Clone BO14262 Report

Search the DGRC for BO14262

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG7542-RA
Protein status:BO14262.pep: validated full length
Sequenced Size:844

Clone Sequence Records

BO14262.3prime Sequence

842 bp (799 high quality bases) assembled on 2006-05-29

> BO14262.3prime
ATGGTCTAGAAAGCTTGCTTCTTTATTATGGGCGATGATATGGTTAAGGA
TCCAGTCCAAGTAGCTGCTGATGCGGGTGAACACGGCCGGGAATCCCACT
TGACATCCCATAGAGGTTCCAAAAGAGGTGGATCCGATCAGGTAGCTGGA
GTTGCCCTGCTTGTAGACCAGCGGACCGCCAGAGTCACCATGGCAGGTGG
ACTTGCCGCTGGTGGTGCTCATGCAGATCATCTTCTCCGACACAGCTCCA
CTCCAGTACATCCGGCACAGGGAGTGAGGCATAATGGGCATCTCCACGTA
TCTCAGCACGGGGGAAACCGAGTCGGAGGCATCGCTTTCCCGCCCCCAGC
CGGAGGCGAAGGCCCGGATGGACTCGTACGTGGGAAACTGGCCATTCAAG
CGACGGGGCAAACTGGCGGCCCGGATGCGATCAGTGAAACCCACAAAGGC
GGGCAATCGAATAAGCGAGATGTCATTGACCACCGTGCTGGCCATATAGT
TCGAGTGCACTATAATACCCGACTTCTCCACCATGATCCTTTCCTGACCC
TCCTCGGACTCATCACCGATGTTTATGGCCCCCAAATAGACCGTTACGGA
CTCCGCCCCATCCATGCAGTGTGCTGCTGTGATTATCCAGTAGTGTGAGA
TCAAGGTGCCGCCGCACCAAGTGCTCCAGTTCCCGAAGGAGACGTTCAGA
CCGGCCTGGTAGGGAAACTGACCCACCTCCGCCGGTTCTCCATTCGTAAT
ATAGGGTTCCACATCGGTAAGGAGGGGAACAGCCGTACAGGATCCTACCA
GCAGGACGCAAACCAAAAGTTTCATCATGTCGACTGATAACT

BO14262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PA 813 CG7542-RA 1..810 828..19 4000 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 12..821 828..19 4020 99.8 Minus
CG7542-RA 833 CG7542-RA 12..821 828..19 4020 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549837..17550646 828..19 4020 99.8 Minus
Blast to na_te.dros performed on 2015-02-03 06:34:21 has no hits.

BO14262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:41 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 1..813 15..828 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:28 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 1..813 15..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:46 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 12..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:29 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 12..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:29 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17549837..17550652 12..828 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:46 Download gff for BO14262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17542937..17543752 12..828 99   Minus

BO14262.5prime Sequence

842 bp (841 high quality bases) assembled on 2006-05-29

> BO14262.5prime
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAAGCAAGCTTTCTAGACC

BO14262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PA 813 CG7542-RA 1..810 17..826 4000 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 12..821 17..826 4020 99.8 Plus
CG7542-RA 833 CG7542-RA 12..821 17..826 4020 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549837..17550646 17..826 4020 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 12:57:15 has no hits.

BO14262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:42 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:29 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:13 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:48 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:48 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17549837..17550652 17..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:13 Download gff for BO14262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17542937..17543752 17..833 99   Plus

BO14262.complete Sequence

844 bp assembled on 2006-10-11

GenBank Submission: FJ633061

> BO14262.complete
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAAGCAAGCTTTCTAGACCAT

BO14262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 813 CG7542-PB 1..810 17..826 4020 99.8 Plus
CG7542-RA 813 CG7542-PA 1..810 17..826 4020 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 12..821 17..826 4020 99.8 Plus
CG7542-RA 833 CG7542-RA 12..821 17..826 4020 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549837..17550646 17..826 4020 99.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:20:28 has no hits.

BO14262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:44 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:00 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:37 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..821 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:44 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:19 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..821 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17549837..17550646 17..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:37 Download gff for BO14262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17542937..17543746 17..828 99   Plus

BO14262.pep Sequence

Translation from 16 to 844

> BO14262.pep
MMKLLVCVLLVGSCTAVPLLTDVEPYITNGEPAEVGQFPYQAGLNVSFGN
WSTWCGGTLISHYWIITAAHCMDGAESVTVYLGAINIGDESEEGQERIMV
EKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPT
YESIRAFASGWGRESDASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKM
ICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTSFGTSMGCQVGFPAVF
TRISSYLDWILNHIIAHNKEASFLDH

BO14262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PB 270 CG7542-PB 1..270 1..270 1431 100 Plus
CG7542-PA 270 CG7542-PA 1..270 1..270 1431 100 Plus
CG10472-PA 290 CG10472-PA 47..279 27..260 585 50.2 Plus
Jon65Aiv-PA 271 CG6467-PA 28..265 17..260 545 46.3 Plus
yip7-PA 270 CG6457-PA 1..264 2..260 499 42 Plus