Clone Sequence Records
BO14268.3prime Sequence
880 bp (767 high quality bases) assembled on 2006-05-29
> BO14268.3prime
ATGGTCTAGAAAGCTTGCATAAGCCCATAGCTTTATAACTTTGTCCTTGC
CACCAGAGGCAACTCTAGAGCCATCGGGCGCCCAGTCCACTCCGAACACC
TCATCCGCATGTCCAGGCAGCTCCTGTGCCAGTTTCTTCGTCTGCACACT
CCATACTTTTAGAGTTGAGTCTTTGCTGCCGGAAACAATCAAGCGGGAGT
CCGCGGACCAGGCAACCGTGTAAACAGCCTGCACATGACCCCGGAAGGTG
GCCATGTACTGACCATCGCTGGCTCGCCACAGACGCACTGACTTGTCAAA
TGAAGCAGACGCAATTAGCTTTACATCCGGCGAATATTTCACATCGTTGA
CCACGTTCTGGTGCCCTGTCATGCGCTCAACGCACTTGTTCTGGTTGTTC
CGCCACAGATAGAGGGTGTTGTCATCCGAACAGGAAACCAGCGACTCCAC
CTCGTCAGGGCACACGGCCTGGTAGCGCTTCAAGGCAGATTCCTGCAATT
CCTCAGTGCTCAAACTGAGGTGGCTCTTGGAGCGATCCTTCACCGGATGG
AATGGACCAGTGCGCAGGACGTAATCGGTGCTCAGCGCAATGTTGTTTAC
CCAGTGAGCGTGGCCAGAGAACGTCCGGCACAAGATTCCATCAGCTGCTC
GCCACATCTTCACTGTGCGATCTTTGGAGGATGTATAAATAAGGCCCGCT
CCACCCCATCTCACTGCTGTCACAGCATTTGTGTGTCCGGCAATGTTCAT
AAGGCACTGGCCCAATTTTACGTCCCAAATCCGGCAGTCCCCGTCTCCAC
TGGCGGAAGCAAGTTTCCTGCACTCCGGATCGCGATGATACGGTTCCCAG
GCGAGGCAGTTGATGTGTTTCTTGTGCCCA
BO14268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2863-PA | 1467 | Nle-RA | 603..1464 | 880..19 | 4235 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1584 | CG2863-RA | 660..1521 | 880..19 | 4265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 567089..567462 | 507..880 | 1840 | 99.5 | Plus |
| 2L | 23513712 | 2L | 566680..567030 | 156..506 | 1740 | 99.7 | Plus |
| 2L | 23513712 | 2L | 566498..566626 | 29..157 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:38:59 has no hits.
BO14268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:53 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2863-PA | 604..1467 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:44 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2863-PA | 604..1467 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:43:42 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 661..1524 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:02 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 661..1524 | 15..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:02 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 566490..566624 | 21..155 | 97 | <- | Plus |
| 2L | 566680..567030 | 156..506 | 99 | <- | Plus |
| 2L | 567089..567461 | 507..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:43:42 Download gff for
BO14268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 566490..566624 | 21..155 | 97 | <- | Plus |
| arm_2L | 566680..567030 | 156..506 | 99 | <- | Plus |
| arm_2L | 567089..567461 | 507..879 | 99 | | Plus |
BO14268.5prime Sequence
916 bp (821 high quality bases) assembled on 2006-05-29
> BO14268.5prime
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTCCAAAGATCGCACAGTGAAGATGTGGCGA
GCAACTGATGGAATCTTGTGCCGGACGTTCTCTGGCCACGCTCACTGGGT
AAACAACATTGCGCTG
BO14268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2863-PA | 1467 | Nle-RA | 1..900 | 17..916 | 4375 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1584 | CG2863-RA | 58..957 | 17..916 | 4425 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 567165..568064 | 916..17 | 4425 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:07:44 has no hits.
BO14268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:54 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2863-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:46 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2863-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:42 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..957 | 14..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:07 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..957 | 14..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:07 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 567165..568066 | 14..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:42 Download gff for
BO14268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 567165..568066 | 14..916 | 99 | | Minus |
BO14268.complete Sequence
1498 bp assembled on 2006-10-11
GenBank Submission: FJ633066
> BO14268.complete
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTCCAAAGATCGCACAGTGAAGATGTGGCGA
GCAGCTGATGGAATCTTGTGCCGGACGTTCTCTGGCCACGCTCACTGGGT
AAACAACATTGCGCTGAGCACCGATTACGTCCTGCGCACTGGTCCATTCC
ATCCGGTGAAGGATCGCTCCAAGAGCCACCTCAGTTTGAGCACTGAGGAA
TTGCAGGAATCTGCCTTGAAGCGCTACCAGGCCGTGTGCCCTGACGAGGT
GGAGTCGCTGGTTTCCTGTTCGGATGACAACACCCTCTATCTGTGGCGGA
ACAACCAGAACAAGTGCGTTGAGCGCATGACAGGGCACCAGAACGTGGTC
AACGATGTGAAATATTCGCCGGATGTAAAGCTAATTGCGTCTGCTTCATT
TGACAAGTCAGTGCGTCTGTGGCGAGCCAGCGATGGTCAGTACATGGCCA
CCTTCCGGGGTCATGTGCAGGCTGTTTACACGGTTGCCTGGTCCGCGGAC
TCCCGCTTGATTGTTTCCGGCAGCAAAGACTCAACTCTAAAAGTATGGAG
TGTGCAGACGAAGAAACTGGCACAGGAGCTGCCTGGACATGCGGATGAGG
TGTTCGGAGTGGACTGGGCGCCCGATGGCTCTAGAGTTGCCTCTGGTGGC
AAGGACAAAGTTATAAAGCTATGGGCTTATGCAAGCTTTCTAGACCAT
BO14268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1467 | CG2863-PA | 1..1464 | 17..1480 | 7230 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1584 | CG2863-RA | 58..1521 | 17..1480 | 7230 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 567089..568064 | 992..17 | 4805 | 99.5 | Minus |
| 2L | 23513712 | 2L | 566680..567030 | 1343..993 | 1740 | 99.7 | Minus |
| 2L | 23513712 | 2L | 566498..566626 | 1470..1342 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:31 has no hits.
BO14268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:54 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 1..1467 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:41 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 97..1565 | 14..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:32 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 63..1521 | 22..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:55 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 97..1565 | 14..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:45 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 63..1521 | 22..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:45 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 567089..568059 | 22..992 | 99 | | Minus |
| 2L | 566490..566624 | 1344..1478 | 97 | <- | Minus |
| 2L | 566680..567030 | 993..1343 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:32 Download gff for
BO14268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 566490..566624 | 1344..1478 | 97 | <- | Minus |
| arm_2L | 566680..567030 | 993..1343 | 99 | <- | Minus |
| arm_2L | 567089..568059 | 22..992 | 99 | | Minus |
BO14268.pep Sequence
Translation from 16 to 1498
> BO14268.pep
MLAKKQKMQETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLG
LICNALLKNEEATPYLFFVGEDEIKKSLEDTLDLASVDTENVIDIVYQPQ
AVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDTTVRLWDLNT
ETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQKGRPL
SGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGH
TNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIAL
STDYVLRTGPFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVS
CSDDNTLYLWRNNQNKCVERMTGHQNVVNDVKYSPDVKLIASASFDKSVR
LWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKK
LAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLWAYASFLDH
BO14268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-PA | 488 | CG2863-PA | 1..488 | 1..488 | 2610 | 100 | Plus |
| ebi-PA | 700 | CG4063-PA | 353..689 | 117..480 | 358 | 28.4 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 102..408 | 155..486 | 346 | 25.7 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 102..408 | 155..486 | 346 | 25.7 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 102..408 | 155..486 | 346 | 25.7 | Plus |
| ebi-PA | 700 | CG4063-PA | 342..655 | 191..487 | 308 | 28 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 185..387 | 111..298 | 244 | 29.5 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 185..387 | 111..298 | 244 | 29.5 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 104..224 | 371..490 | 198 | 33.1 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 104..224 | 371..490 | 198 | 33.1 | Plus |
