Clone BO14278 Report

Search the DGRC for BO14278

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG2889-RA
Protein status:BO14278.pep: full length peptide match
Sequenced Size:1777

Clone Sequence Records

BO14278.3prime Sequence

809 bp (728 high quality bases) assembled on 2006-05-29

> BO14278.3prime
ATGGTCTAGAAAGCTTGCAACGTCGGCCGGTTTGAACTGCGGATTGTGCG
AGCGTGCCATCTTGGCGCGCAGCCACTCGTCCGCGTGACGCTGCTTAATG
TGGACATACATATTGGAGCGGGAACGGCACTCCTTGGGGCAATGCGGACA
GTTGTACAGCTGCAGGCCCGTGTGGATGGCCATGTGCTCGTCCAGGTTGC
GCTGCTGCTTGAAGGTTTTCTCGCAGAACGTGCACTGCAGATTGGTGGTC
AGCTTGTGGGCATATTTGACGTGACCGCGGAGCGCTGTGCGCGATGTGCA
GGTCTTGCCACAATGCGGACACACGGTGTCCGTGCTGTCGTGTGTGAAGC
GGTGCAGGCGCAAGCTGTGCTCGTTCTTCAGCCAAACACGGCAGATGGGG
CACTCCACAGCCGGGGCCACGACGCCCTGGTGCTCCAGCAAATGGCGCTC
GAAGGAGGGCTTGAACTTGAACTTCTTCCCGCAAATGTCGCAAACGTGAC
GATGCAGGTCTTCGTGGATGGATTGGATGTGCCTTCGCAGGCGGTGTACA
TTGGCAAAGCTTTTGCAGCAGATCTCGCAGGTGTGCTCCAGTTGATCGGT
GTCGTGCTTGGCCAGATGATTGGCCATACGGCGCTCGCTGCTGAAGGTGC
GTTCGCACTTGGGGCACGGGAACTTGAGCACCTTGCCGATTTGAGCCACC
TTGTTGTGCACCGTCTCGATATGAGTGGCCAAGTAATCCTGCGAGTTGAG
CGACTTCTTGCAAATGGTGCAGGTAAATAGCTTGGGGTTGATATGTTTGC
GGATGTGGT

BO14278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-PA 1746 CG2889-RA 953..1743 809..19 3930 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-RB 2098 CG2889-RB 1255..2045 809..19 3940 99.9 Minus
CG2889-RA 2173 CG2889-RA 1330..2120 809..19 3940 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10476606..10477148 561..19 2715 100 Minus
X 23542271 X 10476183..10476395 772..560 1050 99.5 Minus
X 23542271 X 10476089..10476125 809..773 185 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:30:29 has no hits.

BO14278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:10 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-PA 953..1746 15..809 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:08 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-PA 953..1746 15..809 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:22 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 1330..2127 12..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:00 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 1330..2127 12..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:00 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10476089..10476125 773..809 100 -> Minus
X 10476183..10476395 560..772 99 -> Minus
X 10476608..10477155 12..559 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:22 Download gff for BO14278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10370122..10370158 773..809 100 -> Minus
arm_X 10370216..10370428 560..772 99 -> Minus
arm_X 10370641..10371188 12..559 99   Minus

BO14278.5prime Sequence

875 bp (814 high quality bases) assembled on 2006-05-29

> BO14278.5prime
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCCA
AGAGCTACGAGAAGGCCATTGCTAGCTACATGAGTGCAAGCTGCGACCTG
TGCGAATTTAGTGCTCCCTACCTAT

BO14278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-PA 1746 CG2889-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-RB 2098 CG2889-RB 299..1161 13..875 4300 99.9 Plus
CG2889-RA 2173 CG2889-RA 374..1236 13..875 4300 99.9 Plus
CG12219-RA 2018 CG12219-RA 261..350 149..238 180 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10475200..10475622 138..560 2115 100 Plus
X 23542271 X 10475680..10475995 560..875 1580 100 Plus
X 23542271 X 10475014..10475140 13..139 620 99.2 Plus
Blast to na_te.dros performed on 2015-02-13 07:35:52 has no hits.

BO14278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:11 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:09 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:28 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 367..1236 4..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:37 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 367..1236 4..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:37 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10475007..10475140 4..139 96 -> Plus
X 10475202..10475622 140..560 100 -> Plus
X 10475681..10475995 561..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:28 Download gff for BO14278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10369714..10370028 561..875 100   Plus
arm_X 10369040..10369173 4..139 96 -> Plus
arm_X 10369235..10369655 140..560 100 -> Plus

BO14278.complete Sequence

1777 bp assembled on 2007-03-23

GenBank Submission: FJ638726

> BO14278.complete
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCCA
AGAGCTACGAGAAGGCCATTGCTAGCTACATGAGTGCAAGCTGCGACCTG
TGCGAATTTAGTGCTCCCTACCTATCCGAATTGAAGACCCACTTCCTGGA
GGTGCACCAGCGCGAGTACTACATCAAGTGCTGCGGCAAAGTCTTTACAC
GCGCTTCCAAGCTGATGGACCACATCCGCAAACATATCAACCCCAAGCTA
TTTACCTGCACCATTTGCAAGAAGTCGCTCAACTCGCAGGACTACTTGGC
CACTCATATCGAGACGGTGCACAACAAGGTGGCTCAAATCGGCAAGGTGC
TCAAGTTCCCGTGCCCCAAGTGCGAACGCACCTTCAGCAGCGAGCGCCGT
ATGGCCAATCATCTGGCCAAGCACGACACCGATCAACTGGAGCACACCTG
CGAGATCTGCTGCAAAAGCTTTGCCAATGTACACCGCCTGCGAAGGCACA
TCCAATCCATCCACGAAGACCTGCATCGTCACGTTTGCGACATTTGCGGG
AAGAAGTTCAAGTTCAAGCCCTCCTTCGAGCGCCATTTGCTGGAGCACCA
GGGCGTCGTGGCCCCGGCTGTGGAGTGCCCCATCTGCCGTGTTTGGCTGA
AGAACGAGCACAGCTTGCGCCTGCACCGCTTCACACACGACAGCACGGAC
ACCGTGTGTCCGCATTGTGGCAAGACCTGCACATCGCGCACAGCGCTCCG
CGGTCACGTCAAATATGCCCACAAGCTGACCACCAATCTGCAGTGCACGT
TCTGCGAGAAAACCTTCAAGCAGCAGCGCAACCTGGACGAGCACATGGCC
ATCCACACGGGCCTGCAGCTGTACAACTGTCCGCATTGCCCCAAGGAGTG
CCGTTCCCGCTCCAATATGTATGTCCACATTAAGCAGCGTCACGCGGACG
AGTGGCTGCGCGCCAAGATGGCACGCTCGCACAATCCGCAGTTCAAACCG
GCCGACGTTGCAAGCTTTCTAGACCAT

BO14278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-RB 1746 CG2889-PB 1..1743 17..1759 8715 100 Plus
CG2889-RA 1746 CG2889-PA 1..1743 17..1759 8715 100 Plus
CG12219-RA 1689 CG12219-PA 175..264 149..238 180 80 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-RB 2098 CG2889-RB 299..2045 13..1759 8720 99.9 Plus
CG2889-RA 2173 CG2889-RA 374..2120 13..1759 8720 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10476606..10477148 1217..1759 2715 100 Plus
X 23542271 X 10475680..10476125 560..1005 2230 100 Plus
X 23542271 X 10475200..10475622 138..560 2115 100 Plus
X 23542271 X 10476183..10476395 1006..1218 1065 100 Plus
X 23542271 X 10475014..10475140 13..139 620 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 07:57:21 has no hits.

BO14278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:23 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 1..1746 17..1763 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:35 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 367..2127 4..1766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:50 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 378..2120 17..1761 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:24 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 367..2127 4..1766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:02 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
CG2889-RA 378..2120 17..1761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:02 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
X 10475018..10475140 17..139 100 -> Plus
X 10475202..10475622 140..560 100 -> Plus
X 10475681..10476125 561..1005 100 -> Plus
X 10476183..10476395 1006..1218 100 -> Plus
X 10476608..10477148 1219..1761 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:50 Download gff for BO14278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10369235..10369655 140..560 100 -> Plus
arm_X 10369051..10369173 17..139 100 -> Plus
arm_X 10369714..10370158 561..1005 100 -> Plus
arm_X 10370216..10370428 1006..1218 100 -> Plus
arm_X 10370641..10371181 1219..1761 99   Plus

BO14278.pep Sequence

Translation from 16 to 1777

> BO14278.pep
MICRLCLRCLSPGSAVFLFETDDTLAETRLVKMIAKFLQLEILPDDGIST
SVCTECCEHLEDFNGFWQLVEQKQCSLKKEFLTVDVDCAAMKWTGGVDVD
VNIDELPLAAGDMDEKPLDLHNLSLLGSVLDVNVDSVEVREPIKEQLPCE
EEEDEKPCLQASDSEPEVTEGQPESESDSSDDEPLVRLKSKMKPKRKTSA
RSSKDQGPISLQQELADLLDDGGKRRRRKAPDQRTTTESQESELQAVLER
KPKGCSRAQLAKSYEKAIASYMSASCDLCEFSAPYLSELKTHFLEVHQRE
YYIKCCGKVFTRASKLMDHIRKHINPKLFTCTICKKSLNSQDYLATHIET
VHNKVAQIGKVLKFPCPKCERTFSSERRMANHLAKHDTDQLEHTCEICCK
SFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFERHLLEHQGVVAP
AVECPICRVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKY
AHKLTTNLQCTFCEKTFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSN
MYVHIKQRHADEWLRAKMARSHNPQFKPADVASFLDH

BO14278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2889-PB 581 CG2889-PB 1..581 1..581 3131 100 Plus
CG2889-PA 581 CG2889-PA 1..581 1..581 3131 100 Plus
CG15073-PA 580 CG15073-PA 1..527 1..571 631 28 Plus
grau-PA 570 CG33133-PA 3..531 2..563 581 28.4 Plus
CG11695-PA 544 CG11695-PA 1..498 1..560 577 29.5 Plus