Clone Sequence Records
BO14267.3prime Sequence
900 bp (745 high quality bases) assembled on 2006-05-29
> BO14267.3prime
ATGGTCTAGAAAGCTTGCATTGCTATGGCGCACGGACAGGGAACTATACA
CCGATTTTTCGCTTTCGCGCCGGCTATTCGCAAAAATGCTCTGCTTCTTC
ACGATGAATTCCTCCTCATTACAGTGTATACAGGCAGTCAAGAAGTTATG
AATATGCTTTTCTTTCAATTCCTTGGAAATTTTTAGTGCCAGATCTAGAG
CTTCACTGGTTCGCTCGACTTTGTGGAGTGCAGCATTCGCCTTTATTATC
AGTAGGTAGCACAGAAACTGCCAAATGTAGCTATTGCATTTTTTTGCCTC
TTCAATAGACTTTCGGGCACTAAAACAGCATTCGTCAAACCTGTGTGATT
TAAGATGAATCTCTGCCATTTGGTGAAGTAGGTAGGACTTCTCTATAGGG
TACTTTGCGAAATTCATACGGTTCTCGAGTCGGTTTCCCATTAGACGTGA
TTTTGTCAAGGCCGGATCTACTGTTTCCGAGCCTTGGTGCGTAGTTCGAT
CCCCAAATACGAAGTGTTTCACTTCCTTTGACTTGTCCATAGGAAAGCGA
AGCAATCGAAGCAGTGCGTTCTTCTCCGAAAAGCGAAAGTTCTTCGGAAG
CGTGTACTGATCTACGTAGGCAAGCGCCAAAATATTGTACACCTCGTTGA
TGAATTCGAATTTCCAGGGCATAATCCTGTTGGTTTTTTTCACCACGTAA
TCTCCCATAACTTCCTCCACGTAACTGGTGAGTTTTGTTAGACTCTTGGT
TTTTCGAAGGTACCGAATACTACGCAGTGCGGAAATCATGTTTCGTCTTG
TTTGGTACTGAACTCGAAAAAGATATTCCTGGCGAAACTTATCCATCAAC
TTCTTGTTTGTGAACTTTTGGGATCGGATATTGTACATGGGGCTACGGGC
BO14267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 1740 | CG7634-RA | 856..1737 | 900..19 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 950..1831 | 900..19 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21566894..21567183 | 735..446 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 21567442..21567724 | 301..19 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 21566674..21566838 | 900..736 | 810 | 99.4 | Minus |
3L | 28110227 | 3L | 21567233..21567379 | 446..300 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:27:45 has no hits.
BO14267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:51 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 856..1740 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:41 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 856..1740 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:17:38 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 950..1843 | 7..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:32 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 950..1843 | 7..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:32 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21566674..21566838 | 736..900 | 99 | -> | Minus |
3L | 21566894..21567183 | 446..735 | 100 | -> | Minus |
3L | 21567234..21567379 | 300..445 | 100 | -> | Minus |
3L | 21567444..21567736 | 7..299 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:17:38 Download gff for
BO14267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21559774..21559938 | 736..900 | 99 | -> | Minus |
arm_3L | 21559994..21560283 | 446..735 | 100 | -> | Minus |
arm_3L | 21560334..21560479 | 300..445 | 100 | -> | Minus |
arm_3L | 21560544..21560836 | 7..299 | 98 | | Minus |
BO14267.5prime Sequence
793 bp (769 high quality bases) assembled on 2006-05-29
> BO14267.5prime
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATCCAAACCTTCTCTTGAATCAGTGT
BO14267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 1740 | CG7634-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 95..871 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21565520..21565809 | 17..306 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21566087..21566268 | 469..650 | 910 | 100 | Plus |
3L | 28110227 | 3L | 21565867..21566032 | 306..471 | 830 | 100 | Plus |
3L | 28110227 | 3L | 21566326..21566441 | 650..765 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:10:12 has no hits.
BO14267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:52 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:43 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:03 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..871 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:01 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..871 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:01 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21565520..21565808 | 17..305 | 100 | -> | Plus |
3L | 21565867..21566030 | 306..469 | 100 | -> | Plus |
3L | 21566088..21566267 | 470..649 | 100 | -> | Plus |
3L | 21566326..21566441 | 650..765 | 100 | -> | Plus |
3L | 21566506..21566533 | 766..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:03 Download gff for
BO14267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21558620..21558908 | 17..305 | 100 | -> | Plus |
arm_3L | 21558967..21559130 | 306..469 | 100 | -> | Plus |
arm_3L | 21559188..21559367 | 470..649 | 100 | -> | Plus |
arm_3L | 21559426..21559541 | 650..765 | 100 | -> | Plus |
arm_3L | 21559606..21559633 | 766..793 | 100 | | Plus |
BO14267.complete Sequence
1771 bp assembled on 2008-08-14
GenBank Submission: FJ633065
> BO14267.complete
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATCCAAACCTTCTCTTGAATCAGTGTAAGAACT
CCACTGAGTACTTACAAACGCTTTCTACAAAGAAATATGACGAGATCAAA
AGCTTTCTGAAAATTCTGGAAGCCCGTAGCCCCATGTACAATATCCGATA
CCAAAAGTTCACAAACAAGAAGTTGATGGATAAGTTTCGCCAGGAATATC
TTTTTCGAGTTCAGTACCAAACAAGACGAAACATGATTTCCGCACTGCGT
AGTATTCGGTACCTTCGAAAAACCAAGAGTCTAACAAAACTCACCAGTTA
CGTGGAGGAAGTTATGGGAGATTACGTGGTGAAAAAAACCAACAGGATTA
TGCCCTGGAAATTCGAATTCATCAACGAGGTGTACAATATTTTGGCGCTT
GCCTACGTAGATCAGTACACGCTTCCGAAGAACTTTCGCTTTTCGGAGAA
GAACGCACTGCTTCGATTGCTTCGCTTTCCTATGGACAAGTCAAAGGAAG
TGAAACACTTCGTATTTGGGGATCGAACTACGCACCAAGGCTCGGAAACA
GTAGATCCGGCCTTGACAAAATCACGTCTAATGGGAAACCGACTCGAGAA
CCGTATGAATTTCGCAAAGTACCCTATAGAGAAGTCCTACCTACTTCACC
AAATGGCAGAGATTCATCTTAAATCACACAGGTTTGACGAATGCTGTTTT
AGTGCCCGAAAGTCTATTGAAGAGGCAAAAAAATGCAATAGCTACATTTG
GCAGTTTCTGTGCTACCTACTGATAATAAAGGCGAATGCTGCACTCCACA
AAGTCGAGCGAACCAGTGAAGCTCTAGATCTGGCACTAAAAATTTCCAAG
GAATTGAAAGAAAAGCATATTCATAACTTCTTGACTGCCTGTATACACTG
TAATGAGGAGGAATTCATCGTGAAGAAGCAGAGCATTTTTGCGAATAGCC
GGCGCGAAAGCGAAAAATCGGTGTATAGTTCCCTGTCCGTGCGCCATAGC
AATGCAAGCTTTCTAGACCAT
BO14267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1740 | CG7634-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 95..1831 | 17..1753 | 8685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21565520..21565809 | 17..306 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21566894..21567183 | 1037..1326 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21567442..21567724 | 1471..1753 | 1415 | 100 | Plus |
3L | 28110227 | 3L | 21566087..21566268 | 469..650 | 910 | 100 | Plus |
3L | 28110227 | 3L | 21566656..21566838 | 854..1036 | 900 | 99.5 | Plus |
3L | 28110227 | 3L | 21565867..21566032 | 306..471 | 830 | 100 | Plus |
3L | 28110227 | 3L | 21567233..21567379 | 1326..1472 | 735 | 100 | Plus |
3L | 28110227 | 3L | 21566326..21566441 | 650..765 | 580 | 100 | Plus |
3L | 28110227 | 3L | 21566506..21566599 | 766..859 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:14:35 has no hits.
BO14267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:26 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1843 | 17..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:11 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1831 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:16 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1831 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:09 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1831 | 17..1755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:09 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21567444..21567724 | 1473..1755 | 99 | | Plus |
3L | 21567234..21567379 | 1327..1472 | 100 | -> | Plus |
3L | 21565520..21565808 | 17..305 | 100 | -> | Plus |
3L | 21565867..21566030 | 306..469 | 100 | -> | Plus |
3L | 21566088..21566267 | 470..649 | 100 | -> | Plus |
3L | 21566326..21566441 | 650..765 | 100 | -> | Plus |
3L | 21566506..21566599 | 766..859 | 100 | -> | Plus |
3L | 21566662..21566838 | 860..1036 | 100 | -> | Plus |
3L | 21566894..21567183 | 1037..1326 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:11 Download gff for
BO14267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21558620..21558908 | 17..305 | 100 | -> | Plus |
arm_3L | 21558967..21559130 | 306..469 | 100 | -> | Plus |
arm_3L | 21559188..21559367 | 470..649 | 100 | -> | Plus |
arm_3L | 21559426..21559541 | 650..765 | 100 | -> | Plus |
arm_3L | 21559606..21559699 | 766..859 | 100 | -> | Plus |
arm_3L | 21559762..21559938 | 860..1036 | 100 | -> | Plus |
arm_3L | 21559994..21560283 | 1037..1326 | 100 | -> | Plus |
arm_3L | 21560334..21560479 | 1327..1472 | 100 | -> | Plus |
arm_3L | 21560544..21560824 | 1473..1755 | 99 | | Plus |
BO14267.pep Sequence
Translation from 16 to 1771
> BO14267.pep
MTSIIPPGSLVPQAQGVEAAVPVWFKMDWSPEIEQGIYKDWGTYYSRRRR
ENLGMYYFDKALKLGPADFTTLYRRSQSKRKNAQADGALKDSLEAKRLLK
NLQRYDAPINLEVCDALYELNQLENAKAELHDNTRLFTGNKTKMFEQRLV
VVDENIEDACGPSMTQYISDKEKLIVHLKEVQNKYKPDTRPLWKILKEQE
KCDVLSIPEIEEEMLSPLEIARRSRAFDVFNQMFIDRSWHDVIFLKHVRK
NPNLLLNQCKNSTEYLQTLSTKKYDEIKSFLKILEARSPMYNIRYQKFTN
KKLMDKFRQEYLFRVQYQTRRNMISALRSIRYLRKTKSLTKLTSYVEEVM
GDYVVKKTNRIMPWKFEFINEVYNILALAYVDQYTLPKNFRFSEKNALLR
LLRFPMDKSKEVKHFVFGDRTTHQGSETVDPALTKSRLMGNRLENRMNFA
KYPIEKSYLLHQMAEIHLKSHRFDECCFSARKSIEEAKKCNSYIWQFLCY
LLIIKANAALHKVERTSEALDLALKISKELKEKHIHNFLTACIHCNEEEF
IVKKQSIFANSRRESEKSVYSSLSVRHSNASFLDH
BO14267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 579 | CG7634-PA | 1..579 | 1..579 | 3014 | 100 | Plus |
CG15128-PA | 580 | CG15128-PA | 1..564 | 1..569 | 1462 | 51 | Plus |
r-cup-PA | 594 | CG10998-PA | 20..578 | 24..581 | 1026 | 39.5 | Plus |
wa-cup-PB | 580 | CG10113-PB | 17..548 | 16..554 | 1024 | 41.7 | Plus |
p-cup-PA | 538 | CG12993-PA | 14..534 | 77..581 | 663 | 30.9 | Plus |