Clone Sequence Records
BO14274.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-05-29
> BO14274.5prime
GAAGTTATCAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATC
TGGAGCGACGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACT
CCCCAGCCAGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAA
TGAGATATTTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATA
CGCTGCCCGAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTG
GACATTGCCAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATAC
GGACTGCGATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGG
CGCTGGGCAACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAG
GCCAAGGAGCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCG
CACCCAGGAACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAAT
GGGATGACCATGGCACGGGCAAGATCGACGAACGCAAGTGGGTGCTACCG
GGTAGAGTGGACTACCACAGTGATAGTCTCCATTTTGAACACTCCCCAGA
ATCTATGAAGAGCGCAAGCTTTCTAGACC
BO14274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33098-PC | 600 | CG33098-RC | 1..597 | 17..613 | 2985 | 100 | Plus |
CG33098-PB | 693 | CG33098-RB | 1..521 | 17..537 | 2605 | 100 | Plus |
CG33098-PD | 495 | CG33098-RD | 1..323 | 215..537 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33098-RC | 902 | CG33098-RC | 32..628 | 17..613 | 2985 | 100 | Plus |
CG33098-RF | 1182 | CG33098-RF | 165..685 | 17..537 | 2605 | 100 | Plus |
CG33098-RE | 1169 | CG33098-RE | 152..672 | 17..537 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12387979..12388311 | 281..613 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 12387705..12387928 | 59..282 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 12387596..12387637 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:54:33 has no hits.
BO14274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:04 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-PC | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:58 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-PC | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:29 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 23..637 | 8..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:06:18 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 23..637 | 8..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:18 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12387587..12387637 | 8..58 | 94 | -> | Plus |
3R | 12387705..12387926 | 59..280 | 100 | -> | Plus |
3R | 12387979..12388320 | 281..620 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:29 Download gff for
BO14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8213427..8213648 | 59..280 | 100 | -> | Plus |
arm_3R | 8213309..8213359 | 8..58 | 94 | -> | Plus |
arm_3R | 8213701..8214042 | 281..620 | 98 | | Plus |
BO14274.complete Sequence
631 bp assembled on 2007-10-29
GenBank Submission: FJ633069
> BO14274.complete
GAAGTTATCAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATC
TGGAGCGACGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACT
CCCCAGCCAGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAA
TGAGATATTTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATA
CGCTGCCCGAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTG
GACATTGCCAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATAC
GGACTGCGATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGG
CGCTGGGCAACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAG
GCCAAGGAGCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCG
CACCCAGGAACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAAT
GGGATGACCATGGCACGGGCAAGATCGACGAACGCAAGTGGGTGCTACCG
GGTAGAGTGGACTACCACAGTGATAGTCTCCATTTTGAACACTCCCCAGA
ATCTATGAAGAGCGCAAGCTTTCTAGACCAT
BO14274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33098-RC | 600 | CG33098-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
CG33098-RF | 693 | CG33098-PF | 1..521 | 17..537 | 2605 | 100 | Plus |
CG33098-RE | 693 | CG33098-PE | 1..521 | 17..537 | 2605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33098-RC | 902 | CG33098-RC | 32..628 | 17..613 | 2985 | 100 | Plus |
CG33098-RF | 1182 | CG33098-RF | 165..685 | 17..537 | 2605 | 100 | Plus |
CG33098-RE | 1169 | CG33098-RE | 152..672 | 17..537 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12387979..12388311 | 281..613 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 12387705..12387928 | 59..282 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 12387596..12387637 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:51 has no hits.
BO14274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:24 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:37 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 23..637 | 8..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:46 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 32..628 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:10 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 32..628 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:55 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33098-RC | 32..628 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:55 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12387596..12387637 | 17..58 | 100 | -> | Plus |
3R | 12387705..12387926 | 59..280 | 100 | -> | Plus |
3R | 12387979..12388311 | 281..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:46 Download gff for
BO14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8213318..8213359 | 17..58 | 100 | -> | Plus |
arm_3R | 8213427..8213648 | 59..280 | 100 | -> | Plus |
arm_3R | 8213701..8214033 | 281..615 | 99 | | Plus |
BO14274.pep Sequence
Translation from 16 to 631
> BO14274.pep
MSMDPSVSLEDLERRRRRASSARKQSHTPQPASHLADSEAMAVINEIFNP
TLKLPESSGHYTLPEEMRADDNVAPHELDIAKLAELKEVFSLFDTDCDGL
ISKDDLRFTYTALGNEPNEQLLEQMMQEAKEPLDYEAFVRLMSRRTQELD
PEDVLLEAWSKWDDHGTGKIDERKWVLPGRVDYHSDSLHFEHSPESMKSA
SFLDH
BO14274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33098-PC | 199 | CG33098-PC | 1..199 | 1..199 | 1041 | 100 | Plus |
CG33098-PF | 230 | CG33098-PF | 1..198 | 1..200 | 901 | 88.5 | Plus |
CG33098-PE | 230 | CG33098-PE | 1..198 | 1..200 | 901 | 88.5 | Plus |
CG33098-PB | 230 | CG33098-PB | 1..198 | 1..200 | 901 | 88.5 | Plus |
CG33098-PD | 164 | CG33098-PD | 1..132 | 67..200 | 567 | 82.8 | Plus |