Clone BO14274 Report

Search the DGRC for BO14274

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG33098-RC
Protein status:BO14274.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO14274.5prime Sequence

629 bp (628 high quality bases) assembled on 2006-05-29

> BO14274.5prime
GAAGTTATCAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATC
TGGAGCGACGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACT
CCCCAGCCAGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAA
TGAGATATTTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATA
CGCTGCCCGAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTG
GACATTGCCAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATAC
GGACTGCGATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGG
CGCTGGGCAACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAG
GCCAAGGAGCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCG
CACCCAGGAACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAAT
GGGATGACCATGGCACGGGCAAGATCGACGAACGCAAGTGGGTGCTACCG
GGTAGAGTGGACTACCACAGTGATAGTCTCCATTTTGAACACTCCCCAGA
ATCTATGAAGAGCGCAAGCTTTCTAGACC

BO14274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG33098-PC 600 CG33098-RC 1..597 17..613 2985 100 Plus
CG33098-PB 693 CG33098-RB 1..521 17..537 2605 100 Plus
CG33098-PD 495 CG33098-RD 1..323 215..537 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33098-RC 902 CG33098-RC 32..628 17..613 2985 100 Plus
CG33098-RF 1182 CG33098-RF 165..685 17..537 2605 100 Plus
CG33098-RE 1169 CG33098-RE 152..672 17..537 2605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12387979..12388311 281..613 1665 100 Plus
3R 32079331 3R 12387705..12387928 59..282 1120 100 Plus
3R 32079331 3R 12387596..12387637 17..58 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:54:33 has no hits.

BO14274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:04 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33098-PC 1..600 17..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:58 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33098-PC 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:29 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 23..637 8..620 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:06:18 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 23..637 8..620 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:18 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12387587..12387637 8..58 94 -> Plus
3R 12387705..12387926 59..280 100 -> Plus
3R 12387979..12388320 281..620 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:29 Download gff for BO14274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8213427..8213648 59..280 100 -> Plus
arm_3R 8213309..8213359 8..58 94 -> Plus
arm_3R 8213701..8214042 281..620 98   Plus

BO14274.complete Sequence

631 bp assembled on 2007-10-29

GenBank Submission: FJ633069

> BO14274.complete
GAAGTTATCAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATC
TGGAGCGACGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACT
CCCCAGCCAGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAA
TGAGATATTTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATA
CGCTGCCCGAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTG
GACATTGCCAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATAC
GGACTGCGATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGG
CGCTGGGCAACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAG
GCCAAGGAGCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCG
CACCCAGGAACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAAT
GGGATGACCATGGCACGGGCAAGATCGACGAACGCAAGTGGGTGCTACCG
GGTAGAGTGGACTACCACAGTGATAGTCTCCATTTTGAACACTCCCCAGA
ATCTATGAAGAGCGCAAGCTTTCTAGACCAT

BO14274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG33098-RC 600 CG33098-PC 1..597 17..613 2985 100 Plus
CG33098-RF 693 CG33098-PF 1..521 17..537 2605 100 Plus
CG33098-RE 693 CG33098-PE 1..521 17..537 2605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33098-RC 902 CG33098-RC 32..628 17..613 2985 100 Plus
CG33098-RF 1182 CG33098-RF 165..685 17..537 2605 100 Plus
CG33098-RE 1169 CG33098-RE 152..672 17..537 2605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12387979..12388311 281..613 1665 100 Plus
3R 32079331 3R 12387705..12387928 59..282 1120 100 Plus
3R 32079331 3R 12387596..12387637 17..58 210 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:51 has no hits.

BO14274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:24 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:37 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 23..637 8..620 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:46 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 32..628 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:10 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 32..628 17..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:55 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
CG33098-RC 32..628 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:55 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12387596..12387637 17..58 100 -> Plus
3R 12387705..12387926 59..280 100 -> Plus
3R 12387979..12388311 281..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:46 Download gff for BO14274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8213318..8213359 17..58 100 -> Plus
arm_3R 8213427..8213648 59..280 100 -> Plus
arm_3R 8213701..8214033 281..615 99   Plus

BO14274.pep Sequence

Translation from 16 to 631

> BO14274.pep
MSMDPSVSLEDLERRRRRASSARKQSHTPQPASHLADSEAMAVINEIFNP
TLKLPESSGHYTLPEEMRADDNVAPHELDIAKLAELKEVFSLFDTDCDGL
ISKDDLRFTYTALGNEPNEQLLEQMMQEAKEPLDYEAFVRLMSRRTQELD
PEDVLLEAWSKWDDHGTGKIDERKWVLPGRVDYHSDSLHFEHSPESMKSA
SFLDH

BO14274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33098-PC 199 CG33098-PC 1..199 1..199 1041 100 Plus
CG33098-PF 230 CG33098-PF 1..198 1..200 901 88.5 Plus
CG33098-PE 230 CG33098-PE 1..198 1..200 901 88.5 Plus
CG33098-PB 230 CG33098-PB 1..198 1..200 901 88.5 Plus
CG33098-PD 164 CG33098-PD 1..132 67..200 567 82.8 Plus