Clone Sequence Records
BO14291.3prime Sequence
779 bp (767 high quality bases) assembled on 2006-05-29
> BO14291.3prime
ATGGTCTAGAAAGCTTGCACTCTGCAAATGATCCTCACAGCAGGCCGTAT
GGGTGGCATAGCAACGGCACTGGCCAGTGGGACAGCAGCACTGCCTCAGA
ATGGAGGTGCTGTAGGGGAACACGATGATCTTCCACTGCTGGTCAAGTTC
CAGGGTCTCGTAGTGATAACCTCGCTTGTAGACCACCATGGGCGTGTGGT
CCAAGTAGTGGGGCATAATCTCCATCAGGCAGGCATCCATGCAGTTCACA
AAGAACTGCACACAATTGATGAGCTTGGCCAAGATGTAGACACCTGTGAT
GGTCTCATCGAAGAAGTAGACCGCATCGAATTTGGGCGTCTCCTTGCCAA
AGATCAGCGCCACCTCCCGCATGCTACTGAAGGTATGCAGGGTGGTACAT
CCCGAGGGTCCGCTGGGAAAGAACAAGTGGGTGACGCCTCCCGTCACCAA
GATGGGACTGGCGCAGGCCGGAGCATCGGCCACATCGGCCAGAATATATT
TCACTGGTCGCAACCCATACTTTAGCTCATTAACGGCTCTTATGAAATTC
GGATGATTGGCCACATGTGGCTTTAGCTGCCTGAACCGACTCCTCACCCT
CTCGATGAACTCGTCCCGGATCGAATGATGCACTGCCACGGTGGCCATGG
GAAATGGCTGGAACGGCTCGTGCATCAACTCGGCCAAACAATATGCAGCC
GTATTCAAGTCTCCCTCCTTACAAACGCACATAAATCGCGCTCCGGGCCA
GGCTCTTGTCTTTTTCATGAGGTGCCGAA
BO14291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 840 | CG5623-RA | 77..837 | 779..19 | 3655 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 132..892 | 779..19 | 3715 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766481..15767239 | 19..777 | 3705 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:37:25 has no hits.
BO14291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:31 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 79..840 | 18..777 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:38 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 79..840 | 18..777 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:43:31 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 132..892 | 19..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:52 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 132..892 | 19..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:52 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15766481..15767239 | 19..779 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:43:31 Download gff for
BO14291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592203..11592961 | 19..779 | 98 | | Plus |
BO14291.5prime Sequence
858 bp (736 high quality bases) assembled on 2006-05-29
> BO14291.5prime
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTGCAAG
BO14291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 840 | CG5623-RA | 1..837 | 17..853 | 4035 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 56..892 | 17..853 | 4095 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766481..15767239 | 853..95 | 3705 | 99.2 | Minus |
3R | 32079331 | 3R | 15767306..15767383 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:34:30 has no hits.
BO14291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:32 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:39 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:16 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:33 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:33 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15766477..15767239 | 95..858 | 98 | <- | Minus |
3R | 15767306..15767383 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:16 Download gff for
BO14291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592199..11592961 | 95..858 | 98 | <- | Minus |
arm_3R | 11593028..11593105 | 17..94 | 100 | | Minus |
BO14291.complete Sequence
871 bp assembled on 2006-10-11
GenBank Submission: FJ633076
> BO14291.complete
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTGCAAGCTTTCTAGACCAT
BO14291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 840 | CG5623-PA | 1..837 | 17..853 | 4095 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 56..892 | 17..853 | 4095 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766481..15767239 | 853..95 | 3705 | 99.2 | Minus |
3R | 32079331 | 3R | 15767306..15767383 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:54:51 has no hits.
BO14291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:20 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:30 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..892 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:07 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..892 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:21 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..892 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:23 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..892 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:23 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15766479..15767239 | 95..855 | 98 | <- | Minus |
3R | 15767306..15767383 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:07 Download gff for
BO14291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592201..11592961 | 95..855 | 98 | <- | Minus |
arm_3R | 11593028..11593105 | 17..94 | 100 | | Minus |
BO14291.pep Sequence
Translation from 16 to 871
> BO14291.pep
MCEIKQNFVTHDLVHNLRCNKRSPKVRHLMKKTRAWPGARFMCVCKEGDL
NTAAYCLAELMHEPFQPFPMATVAVHHSIRDEFIERVRSRFRQLKPHVAN
HPNFIRAVNELKYGLRPVKYILADVADAPACASPILVTGGVTHLFFPSGP
SGCTTLHTFSSMREVALIFGKETPKFDAVYFFDETITGVYILAKLINCVQ
FFVNCMDACLMEIMPHYLDHTPMVVYKRGYHYETLELDQQWKIIVFPYST
SILRQCCCPTGQCRCYATHTACCEDHLQSASFLDH
BO14291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 279 | CG5623-PA | 1..279 | 1..279 | 1536 | 100 | Plus |
CG11634-PB | 298 | CG11634-PB | 32..280 | 9..253 | 319 | 32.7 | Plus |
CG11634-PA | 298 | CG11634-PA | 32..280 | 9..253 | 319 | 32.7 | Plus |
CG2336-PA | 322 | CG2336-PA | 98..309 | 36..250 | 313 | 32.1 | Plus |
CG12516-PB | 300 | CG12516-PB | 82..296 | 35..250 | 254 | 30.7 | Plus |