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:39 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 591..1376 | 13..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:39 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16789676..16789717 | 13..56 | 93 | <- | Plus |
| X | 16789773..16790515 | 57..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:49 Download gff for
BO14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16683709..16683750 | 13..56 | 93 | <- | Plus |
| arm_X | 16683806..16684548 | 57..800 | 99 | | Plus |
BO14261.5prime Sequence
823 bp (742 high quality bases) assembled on 2006-05-29
> BO14261.5prime
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCACATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCGGAGGCAC
TGCACCCACAAATGCCCGTATCATCATGCAGTGTGCCCGCAATGCGGCGG
GTCGTTGCAAGTCTCTGTTGAAT
BO14261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9606-PA | 1239 | Rrp45-RA | 1..807 | 17..823 | 3960 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1647 | CG9606-RB | 137..943 | 17..823 | 3990 | 99.6 | Plus |
| Rrp45-RA | 1599 | CG9606-RA | 137..943 | 17..823 | 3990 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16790674..16791130 | 473..17 | 2270 | 99.8 | Minus |
| X | 23542271 | X | 16790164..16790514 | 823..473 | 1725 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:31:18 has no hits.
BO14261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:40 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:26 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9606-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:31:49 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 100..910 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:44 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 133..943 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:44 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16790164..16790513 | 474..823 | 99 | <- | Minus |
| X | 16790674..16791134 | 9..473 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:31:49 Download gff for
BO14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16684197..16684546 | 474..823 | 99 | <- | Minus |
| arm_X | 16684707..16685167 | 9..473 | 98 | | Minus |
BO14261.complete Sequence
1270 bp assembled on 2006-10-11
GenBank Submission: FJ633060
> BO14261.complete
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCACATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCGGAGGCAC
TGCACCCACAAATGCCCGTATCATCATGCAGTGTGCCCGCAATGCGGCGG
TTCGTTGCAAGTCTCTGTTGAATTTCGTACGCAAAGCTTTGGCGCTGGAC
GAAGAGTGTCGATCGCAGGGCGATCAATCGGTCGATGGGCTGGTGGCACT
GATTTTAAATACGGAGCACAAGTTGAGCTACAACAAACTGATGGGCAGAC
AGAAACAGGAGCAGCAACCTCCGCCAAGCGAGAAAATGCAGTTGGATAAT
AACGAGAGCAGTGAGACGCCTGTGGCCAACGAAGAGCCGTCCAAAGAGGA
AAGTGCTGGCGCACCGATGGACACCAGCGACTGGCTGCCACACGATGAGG
ACTCCCAGGAACTGCCCATGCGCTCGGAAGCAAGCCCATCGAAGGCAGGC
CTTAAAGGCAAACAAAGTCGCGGCAAATACAAGGCGAACAAAAAGACACC
GCCGAGGAAGCAAAATCACAGCGACTCCGAGGAGGAAGCCAAGCGATACA
TCGCAAGCTTTCTAGACCAT
BO14261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1239 | CG9606-PB | 1..1236 | 17..1252 | 6150 | 99.8 | Plus |
| Rrp45-RA | 1239 | CG9606-PA | 1..1236 | 17..1252 | 6150 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1647 | CG9606-RB | 137..1372 | 17..1252 | 6150 | 99.8 | Plus |
| Rrp45-RA | 1599 | CG9606-RA | 137..1372 | 17..1252 | 6150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16789773..16790514 | 1214..473 | 3695 | 99.9 | Minus |
| X | 23542271 | X | 16790674..16791130 | 473..17 | 2270 | 99.8 | Minus |
| X | 23542271 | X | 16789680..16789717 | 1252..1215 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:06 has no hits.
BO14261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:42 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 1..1239 | 17..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:58 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 18..1261 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:51 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 109..1339 | 22..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:42 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 18..1261 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:58 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 142..1372 | 22..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:58 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16790674..16791125 | 22..473 | 99 | | Minus |
| X | 16789676..16789717 | 1215..1254 | 95 | <- | Minus |
| X | 16789773..16790513 | 474..1214 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:51 Download gff for
BO14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16683709..16683750 | 1215..1254 | 95 | <- | Minus |
| arm_X | 16683806..16684546 | 474..1214 | 99 | <- | Minus |
| arm_X | 16684707..16685158 | 22..473 | 99 | | Minus |
BO14261.pep Sequence
Translation from 16 to 1270
> BO14261.pep
MFHNSNFFEPGKSKPERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWG
SVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTT
HDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGN
LYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSV
TYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNA
RIIMQCARNAAVRCKSLLNFVRKALALDEECRSQGDQSVDGLVALILNTE
HKLSYNKLMGRQKQEQQPPPSEKMQLDNNESSETPVANEEPSKEESAGAP
MDTSDWLPHDEDSQELPMRSEASPSKAGLKGKQSRGKYKANKKTPPRKQN
HSDSEEEAKRYIASFLDH
BO14261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-PB | 412 | CG9606-PB | 1..412 | 1..412 | 2146 | 100 | Plus |
| Rrp45-PA | 412 | CG9606-PA | 1..412 | 1..412 | 2146 | 100 | Plus |
