Clone BO14291 Report

Search the DGRC for BO14291

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG5623-RA
Protein status:BO14291.pep: validated full length
Sequenced Size:871

Clone Sequence Records

BO14291.3prime Sequence

779 bp (767 high quality bases) assembled on 2006-05-29

> BO14291.3prime
ATGGTCTAGAAAGCTTGCACTCTGCAAATGATCCTCACAGCAGGCCGTAT
GGGTGGCATAGCAACGGCACTGGCCAGTGGGACAGCAGCACTGCCTCAGA
ATGGAGGTGCTGTAGGGGAACACGATGATCTTCCACTGCTGGTCAAGTTC
CAGGGTCTCGTAGTGATAACCTCGCTTGTAGACCACCATGGGCGTGTGGT
CCAAGTAGTGGGGCATAATCTCCATCAGGCAGGCATCCATGCAGTTCACA
AAGAACTGCACACAATTGATGAGCTTGGCCAAGATGTAGACACCTGTGAT
GGTCTCATCGAAGAAGTAGACCGCATCGAATTTGGGCGTCTCCTTGCCAA
AGATCAGCGCCACCTCCCGCATGCTACTGAAGGTATGCAGGGTGGTACAT
CCCGAGGGTCCGCTGGGAAAGAACAAGTGGGTGACGCCTCCCGTCACCAA
GATGGGACTGGCGCAGGCCGGAGCATCGGCCACATCGGCCAGAATATATT
TCACTGGTCGCAACCCATACTTTAGCTCATTAACGGCTCTTATGAAATTC
GGATGATTGGCCACATGTGGCTTTAGCTGCCTGAACCGACTCCTCACCCT
CTCGATGAACTCGTCCCGGATCGAATGATGCACTGCCACGGTGGCCATGG
GAAATGGCTGGAACGGCTCGTGCATCAACTCGGCCAAACAATATGCAGCC
GTATTCAAGTCTCCCTCCTTACAAACGCACATAAATCGCGCTCCGGGCCA
GGCTCTTGTCTTTTTCATGAGGTGCCGAA

BO14291.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 840 CG5623-RA 77..837 779..19 3655 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 132..892 779..19 3715 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766481..15767239 19..777 3705 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 16:37:25 has no hits.

BO14291.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:31 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 79..840 18..777 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:38 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 79..840 18..777 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:43:31 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 132..892 19..779 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:52 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 132..892 19..779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:52 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15766481..15767239 19..779 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:43:31 Download gff for BO14291.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592203..11592961 19..779 98   Plus

BO14291.5prime Sequence

858 bp (736 high quality bases) assembled on 2006-05-29

> BO14291.5prime
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTGCAAG

BO14291.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 840 CG5623-RA 1..837 17..853 4035 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 56..892 17..853 4095 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766481..15767239 853..95 3705 99.2 Minus
3R 32079331 3R 15767306..15767383 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:34:30 has no hits.

BO14291.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:32 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 1..840 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:39 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 1..840 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:16 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..858 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:33 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..858 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:33 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15766477..15767239 95..858 98 <- Minus
3R 15767306..15767383 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:16 Download gff for BO14291.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592199..11592961 95..858 98 <- Minus
arm_3R 11593028..11593105 17..94 100   Minus

BO14291.complete Sequence

871 bp assembled on 2006-10-11

GenBank Submission: FJ633076

> BO14291.complete
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTGCAAGCTTTCTAGACCAT

BO14291.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 840 CG5623-PA 1..837 17..853 4095 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 56..892 17..853 4095 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766481..15767239 853..95 3705 99.2 Minus
3R 32079331 3R 15767306..15767383 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:51 has no hits.

BO14291.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:20 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 1..840 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:30 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..892 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:07 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..892 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:21 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..892 17..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:23 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..892 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:23 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15766479..15767239 95..855 98 <- Minus
3R 15767306..15767383 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:07 Download gff for BO14291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592201..11592961 95..855 98 <- Minus
arm_3R 11593028..11593105 17..94 100   Minus

BO14291.pep Sequence

Translation from 16 to 871

> BO14291.pep
MCEIKQNFVTHDLVHNLRCNKRSPKVRHLMKKTRAWPGARFMCVCKEGDL
NTAAYCLAELMHEPFQPFPMATVAVHHSIRDEFIERVRSRFRQLKPHVAN
HPNFIRAVNELKYGLRPVKYILADVADAPACASPILVTGGVTHLFFPSGP
SGCTTLHTFSSMREVALIFGKETPKFDAVYFFDETITGVYILAKLINCVQ
FFVNCMDACLMEIMPHYLDHTPMVVYKRGYHYETLELDQQWKIIVFPYST
SILRQCCCPTGQCRCYATHTACCEDHLQSASFLDH

BO14291.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 279 CG5623-PA 1..279 1..279 1536 100 Plus
CG11634-PB 298 CG11634-PB 32..280 9..253 319 32.7 Plus
CG11634-PA 298 CG11634-PA 32..280 9..253 319 32.7 Plus
CG2336-PA 322 CG2336-PA 98..309 36..250 313 32.1 Plus
CG12516-PB 300 CG12516-PB 82..296 35..250 254 30.7 Plus