Clone Sequence Records
BO14262.3prime Sequence
842 bp (799 high quality bases) assembled on 2006-05-29
> BO14262.3prime
ATGGTCTAGAAAGCTTGCTTCTTTATTATGGGCGATGATATGGTTAAGGA
TCCAGTCCAAGTAGCTGCTGATGCGGGTGAACACGGCCGGGAATCCCACT
TGACATCCCATAGAGGTTCCAAAAGAGGTGGATCCGATCAGGTAGCTGGA
GTTGCCCTGCTTGTAGACCAGCGGACCGCCAGAGTCACCATGGCAGGTGG
ACTTGCCGCTGGTGGTGCTCATGCAGATCATCTTCTCCGACACAGCTCCA
CTCCAGTACATCCGGCACAGGGAGTGAGGCATAATGGGCATCTCCACGTA
TCTCAGCACGGGGGAAACCGAGTCGGAGGCATCGCTTTCCCGCCCCCAGC
CGGAGGCGAAGGCCCGGATGGACTCGTACGTGGGAAACTGGCCATTCAAG
CGACGGGGCAAACTGGCGGCCCGGATGCGATCAGTGAAACCCACAAAGGC
GGGCAATCGAATAAGCGAGATGTCATTGACCACCGTGCTGGCCATATAGT
TCGAGTGCACTATAATACCCGACTTCTCCACCATGATCCTTTCCTGACCC
TCCTCGGACTCATCACCGATGTTTATGGCCCCCAAATAGACCGTTACGGA
CTCCGCCCCATCCATGCAGTGTGCTGCTGTGATTATCCAGTAGTGTGAGA
TCAAGGTGCCGCCGCACCAAGTGCTCCAGTTCCCGAAGGAGACGTTCAGA
CCGGCCTGGTAGGGAAACTGACCCACCTCCGCCGGTTCTCCATTCGTAAT
ATAGGGTTCCACATCGGTAAGGAGGGGAACAGCCGTACAGGATCCTACCA
GCAGGACGCAAACCAAAAGTTTCATCATGTCGACTGATAACT
BO14262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PA | 813 | CG7542-RA | 1..810 | 828..19 | 4000 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 12..821 | 828..19 | 4020 | 99.8 | Minus |
CG7542-RA | 833 | CG7542-RA | 12..821 | 828..19 | 4020 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549837..17550646 | 828..19 | 4020 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:34:21 has no hits.
BO14262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:41 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:28 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:46 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 12..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:29 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 12..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:29 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549837..17550652 | 12..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:46 Download gff for
BO14262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17542937..17543752 | 12..828 | 99 | | Minus |
BO14262.5prime Sequence
842 bp (841 high quality bases) assembled on 2006-05-29
> BO14262.5prime
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAAGCAAGCTTTCTAGACC
BO14262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PA | 813 | CG7542-RA | 1..810 | 17..826 | 4000 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 12..821 | 17..826 | 4020 | 99.8 | Plus |
CG7542-RA | 833 | CG7542-RA | 12..821 | 17..826 | 4020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549837..17550646 | 17..826 | 4020 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:57:15 has no hits.
BO14262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:42 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:29 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:13 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:48 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:48 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549837..17550652 | 17..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:13 Download gff for
BO14262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17542937..17543752 | 17..833 | 99 | | Plus |
BO14262.complete Sequence
844 bp assembled on 2006-10-11
GenBank Submission: FJ633061
> BO14262.complete
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAAGCAAGCTTTCTAGACCAT
BO14262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 813 | CG7542-PB | 1..810 | 17..826 | 4020 | 99.8 | Plus |
CG7542-RA | 813 | CG7542-PA | 1..810 | 17..826 | 4020 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 12..821 | 17..826 | 4020 | 99.8 | Plus |
CG7542-RA | 833 | CG7542-RA | 12..821 | 17..826 | 4020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549837..17550646 | 17..826 | 4020 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:20:28 has no hits.
BO14262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:44 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:00 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:37 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..821 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:44 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:19 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..821 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549837..17550646 | 17..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:37 Download gff for
BO14262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17542937..17543746 | 17..828 | 99 | | Plus |
BO14262.pep Sequence
Translation from 16 to 844
> BO14262.pep
MMKLLVCVLLVGSCTAVPLLTDVEPYITNGEPAEVGQFPYQAGLNVSFGN
WSTWCGGTLISHYWIITAAHCMDGAESVTVYLGAINIGDESEEGQERIMV
EKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPT
YESIRAFASGWGRESDASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKM
ICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTSFGTSMGCQVGFPAVF
TRISSYLDWILNHIIAHNKEASFLDH
BO14262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PB | 270 | CG7542-PB | 1..270 | 1..270 | 1431 | 100 | Plus |
CG7542-PA | 270 | CG7542-PA | 1..270 | 1..270 | 1431 | 100 | Plus |
CG10472-PA | 290 | CG10472-PA | 47..279 | 27..260 | 585 | 50.2 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 28..265 | 17..260 | 545 | 46.3 | Plus |
yip7-PA | 270 | CG6457-PA | 1..264 | 2..260 | 499 | 42 | Plus |