Clone Sequence Records
BO14265.3prime Sequence
816 bp (742 high quality bases) assembled on 2006-05-29
> BO14265.3prime
ATGGTCTAGAAAGCTTGCTTTGCGCGAACCCTTGCCGCCTTCGTCCTTGC
CCTTGTCGGCCTTCTCCTCCGCCTTCTTGCCGTCCTTGTCCTTGGTCTCC
TTGTTGTCCTTATCCTTGCTATCCTTATTCTTCTCCTTGGCCTCCTTGCT
GTCGCTCTTGCCCTCCTCGGCGTCGCGGTTGGCCAGCTTGTTGTTGATCA
GGTTGTGCAGGGCAATGATCGAGCGCACCATGGAGGCCAGGTAGACGACC
AGCATTTGGTCGTTGGTCTTCACATACATTGTGCCCGTGAACTGGTCATT
GGTTATATCGGGCAGCAGGTTGAAGATGTCCTGCAGCTGGTAGACAATCT
GGTGGTTGATTGGCATCTTGCTGTCGCCGACGCGCTGCAGATACTGCTTT
ATGTCCCGCAGCTGGGCATTCAGGCCTTTCAGACCCATGAGCTGGTTGGT
GATCTTTTGCGACAGGCTGCCCACGGTTGTGTCCTTGATGTCACGCAGCA
GATGCTCCACGCCCACCTCCTCCGCCTCCTCGGCGCCAATCTCGCTGGGC
ACATGCTCGAAGGTTTTGCTGGTCGGAGAGCCGTCGTCATGGACTTCCTC
CACCGATATGTACGCCTCTGTGGGCAGGCCCAAATCCTTGGGCTTGGCGT
CGATGATGACCAGCACGGAGTTGGGACAATAGCGCCGGACCAGCTCGTTA
ATGGCTATGTCGTTTTGGTGGAGCTTGGGACCTGTGTGATACCATCCCAC
AACCCGTTCCCTGGCGTTCACCTTTTTGAACATGCCGTACATATTCTCCA
AGTAGTCGTGGTCAAG
BO14265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3416-PA | 1017 | Mov34-RA | 220..1014 | 813..19 | 3875 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 422..1216 | 813..19 | 3915 | 99.5 | Minus |
Rpn8-RB | 1456 | CG3416-RB | 405..1199 | 813..19 | 3915 | 99.5 | Minus |
Rpn8-RA | 1456 | CG3416-RA | 405..1199 | 813..19 | 3915 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403476..24404270 | 813..19 | 3915 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:39 has no hits.
BO14265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:48 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-PA | 217..1017 | 18..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:36 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3416-PA | 217..1017 | 18..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:34 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 402..1199 | 19..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:46 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 402..1199 | 19..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:46 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403473..24404270 | 19..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:34 Download gff for
BO14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20290996..20291793 | 19..816 | 99 | | Minus |
BO14265.5prime Sequence
914 bp (776 high quality bases) assembled on 2006-05-29
> BO14265.5prime
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAAGATCAC
CAACCAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAA
AGCAGTATCTGCAGCGCGTCGGCGACAGCAAGATGCCAATCAACCACCAG
ATTGTCTACCAGCTGCAGGACATCTTCAACCTGCTGCCCGATATAACCAA
TGACCAGTTCACGGGCACAATGTATGTGAAGACCAACGACCAAATGCTGG
TCGTCTACCTGGCCTCCATGGTGCGCTCGATCATTGCCCTGCACAACCTG
ATCAACAACAAGCTGGCCAACCGCGACGCCGAGGAGGGCAAGAGCGACAG
CAAGGAAGGCCAAG
BO14265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3416-PA | 1017 | Mov34-RA | 1..890 | 17..906 | 4375 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 201..1099 | 15..914 | 4430 | 99.6 | Plus |
Rpn8-RB | 1456 | CG3416-RB | 184..1082 | 15..914 | 4430 | 99.6 | Plus |
Rpn8-RA | 1456 | CG3416-RA | 184..1082 | 15..914 | 4430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403429..24404146 | 189..906 | 3545 | 99.6 | Plus |
2R | 25286936 | 2R | 24403188..24403364 | 15..191 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:15:33 has no hits.
BO14265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:49 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-PA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:37 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3416-PA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:53 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 179..1082 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:53 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 179..1082 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:53 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403183..24403364 | 9..191 | 97 | -> | Plus |
2R | 24403432..24404153 | 192..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:53 Download gff for
BO14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20290706..20290887 | 9..191 | 97 | -> | Plus |
arm_2R | 20290955..20291676 | 192..914 | 99 | | Plus |
BO14265.complete Sequence
1048 bp assembled on 2006-10-11
GenBank Submission: FJ633063
> BO14265.complete
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAAGATCAC
CAACCAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAA
AGCAGTATCTGCAGCGCGTCGGCGACAGCAAGATGCCAATCAACCACCAG
ATTGTCTACCAGCTGCAGGACATCTTCAACCTGCTGCCCGATATAACCAA
TGACCAGTTCACGGGCACAATGTATGTGAAGACCAACGACCAAATGCTGG
TCGTCTACCTGGCCTCCATGGTGCGCTCGATCATTGCCCTGCACAACCTG
ATCAACAACAAGCTGGCCAACCGCGACGCCGAGGAGGGCAAGAGCGACAG
CAAGGAGGCCAAGGAGAAGAATAAGGATAGCAAGGATAAGGACAACAAGG
AGACCAAGGACAAGGACGGCAAGAAGGCGGAGGAGAAGGCCGACAAGGGC
AAGGACGAAGGCGGCAAGGGTTCGCGCAAAGCAAGCTTTCTAGACCAT
BO14265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1017 | CG3416-PC | 1..1014 | 17..1030 | 5025 | 99.7 | Plus |
Rpn8-RB | 1077 | CG3416-PB | 1..1014 | 17..1030 | 5025 | 99.7 | Plus |
Rpn8-RA | 1017 | CG3416-PA | 1..1014 | 17..1030 | 5025 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 201..1216 | 15..1030 | 5035 | 99.7 | Plus |
Rpn8-RB | 1456 | CG3416-RB | 184..1199 | 15..1030 | 5035 | 99.7 | Plus |
Rpn8-RA | 1456 | CG3416-RA | 184..1199 | 15..1030 | 5035 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403429..24404270 | 189..1030 | 4165 | 99.6 | Plus |
2R | 25286936 | 2R | 24403188..24403364 | 15..191 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:00 has no hits.
BO14265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:52 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 1..1017 | 17..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:06 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 213..1233 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:09 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 186..1199 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:52 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 213..1233 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:57 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 186..1199 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:57 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403190..24403364 | 17..191 | 100 | -> | Plus |
2R | 24403432..24404270 | 192..1032 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:09 Download gff for
BO14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20290713..20290887 | 17..191 | 100 | -> | Plus |
arm_2R | 20290955..20291793 | 192..1032 | 99 | | Plus |
BO14265.pep Sequence
Translation from 16 to 1048
> BO14265.pep
MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGV
LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHT
GPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD
GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMG
LKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTG
TMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKE
KNKDSKDKDNKETKDKDGKKAEEKADKGKDEGGKGSRKASFLDH
BO14265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-PC | 338 | CG3416-PC | 1..338 | 1..338 | 1753 | 100 | Plus |
Rpn8-PA | 338 | CG3416-PA | 1..338 | 1..338 | 1753 | 100 | Plus |
Rpn8-PB | 358 | CG3416-PB | 1..338 | 1..338 | 1753 | 100 | Plus |
CG9769-PA | 280 | CG9769-PA | 8..271 | 11..276 | 259 | 28.7 | Plus |
CSN6-PA | 341 | CG6932-PA | 54..321 | 11..280 | 223 | 23 | Plus |