Clone BO14270 Report

Search the DGRC for BO14270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptDer-2-RA
Protein status:BO14270.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO14270.3prime Sequence

815 bp (714 high quality bases) assembled on 2006-05-29

> BO14270.3prime
ATGGTCTAGAAAGCTTGCTTGCGGCGCGGCAGCAACAGGCGCCGCTCGAT
TCGCTGGCTCCTCATCCTGTCCATCAGCCGCAATCTCTTCCGGTAGCAGG
GGCTGACCCTCTCCGCCCCAAGGAAATCCGCCAGGTCGATCCTCAGCAGC
CGCCTGGAAGTTGCGTTCGATGTGCTCATTGAAGAGACGTTTCAAAAAGT
AGGGGGTTTTGATCAGTCTGTAGCCGTTGGACAGTGTAGGATAGACGTCC
TCCAGCACGTAGTAGATGTGGCCAACACCCATGCCGATGACATCCACCCA
CACGGTGTTTCCCAGAATCATGGAGCAGCAGAGGAGCACCCACGGAAGGT
ACGGCGCCTGGAAGTTAAGCACCCCGAAGAAATTCATTGGCACCAGTGGA
TTGCGTCGTGACCACACATAGACCAGCATTAATGTGAAGGCCTGGCCCAG
GAACAACAGGTTGACGAAGATTCCGAAGAAGGTCATTAGCACGCCGCCAA
AGATGAACATCATGACAAAGTCGGAGCTGCGTCCGCGGAAAGATCCGTCC
TCCAACATTCGACAATATCGATATGTAAACACCATATTGAAAAAGAAACT
GATGCCTATTGTGCCAAAGTACAGGAATGTGGTGGCCAAGCGCCAGATCT
GGAACTTGCGCACAATCAGCGTGGGATTGAAGTAGAGCTGCAGCGGCGAC
ACCAGGTCCAGGTGCACCGCCAAGGTGGTCAGCACGCAGACCGTGGTGTA
GGCTCGTGTGACCACCGGGATCTCCAGGTAGAACTGCCGCAGGGCATTCA
TGTCGACTGATTACT

BO14270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14899-PA 786 CG14899-RA 1..783 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 269..1052 802..19 3920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483784 193..715 2615 100 Plus
3R 32079331 3R 16483032..16483206 19..193 875 100 Plus
3R 32079331 3R 16483868..16483955 715..802 440 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:01:13 has no hits.

BO14270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:58 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 1..786 18..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:50 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 1..786 18..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:34:48 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..1058 15..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:01 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..1058 15..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:01 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16483263..16483783 194..714 100 <- Plus
3R 16483026..16483206 15..193 98 <- Plus
3R 16483868..16483961 715..808 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:34:48 Download gff for BO14270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12308748..12308928 15..193 98 <- Plus
arm_3R 12308985..12309505 194..714 100 <- Plus
arm_3R 12309590..12309683 715..808 97   Plus

BO14270.5prime Sequence

796 bp (778 high quality bases) assembled on 2006-05-29

> BO14270.5prime
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCG

BO14270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14899-PA 786 CG14899-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 269..1049 16..796 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483784 625..103 2615 100 Minus
3R 32079331 3R 16483035..16483206 796..625 860 100 Minus
3R 32079331 3R 16483868..16483955 103..16 440 100 Minus
Blast to na_te.dros performed 2015-02-12 12:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 3859..3919 560..500 107 63.9 Minus

BO14270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:59 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:51 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:27 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..1049 10..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:39:53 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..1049 10..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:39:53 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16483035..16483206 625..796 100 <- Minus
3R 16483263..16483783 104..624 100 <- Minus
3R 16483868..16483961 10..103 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:27 Download gff for BO14270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12309590..12309683 10..103 97   Minus
arm_3R 12308757..12308928 625..796 100 <- Minus
arm_3R 12308985..12309505 104..624 100 <- Minus

BO14270.complete Sequence

817 bp assembled on 2006-10-11

GenBank Submission: FJ633068

> BO14270.complete
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCGCAAG
CAAGCTTTCTAGACCAT

BO14270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 786 CG14899-PA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 269..1052 16..799 3920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483784 625..103 2615 100 Minus
3R 32079331 3R 16483032..16483206 799..625 875 100 Minus
3R 32079331 3R 16483868..16483955 103..16 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:54:46 has no hits.

BO14270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:59 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 1..786 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:43 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 443..1238 10..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:57 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 270..1052 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:00 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 443..1238 10..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:12 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 270..1052 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:12 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16483028..16483206 625..801 98 <- Minus
3R 16483263..16483783 104..624 100 <- Minus
3R 16483868..16483954 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:57 Download gff for BO14270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12308750..12308928 625..801 98 <- Minus
arm_3R 12308985..12309505 104..624 100 <- Minus
arm_3R 12309590..12309676 17..103 100   Minus

BO14270.pep Sequence

Translation from 16 to 817

> BO14270.pep
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQASFLDH

BO14270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-PA 261 CG14899-PA 1..261 1..261 1391 100 Plus
Der-1-PB 245 CG10908-PB 6..233 7..248 268 29.4 Plus
Der-1-PA 245 CG10908-PA 6..233 7..248 268 29.4 Plus