Clone Sequence Records
BO14275.3prime Sequence
602 bp (601 high quality bases) assembled on 2006-05-29
> BO14275.3prime
ATGGTCTAGAAAGCTTGCACTACAGTAGGGCAGGCGTAGGAAGTCCACGG
ACTGTGACTTCAGTATGCCGGGTATCTCCTGCTGCAACAGTTCGTGCAGC
GACTGACCACTGTGCTTGTAGATCCATCTGCCCGCCGCCACAGTGCCGAC
GAAATCGTATCGCTTGGGACCGCTGGTGGGCGAACTGAGCCAGATCTGCT
TGTTGGGCGTCTGCCGGTTGATCACATAGGTGCCGTGCTGTCCTCCCAGG
TTCACGGTTAGCACGCCATCGCTGTAAGCCACATCCGTGCCCTGCAGCTC
GGAGGCGTTCTCCGTCAGCTCCTCGAAGTAGTCGCACAGTGCGTCCAGGG
TGTCGGAGCACACACGCTCGTAGGTGGCGCCGTCCAATGTGGATTCCGTC
TCAATTTGACTGCTAAACAATCGCCGGTTGGCAGTGAATTCCTCGCATTG
AATAGCAACTGCGGCTATCGCTGGTGTGCTGGGCAGGATCACTTGGCTGG
CGTGTGCTTGGGGCTTTGACCACCTGCCCATGGTGGCCAAGCATGCCCGA
CCAACGATCGAACGGACCATCAAACGACCGGCAAACATGTCGACTGATAA
CT
BO14275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8971-PA | 573 | fh-RA | 1..570 | 588..19 | 2825 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fh-RA | 923 | CG8971-RA | 60..629 | 588..19 | 2835 | 99.8 | Minus |
fh-RB | 927 | CG8971-RB | 60..633 | 588..19 | 2785 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9148694..9149012 | 270..588 | 1595 | 100 | Plus |
X | 23542271 | X | 9148374..9148625 | 19..270 | 1245 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:05 has no hits.
BO14275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:23:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:00 Download gff for
BO14275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8971-PA | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:57 Download gff for
BO14275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 60..634 | 11..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:46 Download gff for
BO14275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 60..634 | 11..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:46 Download gff for
BO14275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9148369..9148625 | 11..270 | 98 | <- | Plus |
X | 9148695..9149012 | 271..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:57 Download gff for
BO14275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9042402..9042658 | 11..270 | 98 | <- | Plus |
arm_X | 9042728..9043045 | 271..588 | 100 | | Plus |
BO14275.5prime Sequence
602 bp (601 high quality bases) assembled on 2006-05-29
> BO14275.5prime
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTGCAAGCTTTCTAGA
CC
BO14275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8971-PA | 573 | fh-RA | 1..570 | 17..586 | 2825 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fh-RA | 923 | CG8971-RA | 60..629 | 17..586 | 2835 | 99.8 | Plus |
fh-RB | 927 | CG8971-RB | 60..633 | 17..586 | 2785 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9148694..9149012 | 335..17 | 1595 | 100 | Minus |
X | 23542271 | X | 9148374..9148625 | 586..335 | 1245 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:54:20 has no hits.
BO14275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:23:06 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:01 Download gff for
BO14275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8971-PA | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:27 Download gff for
BO14275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 60..634 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:39 Download gff for
BO14275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 60..634 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:39 Download gff for
BO14275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9148369..9148625 | 335..594 | 98 | <- | Minus |
X | 9148695..9149012 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:27 Download gff for
BO14275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9042402..9042658 | 335..594 | 98 | <- | Minus |
arm_X | 9042728..9043045 | 17..334 | 100 | | Minus |
BO14275.complete Sequence
604 bp assembled on 2006-10-11
GenBank Submission: FJ633070
> BO14275.complete
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTGCAAGCTTTCTAGA
CCAT
BO14275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fh-RA | 573 | CG8971-PA | 1..570 | 17..586 | 2835 | 99.8 | Plus |
fh-RB | 573 | CG8971-PB | 1..573 | 17..585 | 2755 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fh-RA | 923 | CG8971-RA | 60..629 | 17..586 | 2835 | 99.8 | Plus |
fh-RB | 927 | CG8971-RB | 60..633 | 17..586 | 2760 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9148694..9149012 | 335..17 | 1595 | 100 | Minus |
X | 23542271 | X | 9148374..9148625 | 586..335 | 1245 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:15 has no hits.
BO14275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:03 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:45 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 48..622 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:30 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 66..629 | 23..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:05 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 48..622 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:04 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fh-RA | 66..629 | 23..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:04 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9148372..9148625 | 335..588 | 98 | <- | Minus |
X | 9148695..9149006 | 23..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:30 Download gff for
BO14275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9042405..9042658 | 335..588 | 98 | <- | Minus |
arm_X | 9042728..9043039 | 23..334 | 100 | | Minus |
BO14275.pep Sequence
Translation from 16 to 604
> BO14275.pep
MFAGRLMVRSIVGRACLATMGRWSKPQAHASQVILPSTPAIAAVAIQCEE
FTANRRLFSSQIETESTLDGATYERVCSDTLDALCDYFEELTENASELQG
TDVAYSDGVLTVNLGGQHGTYVINRQTPNKQIWLSSPTSGPKRYDFVGTV
AAGRWIYKHSGQSLHELLQQEIPGILKSQSVDFLRLPYCSASFLDH
BO14275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fh-PA | 190 | CG8971-PA | 1..190 | 1..190 | 989 | 100 | Plus |
fh-PB | 190 | CG8971-PB | 1..108 | 1..108 | 542 | 99.1 | Plus |