Clone Sequence Records
BO14287.complete Sequence
1864 bp assembled on 2008-09-03
GenBank Submission: KX799789
> BO14287.complete
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGGG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAATTTGCCTGGATGTGGGC
ACAAATAACAAATCGCTACACGAGGATCCCCTGTACATCGGTCTAAGGGA
TGAGCGTTTAAAGGGCGATGAGTACGTGTGCTTTGTGGATGAGTTCATGG
AGGCAGTCGTATCCACCTTTGGAGATCAAACGCTCATCCACTTCGAGGAC
TTTGCGACACCCAATGCTTTTATGTTTCTGAATAGGTATCAGCATTGCTA
CTGCCATTTCAATGACGACATTCAGGGCACTGCCGCTGTTGGTTTGGGTG
GATTGCTTGGCATCCAGAGGATCACCAAGAAGCCGCTGGAGGAGCATGTC
ATTGTCTTCGCCGGAGCGGGAAGCGCTGCCATGGGCATCGCCTATTTGCT
TAAAATGGAGCTGATGTCCAGGGGTCTCTCCGAGGCTGATGCTGCCAAAA
ATATATATTTTTACGATCAAGACGGTGTCTTGACCACAGCAAGGAAGAGC
ATACCGGATATTCTATGCGTTTTCGCCAAGAACATGAAGGAAACTAAGTC
CCTGGAGACGTTGGTCGAACAAGTGAAGCCCTCAATTATTATGGGTGCCA
CCTCGGCACCAGGACTTTTCACTGAGAAAATAATACGCACAATGGCGGCG
AGTCACGAGCGTCCTGGCATTTTTGCCTTCTCCAATCCCACCATCAAATC
TGAGTGCACTGCCGAACAGGCGTACAAATTCTCAGATGGAAAGGCTATAT
ATTCGGCAGGATCTCCTTTTCCGCCCGTGGAGTTCAATGGCAAAAGGCTA
ACTCCTGGTCAAGCTAACAACTGTTTTGCTTTTCCCGCTTTGGTTTTGGC
CACCATGACTGTTTTGGCCACTCGAATGCCAGACGAGATATTCCTTTTGG
CCGCCCACGAGCTCGCTGAATTTCCAACCAATGAGGAGATGCAAAGCGGA
CGTATCTATCCTCTGGTGAAGCAGGCCAATGAAGTGGCCTACAAAATAGG
CGTGAAAGTGGCCAAGTATCTGATAGAAAACGGTTATGCTAAGCGCAATT
TAGAACCGGAAGATGTTGAGGAGTATATCGAAAAGAATAGCTATAAACTG
ACCTATGGAAGCTCGCTGGCTGAGACTTGGGCGTATCCAAAAATGAAACC
GCATCCAAGTACAGCCGGCCATGAAAATAAACATCAAAAGAAAAAGGCAA
GCTTTCTAGACCAT
BO14287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-RD | 1833 | CG7964-PD | 1..1830 | 17..1846 | 9060 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-RD | 4198 | CG7964-RD | 210..2039 | 17..1846 | 9060 | 99.7 | Plus |
| Menl-2-RE | 4198 | CG7969-RE | 210..2039 | 17..1846 | 9060 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16417764..16418966 | 1388..186 | 5940 | 99.6 | Minus |
| 2R | 25286936 | 2R | 16417408..16417704 | 1684..1388 | 1470 | 99.7 | Minus |
| 2R | 25286936 | 2R | 16419018..16419189 | 188..17 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 16417187..16417351 | 1846..1682 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:00 has no hits.
BO14287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:03 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RA | 205..2049 | 12..1856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:50 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RC | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:30 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RA | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:01 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RE | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:01 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16419019..16419189 | 17..187 | 100 | | Minus |
| 2R | 16417193..16417350 | 1683..1840 | 100 | <- | Minus |
| 2R | 16417410..16417704 | 1388..1682 | 99 | <- | Minus |
| 2R | 16417765..16418964 | 188..1387 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:50 Download gff for
BO14287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12306524..12306694 | 17..187 | 100 | | Minus |
| arm_2R | 12304698..12304855 | 1683..1840 | 100 | <- | Minus |
| arm_2R | 12304915..12305209 | 1388..1682 | 99 | <- | Minus |
| arm_2R | 12305270..12306469 | 188..1387 | 99 | <- | Minus |
BO14287.3prime Sequence
813 bp (784 high quality bases) assembled on 2006-05-29
> BO14287.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTTTTGATGTTTATTTTCATGGCCGG
CTGTACTTGGATGCGGTTTCATTTTTGGATACGCCCAAGTCTCAGCCAGC
GAGCTTCCATAGGTCAGTTTATAGCTATTCTTTTCGATATACTCCTCAAC
ATCTTCCGGTTCTAAATTGCGCTTAGCATAACCGTTTTCTATCAGATACT
TGGCCACTTTCACGCCTATTTTGTAGGCCACTTCATTGGCCTGCTTCACC
AGAGGATAGATACGTCCGCTTTGCATCTCCTCATTGGTTGGAAATTCAGC
GAGCTCGTGGGCGGCCAAAAGGAATATCTCGTCTGGCATTCGAGTGGCCA
AAACAGTCATGGTGGCCAAAACCAAAGCGGGAAAAGCAAAACAGTTGTTA
GCTTGACCAGGAGTTAGCCTTTTGCCATTGAACTCCACGGGCGGAAAAGG
AGATCCTGCCGAATATATAGCCTTTCCATCTGAGAATTTGTACGCCTGTT
CGGCAGTGCACTCAGATTTGATGGTGGGATTGGAGAAGGCAAAAATGCCA
GGACGCTCGTGACTCGCCGCCATTGTGCGTATTATTTTCTCAGTGAAAAG
TCCTGGTGCCGAGGTGGCACCCATAATAATTGAGGGCTTCACTTGTTCGA
CCAACGTCTCCAGGGACTTAGTTTCCTTCATGTTCTTGGCGAAAACGCAT
AGAATATCCGGTATGCTCTTCCTTGCTGTGGTCAAGACACCGTCTTGATC
GTAAAAATATATATTTTTGGCAGCATCAGCCTCGGAGAGACCCCTGGACA
TCAGCTCCATTTT
BO14287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7964-PA | 1833 | Menl-1-RA | 1036..1830 | 813..19 | 3850 | 99.3 | Minus |
| CG7964-PC | 1833 | Menl-1-RC | 1036..1830 | 813..19 | 3850 | 99.3 | Minus |
| CG7964-PB | 1746 | Menl-1-RB | 1036..1668 | 813..181 | 3040 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-RD | 4198 | CG7964-RD | 1245..2039 | 813..19 | 3900 | 99.4 | Minus |
| Menl-2-RE | 4198 | CG7969-RE | 1245..2039 | 813..19 | 3900 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16417764..16418100 | 477..813 | 1625 | 98.8 | Plus |
| 2R | 25286936 | 2R | 16417408..16417704 | 181..477 | 1470 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16417187..16417351 | 19..183 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:45:47 has no hits.
BO14287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:22 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7964-PA | 1036..1833 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:27 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7964-PC | 1036..1833 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:54:51 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RC | 1245..2048 | 10..813 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:24 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RE | 1245..2049 | 9..813 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:24 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16417177..16417350 | 9..182 | 97 | <- | Plus |
| 2R | 16417410..16417704 | 183..477 | 99 | <- | Plus |
| 2R | 16417765..16418100 | 478..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:54:51 Download gff for
BO14287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12304682..12304855 | 9..182 | 97 | <- | Plus |
| arm_2R | 12304915..12305209 | 183..477 | 99 | <- | Plus |
| arm_2R | 12305270..12305605 | 478..813 | 98 | | Plus |
BO14287.5prime Sequence
861 bp (808 high quality bases) assembled on 2006-05-29
> BO14287.5prime
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGGG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAATTTGCCTGGATGTGGGC
ACAAATAACAAATCGCTACACGAGGATCCCCTGTACATCGGTCTAAGGGA
TGAGCGTTTAAAGGGCGATGAGTACGTGTGCTTTGTGGATGAGTTCATGG
AGGCAGTCGTATCCACCTTTGGAGATCAAACGCTCATCCACTTCGAGGAC
TTTGCGACACC
BO14287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7964-PA | 1833 | Menl-1-RA | 1..845 | 17..861 | 4200 | 99.8 | Plus |
| CG7964-PB | 1746 | Menl-1-RB | 1..845 | 17..861 | 4200 | 99.8 | Plus |
| CG7964-PC | 1833 | Menl-1-RC | 1..845 | 17..861 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-RD | 4198 | CG7964-RD | 210..1054 | 17..861 | 4210 | 99.9 | Plus |
| Menl-2-RE | 4198 | CG7969-RE | 210..1054 | 17..861 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16418291..16418966 | 861..186 | 3365 | 99.9 | Minus |
| 2R | 25286936 | 2R | 16419018..16419189 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:06:42 has no hits.
BO14287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:23 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7964-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:28 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7964-PC | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:39 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-1-RC | 205..1054 | 12..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:58 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Menl-2-RE | 205..1054 | 12..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:58 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16418291..16418964 | 188..861 | 99 | <- | Minus |
| 2R | 16419019..16419194 | 12..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:39 Download gff for
BO14287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12305796..12306469 | 188..861 | 99 | <- | Minus |
| arm_2R | 12306524..12306699 | 12..187 | 98 | | Minus |
BO14287.pep Sequence
Translation from 16 to 1864
> BO14287.pep
MSFFRLLNFGITRGSSISKTHQSNCECSPNLIKIRPSSSHDTIRVPIEVV
FSDKCNKALAFTLEERQRLCIHGLMPACVRTYDEQMLAIESNFHSFESNV
GRYRYLRALRQGYERLYFQFVSKNVHAVLPIIYTPTVGLACTVYGMLYRG
MTGIHITKHDRGHMKQILSNWPMRRSVKAICVTDGQRILGLGDLGANGMG
IAVGKMELYTALAGIPPSMLLPICLDVGTNNKSLHEDPLYIGLRDERLKG
DEYVCFVDEFMEAVVSTFGDQTLIHFEDFATPNAFMFLNRYQHCYCHFND
DIQGTAAVGLGGLLGIQRITKKPLEEHVIVFAGAGSAAMGIAYLLKMELM
SRGLSEADAAKNIYFYDQDGVLTTARKSIPDILCVFAKNMKETKSLETLV
EQVKPSIIMGATSAPGLFTEKIIRTMAASHERPGIFAFSNPTIKSECTAE
QAYKFSDGKAIYSAGSPFPPVEFNGKRLTPGQANNCFAFPALVLATMTVL
ATRMPDEIFLLAAHELAEFPTNEEMQSGRIYPLVKQANEVAYKIGVKVAK
YLIENGYAKRNLEPEDVEEYIEKNSYKLTYGSSLAETWAYPKMKPHPSTA
GHENKHQKKKASFLDH
BO14287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Menl-1-PD | 610 | CG7964-PD | 1..610 | 1..610 | 3191 | 100 | Plus |
| Menl-2-PE | 600 | CG7969-PE | 41..588 | 49..597 | 1473 | 49 | Plus |
| Menl-2-PA | 600 | CG7969-PA | 41..588 | 49..597 | 1473 | 49 | Plus |
| Menl-2-PD | 558 | CG7969-PD | 9..546 | 59..597 | 1451 | 49 | Plus |
| Men-b-PA | 617 | CG5889-PA | 54..601 | 47..593 | 1344 | 47.9 | Plus |
