Clone Sequence Records
BO14278.3prime Sequence
809 bp (728 high quality bases) assembled on 2006-05-29
> BO14278.3prime
ATGGTCTAGAAAGCTTGCAACGTCGGCCGGTTTGAACTGCGGATTGTGCG
AGCGTGCCATCTTGGCGCGCAGCCACTCGTCCGCGTGACGCTGCTTAATG
TGGACATACATATTGGAGCGGGAACGGCACTCCTTGGGGCAATGCGGACA
GTTGTACAGCTGCAGGCCCGTGTGGATGGCCATGTGCTCGTCCAGGTTGC
GCTGCTGCTTGAAGGTTTTCTCGCAGAACGTGCACTGCAGATTGGTGGTC
AGCTTGTGGGCATATTTGACGTGACCGCGGAGCGCTGTGCGCGATGTGCA
GGTCTTGCCACAATGCGGACACACGGTGTCCGTGCTGTCGTGTGTGAAGC
GGTGCAGGCGCAAGCTGTGCTCGTTCTTCAGCCAAACACGGCAGATGGGG
CACTCCACAGCCGGGGCCACGACGCCCTGGTGCTCCAGCAAATGGCGCTC
GAAGGAGGGCTTGAACTTGAACTTCTTCCCGCAAATGTCGCAAACGTGAC
GATGCAGGTCTTCGTGGATGGATTGGATGTGCCTTCGCAGGCGGTGTACA
TTGGCAAAGCTTTTGCAGCAGATCTCGCAGGTGTGCTCCAGTTGATCGGT
GTCGTGCTTGGCCAGATGATTGGCCATACGGCGCTCGCTGCTGAAGGTGC
GTTCGCACTTGGGGCACGGGAACTTGAGCACCTTGCCGATTTGAGCCACC
TTGTTGTGCACCGTCTCGATATGAGTGGCCAAGTAATCCTGCGAGTTGAG
CGACTTCTTGCAAATGGTGCAGGTAAATAGCTTGGGGTTGATATGTTTGC
GGATGTGGT
BO14278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-PA | 1746 | CG2889-RA | 953..1743 | 809..19 | 3930 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-RB | 2098 | CG2889-RB | 1255..2045 | 809..19 | 3940 | 99.9 | Minus |
CG2889-RA | 2173 | CG2889-RA | 1330..2120 | 809..19 | 3940 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10476606..10477148 | 561..19 | 2715 | 100 | Minus |
X | 23542271 | X | 10476183..10476395 | 772..560 | 1050 | 99.5 | Minus |
X | 23542271 | X | 10476089..10476125 | 809..773 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:30:29 has no hits.
BO14278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:10 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-PA | 953..1746 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:08 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-PA | 953..1746 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:22 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 1330..2127 | 12..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:00 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 1330..2127 | 12..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:00 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10476089..10476125 | 773..809 | 100 | -> | Minus |
X | 10476183..10476395 | 560..772 | 99 | -> | Minus |
X | 10476608..10477155 | 12..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:22 Download gff for
BO14278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10370122..10370158 | 773..809 | 100 | -> | Minus |
arm_X | 10370216..10370428 | 560..772 | 99 | -> | Minus |
arm_X | 10370641..10371188 | 12..559 | 99 | | Minus |
BO14278.5prime Sequence
875 bp (814 high quality bases) assembled on 2006-05-29
> BO14278.5prime
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCCA
AGAGCTACGAGAAGGCCATTGCTAGCTACATGAGTGCAAGCTGCGACCTG
TGCGAATTTAGTGCTCCCTACCTAT
BO14278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-PA | 1746 | CG2889-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-RB | 2098 | CG2889-RB | 299..1161 | 13..875 | 4300 | 99.9 | Plus |
CG2889-RA | 2173 | CG2889-RA | 374..1236 | 13..875 | 4300 | 99.9 | Plus |
CG12219-RA | 2018 | CG12219-RA | 261..350 | 149..238 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10475200..10475622 | 138..560 | 2115 | 100 | Plus |
X | 23542271 | X | 10475680..10475995 | 560..875 | 1580 | 100 | Plus |
X | 23542271 | X | 10475014..10475140 | 13..139 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:35:52 has no hits.
BO14278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:11 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:09 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:28 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 367..1236 | 4..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:37 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 367..1236 | 4..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:37 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10475007..10475140 | 4..139 | 96 | -> | Plus |
X | 10475202..10475622 | 140..560 | 100 | -> | Plus |
X | 10475681..10475995 | 561..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:28 Download gff for
BO14278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10369714..10370028 | 561..875 | 100 | | Plus |
arm_X | 10369040..10369173 | 4..139 | 96 | -> | Plus |
arm_X | 10369235..10369655 | 140..560 | 100 | -> | Plus |
BO14278.complete Sequence
1777 bp assembled on 2007-03-23
GenBank Submission: FJ638726
> BO14278.complete
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCCA
AGAGCTACGAGAAGGCCATTGCTAGCTACATGAGTGCAAGCTGCGACCTG
TGCGAATTTAGTGCTCCCTACCTATCCGAATTGAAGACCCACTTCCTGGA
GGTGCACCAGCGCGAGTACTACATCAAGTGCTGCGGCAAAGTCTTTACAC
GCGCTTCCAAGCTGATGGACCACATCCGCAAACATATCAACCCCAAGCTA
TTTACCTGCACCATTTGCAAGAAGTCGCTCAACTCGCAGGACTACTTGGC
CACTCATATCGAGACGGTGCACAACAAGGTGGCTCAAATCGGCAAGGTGC
TCAAGTTCCCGTGCCCCAAGTGCGAACGCACCTTCAGCAGCGAGCGCCGT
ATGGCCAATCATCTGGCCAAGCACGACACCGATCAACTGGAGCACACCTG
CGAGATCTGCTGCAAAAGCTTTGCCAATGTACACCGCCTGCGAAGGCACA
TCCAATCCATCCACGAAGACCTGCATCGTCACGTTTGCGACATTTGCGGG
AAGAAGTTCAAGTTCAAGCCCTCCTTCGAGCGCCATTTGCTGGAGCACCA
GGGCGTCGTGGCCCCGGCTGTGGAGTGCCCCATCTGCCGTGTTTGGCTGA
AGAACGAGCACAGCTTGCGCCTGCACCGCTTCACACACGACAGCACGGAC
ACCGTGTGTCCGCATTGTGGCAAGACCTGCACATCGCGCACAGCGCTCCG
CGGTCACGTCAAATATGCCCACAAGCTGACCACCAATCTGCAGTGCACGT
TCTGCGAGAAAACCTTCAAGCAGCAGCGCAACCTGGACGAGCACATGGCC
ATCCACACGGGCCTGCAGCTGTACAACTGTCCGCATTGCCCCAAGGAGTG
CCGTTCCCGCTCCAATATGTATGTCCACATTAAGCAGCGTCACGCGGACG
AGTGGCTGCGCGCCAAGATGGCACGCTCGCACAATCCGCAGTTCAAACCG
GCCGACGTTGCAAGCTTTCTAGACCAT
BO14278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-RB | 1746 | CG2889-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
CG2889-RA | 1746 | CG2889-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
CG12219-RA | 1689 | CG12219-PA | 175..264 | 149..238 | 180 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-RB | 2098 | CG2889-RB | 299..2045 | 13..1759 | 8720 | 99.9 | Plus |
CG2889-RA | 2173 | CG2889-RA | 374..2120 | 13..1759 | 8720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10476606..10477148 | 1217..1759 | 2715 | 100 | Plus |
X | 23542271 | X | 10475680..10476125 | 560..1005 | 2230 | 100 | Plus |
X | 23542271 | X | 10475200..10475622 | 138..560 | 2115 | 100 | Plus |
X | 23542271 | X | 10476183..10476395 | 1006..1218 | 1065 | 100 | Plus |
X | 23542271 | X | 10475014..10475140 | 13..139 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:57:21 has no hits.
BO14278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:23 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 1..1746 | 17..1763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:35 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 367..2127 | 4..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:50 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 378..2120 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:24 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 367..2127 | 4..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:02 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2889-RA | 378..2120 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:02 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10475018..10475140 | 17..139 | 100 | -> | Plus |
X | 10475202..10475622 | 140..560 | 100 | -> | Plus |
X | 10475681..10476125 | 561..1005 | 100 | -> | Plus |
X | 10476183..10476395 | 1006..1218 | 100 | -> | Plus |
X | 10476608..10477148 | 1219..1761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:50 Download gff for
BO14278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10369235..10369655 | 140..560 | 100 | -> | Plus |
arm_X | 10369051..10369173 | 17..139 | 100 | -> | Plus |
arm_X | 10369714..10370158 | 561..1005 | 100 | -> | Plus |
arm_X | 10370216..10370428 | 1006..1218 | 100 | -> | Plus |
arm_X | 10370641..10371181 | 1219..1761 | 99 | | Plus |
BO14278.pep Sequence
Translation from 16 to 1777
> BO14278.pep
MICRLCLRCLSPGSAVFLFETDDTLAETRLVKMIAKFLQLEILPDDGIST
SVCTECCEHLEDFNGFWQLVEQKQCSLKKEFLTVDVDCAAMKWTGGVDVD
VNIDELPLAAGDMDEKPLDLHNLSLLGSVLDVNVDSVEVREPIKEQLPCE
EEEDEKPCLQASDSEPEVTEGQPESESDSSDDEPLVRLKSKMKPKRKTSA
RSSKDQGPISLQQELADLLDDGGKRRRRKAPDQRTTTESQESELQAVLER
KPKGCSRAQLAKSYEKAIASYMSASCDLCEFSAPYLSELKTHFLEVHQRE
YYIKCCGKVFTRASKLMDHIRKHINPKLFTCTICKKSLNSQDYLATHIET
VHNKVAQIGKVLKFPCPKCERTFSSERRMANHLAKHDTDQLEHTCEICCK
SFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFERHLLEHQGVVAP
AVECPICRVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKY
AHKLTTNLQCTFCEKTFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSN
MYVHIKQRHADEWLRAKMARSHNPQFKPADVASFLDH
BO14278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2889-PB | 581 | CG2889-PB | 1..581 | 1..581 | 3131 | 100 | Plus |
CG2889-PA | 581 | CG2889-PA | 1..581 | 1..581 | 3131 | 100 | Plus |
CG15073-PA | 580 | CG15073-PA | 1..527 | 1..571 | 631 | 28 | Plus |
grau-PA | 570 | CG33133-PA | 3..531 | 2..563 | 581 | 28.4 | Plus |
CG11695-PA | 544 | CG11695-PA | 1..498 | 1..560 | 577 | 29.5 | Plus |