Clone BO14275 Report

Search the DGRC for BO14275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptfh-RA
Protein status:BO14275.pep: validated full length
Sequenced Size:604

Clone Sequence Records

BO14275.3prime Sequence

602 bp (601 high quality bases) assembled on 2006-05-29

> BO14275.3prime
ATGGTCTAGAAAGCTTGCACTACAGTAGGGCAGGCGTAGGAAGTCCACGG
ACTGTGACTTCAGTATGCCGGGTATCTCCTGCTGCAACAGTTCGTGCAGC
GACTGACCACTGTGCTTGTAGATCCATCTGCCCGCCGCCACAGTGCCGAC
GAAATCGTATCGCTTGGGACCGCTGGTGGGCGAACTGAGCCAGATCTGCT
TGTTGGGCGTCTGCCGGTTGATCACATAGGTGCCGTGCTGTCCTCCCAGG
TTCACGGTTAGCACGCCATCGCTGTAAGCCACATCCGTGCCCTGCAGCTC
GGAGGCGTTCTCCGTCAGCTCCTCGAAGTAGTCGCACAGTGCGTCCAGGG
TGTCGGAGCACACACGCTCGTAGGTGGCGCCGTCCAATGTGGATTCCGTC
TCAATTTGACTGCTAAACAATCGCCGGTTGGCAGTGAATTCCTCGCATTG
AATAGCAACTGCGGCTATCGCTGGTGTGCTGGGCAGGATCACTTGGCTGG
CGTGTGCTTGGGGCTTTGACCACCTGCCCATGGTGGCCAAGCATGCCCGA
CCAACGATCGAACGGACCATCAAACGACCGGCAAACATGTCGACTGATAA
CT

BO14275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8971-PA 573 fh-RA 1..570 588..19 2825 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
fh-RA 923 CG8971-RA 60..629 588..19 2835 99.8 Minus
fh-RB 927 CG8971-RB 60..633 588..19 2785 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9148694..9149012 270..588 1595 100 Plus
X 23542271 X 9148374..9148625 19..270 1245 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:57:05 has no hits.

BO14275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:23:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:00 Download gff for BO14275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8971-PA 1..573 15..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:57 Download gff for BO14275.3prime
Subject Subject Range Query Range Percent Splice Strand
fh-RA 60..634 11..588 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:46 Download gff for BO14275.3prime
Subject Subject Range Query Range Percent Splice Strand
fh-RA 60..634 11..588 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:46 Download gff for BO14275.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9148369..9148625 11..270 98 <- Plus
X 9148695..9149012 271..588 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:57 Download gff for BO14275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9042402..9042658 11..270 98 <- Plus
arm_X 9042728..9043045 271..588 100   Plus

BO14275.5prime Sequence

602 bp (601 high quality bases) assembled on 2006-05-29

> BO14275.5prime
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTGCAAGCTTTCTAGA
CC

BO14275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8971-PA 573 fh-RA 1..570 17..586 2825 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
fh-RA 923 CG8971-RA 60..629 17..586 2835 99.8 Plus
fh-RB 927 CG8971-RB 60..633 17..586 2785 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9148694..9149012 335..17 1595 100 Minus
X 23542271 X 9148374..9148625 586..335 1245 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 19:54:20 has no hits.

BO14275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:23:06 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:01 Download gff for BO14275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8971-PA 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:27 Download gff for BO14275.5prime
Subject Subject Range Query Range Percent Splice Strand
fh-RA 60..634 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:39 Download gff for BO14275.5prime
Subject Subject Range Query Range Percent Splice Strand
fh-RA 60..634 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:39 Download gff for BO14275.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9148369..9148625 335..594 98 <- Minus
X 9148695..9149012 17..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:27 Download gff for BO14275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9042402..9042658 335..594 98 <- Minus
arm_X 9042728..9043045 17..334 100   Minus

BO14275.complete Sequence

604 bp assembled on 2006-10-11

GenBank Submission: FJ633070

> BO14275.complete
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTGCAAGCTTTCTAGA
CCAT

BO14275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
fh-RA 573 CG8971-PA 1..570 17..586 2835 99.8 Plus
fh-RB 573 CG8971-PB 1..573 17..585 2755 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
fh-RA 923 CG8971-RA 60..629 17..586 2835 99.8 Plus
fh-RB 927 CG8971-RB 60..633 17..586 2760 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9148694..9149012 335..17 1595 100 Minus
X 23542271 X 9148374..9148625 586..335 1245 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:15 has no hits.

BO14275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:03 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
fh-RA 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:45 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
fh-RA 48..622 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:30 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
fh-RA 66..629 23..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:05 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
fh-RA 48..622 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:04 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
fh-RA 66..629 23..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:04 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
X 9148372..9148625 335..588 98 <- Minus
X 9148695..9149006 23..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:30 Download gff for BO14275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9042405..9042658 335..588 98 <- Minus
arm_X 9042728..9043039 23..334 100   Minus

BO14275.pep Sequence

Translation from 16 to 604

> BO14275.pep
MFAGRLMVRSIVGRACLATMGRWSKPQAHASQVILPSTPAIAAVAIQCEE
FTANRRLFSSQIETESTLDGATYERVCSDTLDALCDYFEELTENASELQG
TDVAYSDGVLTVNLGGQHGTYVINRQTPNKQIWLSSPTSGPKRYDFVGTV
AAGRWIYKHSGQSLHELLQQEIPGILKSQSVDFLRLPYCSASFLDH

BO14275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
fh-PA 190 CG8971-PA 1..190 1..190 989 100 Plus
fh-PB 190 CG8971-PB 1..108 1..108 542 99.1 Plus