Clone Sequence Records
BO14269.3prime Sequence
868 bp (750 high quality bases) assembled on 2006-05-29
> BO14269.3prime
ATGGTCTAGAAAGCTTGCTTGCGTGCAGGAACACGGATCTTTCTTGGCCA
GCTCCTTCTCCTTGAAACGCATCAGGGTCAGGATGTGGGCATGATTGGCT
GCCTTGGCGTAGTCGATTGGCGACATGCCCAGCTCATCCTTGATGTAGGG
ATTCTCGTAGTGCGGCAGCAGATAGTCTACCACCTCGTGATTACCTAACT
GGCAGGCGTAGTGCAGAGCCGTTCGTCCAGTCCGATCAGCCAGCGTGAGA
TTGGCTCCGGCTAGCCGAAATGACTCCAATCGCTTGATCTTGCCCCGCTC
GGTAAGGGCACGTAGTAGCTCCGCCTGGACCAGCGGCTGATCGTTCAGCT
TGGCGCCGTTCTTGAGCAGAGCGTTGATTATATCATGGTTGTCCGTGTCG
ATGGCCTCGTGCAACGGCGTGCGGTTGAATCGATCGTGGACATTTACCGG
ACAGCCGGCGGAAATTAGAAAGCAAACGCAGTTCAGTTTGCCCAGGAAGC
AGGCCAGGTGCATGGCGGAGCGACCATCGCAGTTGGTGTCGCACAGATTG
GCGCCGTACTGCTTAAGATCGCCCAACTTGTGGACATCACCTTCGGTGAC
CGCGGCCGCCACCAAAGCGGGATAGAATGTGGAGCACATCTGCTGCCGTT
CCATCGCCGTCGACATGTGCAATGTGCGGGCCACGCCCTCGATCAGATCA
ATGTCGTTAATCTTGGCAACCTTATTGGTGGTCAGCTCTCCGCGCAAACT
TAGTAGCATCACCTTCTTCTTTGTGGGAATGTCCCACTCCGGCTTGGACA
GCACATAAGCCAGTTTGGTAAAGGCTGCCTCCTGAGTCATATCGTAGCCG
GGTATTACGCCCACTTCC
BO14269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-PA | 1818 | CG8526-RA | 966..1815 | 868..19 | 4175 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-RB | 2066 | CG8526-RB | 1163..2012 | 868..19 | 4205 | 99.6 | Minus |
CG8526-RA | 2069 | CG8526-RA | 1166..2015 | 868..19 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9802558..9803407 | 868..19 | 4205 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:49 has no hits.
BO14269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:55 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-PA | 966..1818 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:47 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-PA | 966..1818 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:54:06 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 1166..2022 | 13..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:05 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 1166..2022 | 13..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:05 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9802558..9803414 | 13..868 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:54:06 Download gff for
BO14269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5628280..5629136 | 13..868 | 99 | | Minus |
BO14269.5prime Sequence
909 bp (838 high quality bases) assembled on 2006-05-29
> BO14269.5prime
GAAGTTATCAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGG
AGGCTCGCGTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGC
AACGAGTCCGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCT
TCAAGAGTTTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATG
ATGGTCCCATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTC
CTTTACGATTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGG
CTTCTGCGACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGT
CCTACGACGGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCC
GCCTCGGCACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATT
CACTGGGGCACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGA
ACTTCTTGGGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTG
CTGGTCTTCTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCT
CAATTCTGACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGG
GTCGGGCGAGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCG
TGCAATATTAAACCATTTTCACTTCATTCGGAACTCGAANAGAACGTGGC
GCTGCTGCGTATTTACCCGGGAATAAGTGCCAGTGTGGTGCAGGCAATCC
TGAAAGAGCCAACGAAAGGTGTTGTCCTCCAGACCTTTGGGGCCGGCAAT
TTTCCGGTTAATCGTGAGGACTTGCTGGACGAACTGAGGGAGGCGGTTCA
CAGAGGCGT
BO14269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-PA | 1818 | CG8526-RA | 1..893 | 17..909 | 4446 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-RA | 2069 | CG8526-RA | 201..1093 | 17..909 | 4454 | 99.9 | Plus |
CG8526-RB | 2066 | CG8526-RB | 201..1090 | 17..909 | 4399 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9801914..9802485 | 338..909 | 2849 | 99.8 | Plus |
3R | 32079331 | 3R | 9801627..9801852 | 112..337 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 9801480..9801576 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:29:39 has no hits.
BO14269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:56 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:48 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:48:37 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 201..1093 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:21:01 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 201..1093 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:21:01 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9801480..9801576 | 17..113 | 100 | -> | Plus |
3R | 9801629..9801852 | 114..337 | 100 | -> | Plus |
3R | 9801914..9802485 | 338..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:48:37 Download gff for
BO14269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5627202..5627298 | 17..113 | 100 | -> | Plus |
arm_3R | 5627351..5627574 | 114..337 | 100 | -> | Plus |
arm_3R | 5627636..5628207 | 338..909 | 99 | | Plus |
BO14269.complete Sequence
1849 bp assembled on 2008-08-15
GenBank Submission: FJ633067
> BO14269.complete
GAAGTTATCAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGG
AGGCTCGCGTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGC
AACGAGTCCGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCT
TCAAGAGTTTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATG
ATGGTCCCATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTC
CTTTACGATTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGG
CTTCTGCGACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGT
CCTACGACGGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCC
GCCTCGGCACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATT
CACTGGGGCACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGA
ACTTCTTGGGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTG
CTGGTCTTCTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCT
CAATTCTGACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGG
GTCGGGCGAGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCG
TGCAATATTAAACCATTTTCACTTCATTCGGAACTCGAAAAGAACGTGGC
GCTGCTGCGTATTTACCCGGGAATAAGTGCCAGTGTGGTGCAGGCAATCC
TGAAAGAGCCAACGAAAGGTGTTGTCCTCCAGACCTTTGGGGCCGGCAAT
TTTCCGGTTAATCGTGAGGACTTGCTGGACGAACTGAGGGAGGCGGTTCA
CAGAGGCGTTATTATTGTCAACATTACGCAGTGCTCGGCGGGCATGGTGG
CCAACATTTACGAGACAAGCCAGGGTCTGATGGAAGTGGGCGTAATACCC
GGCTACGATATGACTCAGGAGGCAGCCTTTACCAAACTGGCCTATGTGCT
GTCCAAGCCGGAGTGGGACATTCCCAACAAGAAGAAGGTGATGCTACTAA
GTTTGCGCGGAGAGCTGACCACCAATAAGGTTGCCAAGATTAACGACATT
GATCTGATCGAGGGCGTGGCCCGCACATTGCACATGTCGACGGCGATGGA
ACGGCAGCAGATGTGCTCCACATTCTATCCCGCTTTGGTGGCGGCCGCGG
TCACCGAAGGTGATGTCCACAAGTTGGGCGATCTTAAGCAGTACGGCGCC
AATCTGTGCGACACCAACTGCGATGGTCGCTCCGCCATGCACCTGGCCTG
CTTCCTGGGCAAACTGAACTGCGTTTGCTTTCTAATTTCCGCCGGCTGTC
CGGTAAATGTCCACGATCGATTCAACCGCACGCCGTTGCACGAGGCCATC
GACACGGACAACCATGATATAATCAACGCTCTGCTCAAGAACGGCGCCAA
GCTGAACGATCAGCCGCTGGTCCAGGCGGAGCTACTACGTGCCCTTACCG
AGCGGGGCAAGATCAAGCGATTGGAGTCATTTCGGCTAGCCGGAGCCAAT
CTCACGCTGGCTGATCGGACTGGACGAACGGCTCTGCACTACGCCTGCCA
GTTAGGTAATCACGAGGTGGTAGACTATCTGCTGCCGCACTACGAGAATC
CCTACATCAAGGATGAGCTGGGCATGTCGCCAATCGACTACGCCAAGGCA
GCCAATCATGCCCACATCCTGACCCTGATGCGTTTCAAGGAGAAGGAGCT
GGCCAAGAAAGATCCGTGTTCCTGCACGCAAGCAAGCTTTCTAGACCAT
BO14269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-RA | 1818 | CG8526-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
CG8526-RB | 1815 | CG8526-PB | 1..1812 | 17..1831 | 8995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-RA | 2069 | CG8526-RA | 201..2015 | 17..1831 | 9075 | 100 | Plus |
CG8526-RB | 2066 | CG8526-RB | 201..2012 | 17..1831 | 8995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9801914..9803407 | 338..1831 | 7470 | 100 | Plus |
3R | 32079331 | 3R | 9801627..9801852 | 112..337 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 9801480..9801576 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:34 has no hits.
BO14269.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:05 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 143..1964 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:55 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 201..2015 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:02 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 143..1957 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:55 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8526-RA | 201..2015 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:55 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9801629..9801852 | 114..337 | 100 | -> | Plus |
3R | 9801480..9801576 | 17..113 | 100 | -> | Plus |
3R | 9801914..9803407 | 338..1833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:55 Download gff for
BO14269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5627202..5627298 | 17..113 | 100 | -> | Plus |
arm_3R | 5627351..5627574 | 114..337 | 100 | -> | Plus |
arm_3R | 5627636..5629129 | 338..1833 | 99 | | Plus |
BO14269.pep Sequence
Translation from 16 to 1849
> BO14269.pep
MPAAKCGCLKKEARVHVIYVGGTIGMIRNESGVLHTAPKVLARQLQEFPS
CHDRNYTSKDNDGPMMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWK
RIANEVGKTYKSYDGFVILHGTDTLAYSASALAFMLESLNKPVVFTGAQI
PIFEARSDGRENFLGALLIAGNYSIPEVLVFFGNKILRGCRSTKLNSDSF
HALDSPNFAPLGRASVNIEINSRQIFRPCNIKPFSLHSELEKNVALLRIY
PGISASVVQAILKEPTKGVVLQTFGAGNFPVNREDLLDELREAVHRGVII
VNITQCSAGMVANIYETSQGLMEVGVIPGYDMTQEAAFTKLAYVLSKPEW
DIPNKKKVMLLSLRGELTTNKVAKINDIDLIEGVARTLHMSTAMERQQMC
STFYPALVAAAVTEGDVHKLGDLKQYGANLCDTNCDGRSAMHLACFLGKL
NCVCFLISAGCPVNVHDRFNRTPLHEAIDTDNHDIINALLKNGAKLNDQP
LVQAELLRALTERGKIKRLESFRLAGANLTLADRTGRTALHYACQLGNHE
VVDYLLPHYENPYIKDELGMSPIDYAKAANHAHILTLMRFKEKELAKKDP
CSCTQASFLDH
BO14269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8526-PA | 605 | CG8526-PA | 1..605 | 1..605 | 3160 | 100 | Plus |
CG8526-PB | 604 | CG8526-PB | 1..604 | 1..605 | 3143 | 99.8 | Plus |
CG6428-PA | 631 | CG6428-PA | 48..630 | 11..589 | 1549 | 51.5 | Plus |
Ank-PE | 1549 | CG1651-PE | 460..681 | 360..588 | 190 | 26.6 | Plus |
Ank-PD | 1549 | CG1651-PD | 460..681 | 360..588 | 190 | 26.6 | Plus |