Clone Sequence Records
BO14280.3prime Sequence
769 bp (701 high quality bases) assembled on 2006-05-29
> BO14280.3prime
ATGGTCTAGAAAGCTTGCGTTCATGACGCGATTCATTTGGTAACCATGTG
GATTAAATGAATGCATGCTAAAGTTGTTGGCTGGGTGCATTCTAAAGTTG
TTGGCCGGTTGCATCTTAAAGTTGTTGTCCAAATTGTTGTAGTTGTTGGT
CTGGAACAGTTGGTTTTTGTTCTGCACGTTCTTTTTGTCAGCAGTCGACA
CATGGACCGAAACTCCCTTGATTATGTGTTTCTCTCCGCACACGACGCGT
GGTACATACGGATCGAGAAAGGTTACAAAGCTAAAAGCCCTGAAGGGCTT
GGGAATGAACACGTCGATCACTTCGCCAAACTTTGAGAAGTACTCGCGCA
AGTCATCCGCCTCTATGTCCTCGGTGCAGCGGCCGACGAATACCTTGCCA
GGCTCCTGATTGCCCATGCCCCTCGAGGCGGGCACCTTAACCTCGCACCA
GCGACCATCAATTGAATGGCGCTTAGAGAGTACGTGCATCTGGACATCGT
AAGAGCCGAAGCGCACGAACCCGAAACCCTTGGAGTGGCCCGACCTGGTG
TCCTTCTTGATCTCAGCCTTCACCACATCGCCGTAGGTCTCGAAGTACTC
ACGCAAATCCTGCTCGGTGGTGTTATAGGACAAGCCGAGCACGATGAGAT
CAAAGCAGCGCAGATGGGCCTCAGTGCGCTTGGTTTTGGCAGTTGAGTTT
TCCAAGTTATCTTCGCTCTGGCGCTTGTTCTTCTTGGGAAAGACGCAAAA
GTAATGGTACTCGCCCCAG
BO14280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-PA | 957 | CG7804-RA | 204..954 | 769..19 | 3755 | 100 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 204..342 | 769..631 | 345 | 89.9 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 204..342 | 769..631 | 345 | 89.9 | Minus |
| CG10327-PA | 999 | TBPH-RA | 204..342 | 769..631 | 345 | 89.9 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 204..342 | 769..631 | 345 | 89.9 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 410..487 | 563..486 | 265 | 93.5 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 410..487 | 563..486 | 265 | 93.5 | Minus |
| CG10327-PA | 999 | TBPH-RA | 410..487 | 563..486 | 265 | 93.5 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 410..487 | 563..486 | 265 | 93.5 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 517..608 | 456..365 | 235 | 90.2 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 517..608 | 456..365 | 235 | 90.2 | Minus |
| CG10327-PA | 999 | TBPH-RA | 517..608 | 456..365 | 235 | 90.2 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 517..608 | 456..365 | 235 | 90.2 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 367..395 | 606..578 | 145 | 100 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 661..704 | 312..269 | 145 | 93.1 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 731..784 | 242..189 | 145 | 90.7 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 367..395 | 606..578 | 145 | 100 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 661..704 | 312..269 | 145 | 93.1 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 731..784 | 242..189 | 145 | 90.7 | Minus |
| CG10327-PA | 999 | TBPH-RA | 367..395 | 606..578 | 145 | 100 | Minus |
| CG10327-PA | 999 | TBPH-RA | 661..704 | 312..269 | 145 | 93.1 | Minus |
| CG10327-PA | 999 | TBPH-RA | 731..784 | 242..189 | 145 | 90.7 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 367..395 | 606..578 | 145 | 100 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 661..704 | 312..269 | 145 | 93.1 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 731..784 | 242..189 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 1782 | CG7804-RB | 604..1354 | 769..19 | 3755 | 100 | Minus |
| CG7804-RA | 1722 | CG7804-RA | 544..1294 | 769..19 | 3755 | 100 | Minus |
| TBPH-RF | 1930 | CG10327-RF | 322..955 | 769..136 | 1730 | 85 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472625..15473375 | 19..769 | 3755 | 100 | Plus |
| 2R | 25286936 | 2R | 23860835..23861143 | 423..731 | 900 | 86.1 | Plus |
| 2R | 25286936 | 2R | 23860570..23860776 | 215..421 | 510 | 83.1 | Plus |
| 2R | 25286936 | 2R | 23860436..23860513 | 136..213 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:15:25 has no hits.
BO14280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:14 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-PA | 204..957 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:14 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-PA | 204..957 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:45 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 544..1294 | 19..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:35 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 544..1294 | 19..769 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:35 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15472625..15473375 | 19..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:45 Download gff for
BO14280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15465725..15466475 | 19..769 | 100 | | Plus |
BO14280.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-05-29
> BO14280.5prime
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAATCAGGAGCCTGGCAAGGTATT
CGTCGGCCGCTGCACCGAGGACATAGAGGCGGATGACTTGCGCGAGTACT
TCTCAAAGTTTGGCGAAGTGATCGACGTGTTCATTCCCAAGCCCTTCAGG
GCTTTTAGCTTTGTAACCTTTCTCGATCCGTATGTACCACGCGTCGTGTG
CGGAG
BO14280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-PA | 957 | CG7804-RA | 1..739 | 17..755 | 3695 | 100 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG10327-PA | 999 | TBPH-RA | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG10327-PA | 999 | TBPH-RA | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG10327-PA | 999 | TBPH-RA | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG10327-PA | 999 | TBPH-RA | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG10327-PA | 999 | TBPH-RA | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 367..395 | 383..411 | 145 | 100 | Plus |
| CG10327-PB | 1596 | TBPH-RB | 661..704 | 677..720 | 145 | 93.1 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 367..395 | 383..411 | 145 | 100 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 661..704 | 677..720 | 145 | 93.1 | Plus |
| CG10327-PA | 999 | TBPH-RA | 367..395 | 383..411 | 145 | 100 | Plus |
| CG10327-PA | 999 | TBPH-RA | 661..704 | 677..720 | 145 | 93.1 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 367..395 | 383..411 | 145 | 100 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 661..704 | 677..720 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 1782 | CG7804-RB | 401..1139 | 17..755 | 3695 | 100 | Plus |
| CG7804-RA | 1722 | CG7804-RA | 341..1079 | 17..755 | 3695 | 100 | Plus |
| TBPH-RF | 1930 | CG10327-RF | 119..831 | 17..729 | 2170 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472840..15473578 | 755..17 | 3695 | 100 | Minus |
| 2R | 25286936 | 2R | 23860835..23861143 | 566..258 | 900 | 86.1 | Minus |
| 2R | 25286936 | 2R | 23861207..23861446 | 256..17 | 810 | 89.2 | Minus |
| 2R | 25286936 | 2R | 23860615..23860776 | 729..568 | 480 | 86.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:25:38 has no hits.
BO14280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:15 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-PA | 1..739 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:15 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-PA | 1..739 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:58 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1079 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:42 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1079 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:42 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15472840..15473578 | 17..755 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:58 Download gff for
BO14280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15465940..15466678 | 17..755 | 100 | | Minus |
BO14280.complete Sequence
988 bp assembled on 2006-10-11
GenBank Submission: FJ633072
> BO14280.complete
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAATCAGGAGCCTGGCAAGGTATT
CGTCGGCCGCTGCACCGAGGACATAGAGGCGGATGACTTGCGCGAGTACT
TCTCAAAGTTTGGCGAAGTGATCGACGTGTTCATTCCCAAGCCCTTCAGG
GCTTTTAGCTTTGTAACCTTTCTCGATCCGTATGTACCACGCGTCGTGTG
CGGAGAGAAACACATAATCAAGGGAGTTTCGGTCCATGTGTCGACTGCTG
ACAAAAAGAACGTGCAGAACAAAAACCAACTGTTCCAGACCAACAACTAC
AACAATTTGGACAACAACTTTAAGATGCAACCGGCCAACAACTTTAGAAT
GCACCCAGCCAACAACTTTAGCATGCATTCATTTAATCCACATGGTTACC
AAATGAATCGCGTCATGAACGCAAGCTTTCTAGACCAT
BO14280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 957 | CG7804-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
| CG7804-RA | 957 | CG7804-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
| TBPH-RF | 1596 | CG10327-PF | 1..837 | 17..853 | 2385 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 1782 | CG7804-RB | 401..1354 | 17..970 | 4770 | 100 | Plus |
| CG7804-RA | 1722 | CG7804-RA | 341..1294 | 17..970 | 4770 | 100 | Plus |
| TBPH-RF | 1930 | CG10327-RF | 119..955 | 17..853 | 2385 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472625..15473578 | 970..17 | 4770 | 100 | Minus |
| 2R | 25286936 | 2R | 23860835..23861143 | 566..258 | 900 | 86.1 | Minus |
| 2R | 25286936 | 2R | 23861207..23861446 | 256..17 | 810 | 89.2 | Minus |
| 2R | 25286936 | 2R | 23860570..23860776 | 774..568 | 510 | 83.1 | Minus |
| 2R | 25286936 | 2R | 23860436..23860513 | 853..776 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:44:08 has no hits.
BO14280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:10 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 1..957 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:47 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:38 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:11 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:20 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:20 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15472623..15473578 | 17..972 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:38 Download gff for
BO14280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15465723..15466678 | 17..972 | 99 | | Minus |
BO14280.pep Sequence
Translation from 16 to 988
> BO14280.pep
MVFVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAV
RGVRSNEGRLYSPSEETGWGEYHYFCVFPKKNKRQSEDNLENSTAKTKRT
EAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGF
GFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCT
EDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHI
IKGVSVHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPANNFRMHPANN
FSMHSFNPHGYQMNRVMNASFLDH
BO14280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-PB | 318 | CG7804-PB | 1..318 | 1..318 | 1702 | 100 | Plus |
| CG7804-PA | 318 | CG7804-PA | 1..318 | 1..318 | 1702 | 100 | Plus |
| TBPH-PA | 332 | CG10327-PA | 1..297 | 1..314 | 1186 | 72.9 | Plus |
| TBPH-PF | 531 | CG10327-PF | 1..297 | 1..314 | 1186 | 72.9 | Plus |
| TBPH-PE | 531 | CG10327-PE | 1..297 | 1..314 | 1186 | 72.9 | Plus |
