Clone Sequence Records
BO14270.3prime Sequence
815 bp (714 high quality bases) assembled on 2006-05-29
> BO14270.3prime
ATGGTCTAGAAAGCTTGCTTGCGGCGCGGCAGCAACAGGCGCCGCTCGAT
TCGCTGGCTCCTCATCCTGTCCATCAGCCGCAATCTCTTCCGGTAGCAGG
GGCTGACCCTCTCCGCCCCAAGGAAATCCGCCAGGTCGATCCTCAGCAGC
CGCCTGGAAGTTGCGTTCGATGTGCTCATTGAAGAGACGTTTCAAAAAGT
AGGGGGTTTTGATCAGTCTGTAGCCGTTGGACAGTGTAGGATAGACGTCC
TCCAGCACGTAGTAGATGTGGCCAACACCCATGCCGATGACATCCACCCA
CACGGTGTTTCCCAGAATCATGGAGCAGCAGAGGAGCACCCACGGAAGGT
ACGGCGCCTGGAAGTTAAGCACCCCGAAGAAATTCATTGGCACCAGTGGA
TTGCGTCGTGACCACACATAGACCAGCATTAATGTGAAGGCCTGGCCCAG
GAACAACAGGTTGACGAAGATTCCGAAGAAGGTCATTAGCACGCCGCCAA
AGATGAACATCATGACAAAGTCGGAGCTGCGTCCGCGGAAAGATCCGTCC
TCCAACATTCGACAATATCGATATGTAAACACCATATTGAAAAAGAAACT
GATGCCTATTGTGCCAAAGTACAGGAATGTGGTGGCCAAGCGCCAGATCT
GGAACTTGCGCACAATCAGCGTGGGATTGAAGTAGAGCTGCAGCGGCGAC
ACCAGGTCCAGGTGCACCGCCAAGGTGGTCAGCACGCAGACCGTGGTGTA
GGCTCGTGTGACCACCGGGATCTCCAGGTAGAACTGCCGCAGGGCATTCA
TGTCGACTGATTACT
BO14270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14899-PA | 786 | CG14899-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 269..1052 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483262..16483784 | 193..715 | 2615 | 100 | Plus |
3R | 32079331 | 3R | 16483032..16483206 | 19..193 | 875 | 100 | Plus |
3R | 32079331 | 3R | 16483868..16483955 | 715..802 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:01:13 has no hits.
BO14270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:58 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:50 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:34:48 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..1058 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:01 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..1058 | 15..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:01 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483263..16483783 | 194..714 | 100 | <- | Plus |
3R | 16483026..16483206 | 15..193 | 98 | <- | Plus |
3R | 16483868..16483961 | 715..808 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:34:48 Download gff for
BO14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12308748..12308928 | 15..193 | 98 | <- | Plus |
arm_3R | 12308985..12309505 | 194..714 | 100 | <- | Plus |
arm_3R | 12309590..12309683 | 715..808 | 97 | | Plus |
BO14270.5prime Sequence
796 bp (778 high quality bases) assembled on 2006-05-29
> BO14270.5prime
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCG
BO14270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14899-PA | 786 | CG14899-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 269..1049 | 16..796 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483262..16483784 | 625..103 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 16483035..16483206 | 796..625 | 860 | 100 | Minus |
3R | 32079331 | 3R | 16483868..16483955 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3859..3919 | 560..500 | 107 | 63.9 | Minus |
BO14270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:22:59 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:51 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:27 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..1049 | 10..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:39:53 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..1049 | 10..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:39:53 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483035..16483206 | 625..796 | 100 | <- | Minus |
3R | 16483263..16483783 | 104..624 | 100 | <- | Minus |
3R | 16483868..16483961 | 10..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:27 Download gff for
BO14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12309590..12309683 | 10..103 | 97 | | Minus |
arm_3R | 12308757..12308928 | 625..796 | 100 | <- | Minus |
arm_3R | 12308985..12309505 | 104..624 | 100 | <- | Minus |
BO14270.complete Sequence
817 bp assembled on 2006-10-11
GenBank Submission: FJ633068
> BO14270.complete
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCGCAAG
CAAGCTTTCTAGACCAT
BO14270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 786 | CG14899-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 269..1052 | 16..799 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483262..16483784 | 625..103 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 16483032..16483206 | 799..625 | 875 | 100 | Minus |
3R | 32079331 | 3R | 16483868..16483955 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:54:46 has no hits.
BO14270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:59 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:43 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 443..1238 | 10..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:57 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 270..1052 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:00 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 443..1238 | 10..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:12 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 270..1052 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:12 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483028..16483206 | 625..801 | 98 | <- | Minus |
3R | 16483263..16483783 | 104..624 | 100 | <- | Minus |
3R | 16483868..16483954 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:57 Download gff for
BO14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12308750..12308928 | 625..801 | 98 | <- | Minus |
arm_3R | 12308985..12309505 | 104..624 | 100 | <- | Minus |
arm_3R | 12309590..12309676 | 17..103 | 100 | | Minus |
BO14270.pep Sequence
Translation from 16 to 817
> BO14270.pep
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQASFLDH
BO14270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-PA | 261 | CG14899-PA | 1..261 | 1..261 | 1391 | 100 | Plus |
Der-1-PB | 245 | CG10908-PB | 6..233 | 7..248 | 268 | 29.4 | Plus |
Der-1-PA | 245 | CG10908-PA | 6..233 | 7..248 | 268 | 29.4 | Plus |