Clone Sequence Records
BO14276.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-29
> BO14276.3prime
ATGGTCTAGAAAGCTTGCGCACGGTAATTTCGAACGCTTCATAGGTTGCT
TGCGGTAAGCACCACCAAGTACTTTTCTGGACGAGATCCGTTTCACCTTG
AACAATCGACCATCTATCTCGGCACATGAGAAAAACTTGGTGCGGGCCGG
AAAATAGATCGTGACAGTTCCGCACTTGGTACAGTTCACAGCGCGATCTC
CGTAGAGAGTGCTTTTCCGTTTATGGATCCTTGCCCTTTTCCTTTTTTTC
ACTGATCTCGATGCTTTGCATTCTGGCTGCTTATATTTATGTTCCCGATT
TAAAATCCTCGAACTACTGCAGCGCTGGGACTCTTGAACCTCTTTGGTTT
CTTTCACATTTTCCTCAACGTTTTCAGGTGATTGCGGTAATGGAGGACCT
CCTTCATCAGTTGCGGCTTGTGTTTCTACACTTGGAAGCGGAAAATTTTC
TTGGCTCATGTCGACTGATAACT
BO14276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 444 | CG30039-RA | 1..440 | 459..20 | 2175 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 129..568 | 459..20 | 2185 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051136..12051555 | 20..439 | 2085 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:55:43 has no hits.
BO14276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:06 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:03 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:05 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:23 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 15..459 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:23 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051131..12051554 | 15..438 | 99 | <- | Plus |
| 2R | 12051607..12051627 | 439..459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:05 Download gff for
BO14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938636..7939059 | 15..438 | 99 | <- | Plus |
| arm_2R | 7939112..7939132 | 439..459 | 100 | | Plus |
BO14276.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-29
> BO14276.5prime
GAAGTTATCAGTCGACATGAGCCAAGAAAATTTTCCGCTTCCAAGTGTAG
AAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCT
GAAAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCA
GCGCTGCAGTAGTTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGC
CAGAATGCAAAGCATCGAGATCAGTGAAAAAAAGGAAAAGGGCAAGGATC
CATAAACGGAAAAGCACTCTCTACGGAGATCGCGCTGTGAACTGTACCAA
GTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTTTTTCTCAT
GTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGA
AAAGTACTTGGTGGTGCTTACCGCAAGCAACCTATGAAGCGTTCGAAATT
ACCGTGCGCAAGCTTTCTAGACC
BO14276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 444 | CG30039-RA | 1..440 | 17..456 | 2175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 129..568 | 17..456 | 2185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051136..12051555 | 456..37 | 2085 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:32 has no hits.
BO14276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:08 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:04 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:36:48 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:10 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 17..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:10 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051131..12051554 | 38..461 | 99 | <- | Minus |
| 2R | 12051607..12051627 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:36:48 Download gff for
BO14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938636..7939059 | 38..461 | 99 | <- | Minus |
| arm_2R | 7939112..7939132 | 17..37 | 100 | | Minus |
BO14276.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ633071
> BO14276.complete
GAAGTTATCAGTCGACATGAGCCAAGAAAATTTTCCGCTTCCAAGTGTAG
AAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCT
GAAAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCA
GCGCTGCAGTAGTTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGC
CAGAATGCAAAGCATCGAGATCAGTGAAAAAAAGGAAAAGGGCAAGGATC
CATAAACGGAAAAGCACTCTCTACGGAGATCGCGCTGTGAACTGTACCAA
GTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTTTTTCTCAT
GTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGA
AAAGTACTTGGTGGTGCTTACCGCAAGCAACCTATGAAGCGTTCGAAATT
ACCGTGCGCAAGCTTTCTAGACCAT
BO14276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 444 | CG30039-PA | 1..440 | 17..456 | 2185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 129..568 | 17..456 | 2185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051136..12051555 | 456..37 | 2085 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:42:15 has no hits.
BO14276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:56 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:38 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:59 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..568 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:56 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..572 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:24 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..568 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:24 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051133..12051554 | 38..459 | 99 | <- | Minus |
| 2R | 12051607..12051627 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:59 Download gff for
BO14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938638..7939059 | 38..459 | 99 | <- | Minus |
| arm_2R | 7939112..7939132 | 17..37 | 100 | | Minus |
BO14276.pep Sequence
Translation from 16 to 475
> BO14276.pep
MSQENFPLPSVETQAATDEGGPPLPQSPENVEENVKETKEVQESQRCSSS
RILNREHKYKQPECKASRSVKKRKRARIHKRKSTLYGDRAVNCTKCGTVT
IYFPARTKFFSCAEIDGRLFKVKRISSRKVLGGAYRKQPMKRSKLPCASF
LDH
BO14276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 147 | CG30039-PA | 1..147 | 1..147 | 770 | 100 | Plus |
