Clone Sequence Records
BO14263.3prime Sequence
752 bp (676 high quality bases) assembled on 2006-05-29
> BO14263.3prime
ATGGTCTAGAAAGCTTGCACGCCAATGGGGGACCTTGCTAACCGCTTTTC
CACAATTGAATGATTGATTGCCTTTGCTGTACTTCGATGAATCGTGTATC
GATGGTGCGTTTAGACCGTTCCGCATATCCCGGTACATGGGAGCGTCGTA
GGAGGTCTTCATCCGGTTGACCTGTTGGTGTCCCTGGCTCGGCTGCTGAT
AGTGCTGCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGGTGGTACTGC
GGCTGGTGACTCTGCATAGGCTGACTGTATTGCCACATATTGGAGCTGTT
CATCATTTGGTTGGGGCTGGGACCGGAGCTCCAGCCGCCAGCTTGCGAGG
GCGACGAGGGACAGGGCGCAGACATCACAGCATTGCAGCCGCCCGTCAGA
CGTCCTTGATGCATTTGGGTGGTAGATCCACTGGGATTGTACTGTTGCAG
CGGCTGCATCTGACCCATCGAGGTCATCGGCTGCAGGTCAGGCAGCACTG
CATTGATCCCGGGGGCATCGATGGCGCCCATGGGATTGCCCATCATGGGC
ATCATGGTCATGCTGCTCAGGGGAGTCACCGCTCCAATCGGCAGCTGGGT
GGACATCGTGGACATGGGGGTCATCTGATTGCCCCCTTGCATCATGCCCA
GCGGCATACCCTGCATTGGGTACGACGAAGCGCCCGACTGGCACACGGGC
ATCTGCATCTGCAGATTCATCTGCGGTGGATTCAGGGGCTGCATGGCCAT
GG
BO14263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-PA | 852 | CG3124-RA | 116..849 | 752..19 | 3670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-RA | 1179 | CG3124-RA | 261..994 | 752..19 | 3670 | 100 | Minus |
CG3124-RB | 1206 | CG3124-RB | 261..904 | 752..109 | 3220 | 100 | Minus |
CG3124-RB | 1206 | CG3124-RB | 931..1021 | 109..19 | 455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23283153..23283795 | 110..752 | 3215 | 100 | Plus |
2R | 25286936 | 2R | 23283017..23283076 | 50..109 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:14:10 has no hits.
BO14263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:43 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-PA | 116..852 | 16..752 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:30 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-PA | 116..852 | 16..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:11:02 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 261..994 | 19..752 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:03 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 261..994 | 19..752 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:03 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23283018..23283076 | 51..109 | 100 | <- | Plus |
2R | 23282928..23282959 | 19..50 | 100 | <- | Plus |
2R | 23283153..23283795 | 110..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:11:02 Download gff for
BO14263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19170451..19170482 | 19..50 | 100 | <- | Plus |
arm_2R | 19170541..19170599 | 51..109 | 100 | <- | Plus |
arm_2R | 19170676..19171318 | 110..752 | 100 | | Plus |
BO14263.5prime Sequence
807 bp (722 high quality bases) assembled on 2006-05-29
> BO14263.5prime
GAAGTTATCAGTCGACATGAATTTTTGTTCAGTGCCTTACGAAGCTGACT
ACGGCATGTACGCCGATTCCAAGATGAAGAGCGTTCCTCAGTACCCCCTG
AGCATGGGAGTCGGTCAGGGTCAAGGACAGTCCATGGCCATGCAGCCCCT
GAATCCACCGCAGATGAATCTGCAGATGCAGATGCCCGTGTGCCAGTCGG
GCGCTTCGTCGTACCCAATGCAGGGTATGCCGCTGGGCATGATGCAAGGG
GGCAATCAGATGACCCCCATGTCCACGATGTCCACCCAGCTGCCGATTGG
AGCGGTGACTCCCCTGAGCAGCATGACCATGATGCCCATGATGGGCAATC
CCATGGGCGCCATCGATGCCCCCGGGATCAATGCAGTGCTGCCTGACCTG
CAGCCGATGACCTCGATGGGTCAGATGCAGCCGCTGCAACAGTACAATCC
CAGTGGATCTACCACCCAAATGCATCAAGGACGTCTGACGGGCGGCTGCA
ATGCTGTGATGTCTGCGCCCTGTCCCTCGTCGCCCTCGCAAGCTGGCGGC
TGGAGCTCCGGTCCCAGCCCCAACCAAATGATGAACAGCTCCAATATGTG
GCAATACAGTCAGCCTATGCAGAGTCACCAGCCGCAGTACCACCAGCAGC
ACCAGCAGCAGCAGCAACAGCAGCAGCAGCACTATCAGCAGCCGAGCCAG
GGACACCAACAGGTCAACCGGATGAAGACCTCCTACGACGCTCCCATGTA
CCGGGATATGCGGAACGGTCTAAACGCACCATCGATACACGATTCATCGA
AATACAG
BO14263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-PA | 852 | CG3124-RA | 1..791 | 17..807 | 3880 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-RA | 1179 | CG3124-RA | 146..936 | 17..807 | 3910 | 99.6 | Plus |
CG3124-RB | 1206 | CG3124-RB | 146..904 | 17..775 | 3765 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23283153..23283855 | 774..72 | 3485 | 99.7 | Minus |
2R | 25286936 | 2R | 23283912..23283968 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:26 has no hits.
BO14263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:44 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:31 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:49 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 138..936 | 9..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:38 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 138..936 | 9..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:38 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23283912..23283976 | 9..73 | 95 | | Minus |
2R | 23283044..23283076 | 775..807 | 96 | <- | Minus |
2R | 23283153..23283853 | 74..774 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:49 Download gff for
BO14263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19170567..19170599 | 775..807 | 96 | <- | Minus |
arm_2R | 19170676..19171376 | 74..774 | 99 | <- | Minus |
arm_2R | 19171435..19171499 | 9..73 | 95 | | Minus |
BO14263.complete Sequence
883 bp assembled on 2006-10-11
GenBank Submission: FJ633062
> BO14263.complete
GAAGTTATCAGTCGACATGAATTTTTGTTCAGTGCCTTACGAAGCTGACT
ACGGCATGTACGCCGATTCCAAGATGAAGAGCGTTCCTCAGTACCCCCTG
AGCATGGGAGTCGGTCAGGGTCAAGGACAGTCCATGGCCATGCAGCCCCT
GAATCCACCGCAGATGAATCTGCAGATGCAGATGCCCGTGTGCCAGTCGG
GCGCTTCGTCGTACCCAATGCAGGGTATGCCGCTGGGCATGATGCAAGGG
GGCAATCAGATGACCCCCATGTCCACGATGTCCACCCAGCTGCCGATTGG
AGCGGTGACTCCCCTGAGCAGCATGACCATGATGCCCATGATGGGCAATC
CCATGGGCGCCATCGATGCCCCCGGGATCAATGCAGTGCTGCCTGACCTG
CAGCCGATGACCTCGATGGGTCAGATGCAGCCGCTGCAACAGTACAATCC
CAGTGGATCTACCACCCAAATGCATCAAGGACGTCTGACGGGCGGCTGCA
ATGCTGTGATGTCTGCGCCCTGTCCCTCGTCGCCCTCGCAAGCTGGCGGC
TGGAGCTCCGGTCCCAGCCCCAACCAAATGATGAACAGCTCCAATATGTG
GCAATACAGTCAGCCTATGCAGAGTCACCAGCCGCAGTACCACCAGCAGC
ACCAGCAGCAGCAGCAACAGCAGCAGCAGCACTATCAGCAGCCGAGCCAG
GGACACCAACAGGTCAACCGGATGAAGACCTCCTACGACGCTCCCATGTA
CCGGGATATGCGGAACGGTCTAAACGCACCATCGATACACGATTCATCGA
AGTACAGCAAAGGCAATCAATCATTCAATTGTGGAAAAGCGGTTAGCAAG
GTCCCCCATTGGCGTGCAAGCTTTCTAGACCAT
BO14263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-RA | 852 | CG3124-PA | 1..849 | 17..865 | 4215 | 99.8 | Plus |
CG3124-RB | 771 | CG3124-PB | 1..759 | 17..775 | 3765 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-RA | 1179 | CG3124-RA | 146..994 | 17..865 | 4215 | 99.8 | Plus |
CG3124-RB | 1206 | CG3124-RB | 146..904 | 17..775 | 3765 | 99.7 | Plus |
CG3124-RB | 1206 | CG3124-RB | 931..1021 | 775..865 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23283153..23283855 | 774..72 | 3485 | 99.7 | Minus |
2R | 25286936 | 2R | 23283017..23283076 | 834..775 | 300 | 100 | Minus |
2R | 25286936 | 2R | 23283912..23283968 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:35 has no hits.
BO14263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:49 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:03 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 138..994 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:12 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 146..994 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:49 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 128..984 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:01 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3124-RA | 146..994 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:01 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23282924..23282959 | 834..867 | 94 | <- | Minus |
2R | 23283018..23283076 | 775..833 | 100 | <- | Minus |
2R | 23283153..23283853 | 74..774 | 99 | <- | Minus |
2R | 23283912..23283968 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:12 Download gff for
BO14263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19170447..19170482 | 834..867 | 94 | <- | Minus |
arm_2R | 19170541..19170599 | 775..833 | 100 | <- | Minus |
arm_2R | 19170676..19171376 | 74..774 | 99 | <- | Minus |
arm_2R | 19171435..19171491 | 17..73 | 100 | | Minus |
BO14263.pep Sequence
Translation from 16 to 883
> BO14263.pep
MNFCSVPYEADYGMYADSKMKSVPQYPLSMGVGQGQGQSMAMQPLNPPQM
NLQMQMPVCQSGASSYPMQGMPLGMMQGGNQMTPMSTMSTQLPIGAVTPL
SSMTMMPMMGNPMGAIDAPGINAVLPDLQPMTSMGQMQPLQQYNPSGSTT
QMHQGRLTGGCNAVMSAPCPSSPSQAGGWSSGPSPNQMMNSSNMWQYSQP
MQSHQPQYHQQHQQQQQQQQQHYQQPSQGHQQVNRMKTSYDAPMYRDMRN
GLNAPSIHDSSKYSKGNQSFNCGKAVSKVPHWRASFLDH
BO14263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3124-PA | 283 | CG3124-PA | 1..283 | 1..283 | 1539 | 100 | Plus |
CG3124-PB | 256 | CG3124-PB | 1..255 | 1..255 | 1377 | 99.6 | Plus |