Clone Sequence Records
BO14292.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-29
> BO14292.3prime
ATGGTCTAGAAAGCTTGCCAAACGAGTCTTGCCATAATAGGCGCCTGCGA
CAGCGGACAGTATAATGATTACTATGGCGGCCATGTAGAAGAAAGTGCGC
CCAATCGCCTGGTCACGCAAGCCGTCGATCTGGTCTGTGAGGGCCATATG
CTCGTCCTCCAGCATGCTGACTTGCTTGAGCAACTTGGCCATTGGCTCAC
TGACTTCCTGGGCATCAAAATGGACCTCTCCGTCCTTGTTGTCCGTGGAT
ATTACAGCTGAACCTCCCGCCTGACGGAAATCGTCCTCCTTCGAAGGGAC
TAGCTCACATTTGATCTTGGTTTCCCGAGTTTCATTCGGGTTCTGCATCT
TCCAAAACTCCTGCACATCGCTTATGTCACCAGTCACCTCGGCGGCCAGG
AGAAGGAACTTATGACGCTTCTTTATCTGCTCCTGCAGAATTGGCTGCAT
GAATATGTCAACGCTGACCTTCTGCTCGGGCCCCAAGACACCGATGTTGG
GGCGTACATAAAAAAGTTTTGGAGTGGTGGTCTTCATCTTGAAGGCCATT
CGCTGGGTCTTACTGGTGTTCTTGATGACTAGCTTCCTGCTCACCGAGCG
GTTGAATGGTCCCTCAAAGACGATCACATCGCACGGGTCTAGCGCAAGTT
TGCTCTCGGTATTGTCGGACATGTCGACTGATAACT
BO14292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7919-PA | 657 | fan-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 147..800 | 672..19 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109278..8109931 | 672..19 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:43:38 has no hits.
BO14292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:34 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:40 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7919-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:30 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..806 | 11..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:13 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..806 | 11..672 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:13 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109278..8109937 | 11..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:30 Download gff for
BO14292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102378..8103037 | 11..672 | 99 | | Minus |
BO14292.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-29
> BO14292.5prime
GAAGTTATCAGTCGACATGTCCGACAATACCGAGAGCAAACTTGCGCTAG
ACCCGTGCGATGTGATCGTCTTTGAGGGACCATTCAACCGCTCGGTGAGC
AGGAAGCTAGTCATCAAGAACACCAGTAAGACCCAGCGAATGGCCTTCAA
GATGAAGACCACCACTCCAAAACTTTTTTATGTACGCCCCAACATCGGTG
TCTTGGGGCCCGAGCAGAAGGTCAGCGTTGACATATTCATGCAGCCAATT
CTGCAGGAGCAGATAAAGAAGCGTCATAAGTTCCTTCTCCTGGCCGCCGA
GGTGACTGGTGACATAAGCGATGTGCAGGAGTTTTGGAAGATGCAGAACC
CGAATGAAACTCGGGAAACCAAGATCAAATGTGAGCTAGTCCCTTCGAAG
GAGGACGATTTCCGTCAGGCGGGAGGTTCAGCTGTAATATCCACGGACAA
CAAGGACGGAGAGGTCCATTTTGATGCCCAGGAAGTCAGTGAGCCAATGG
CCAAGTTGCTCAAGCAAGTCAGCATGCTGGAGGACGAGCATATGGCCCTC
ACAGACCAGATCGACGGCTTGCGTGACCAGGCGATTGGGCGCACTTTCTT
CTACATGGCCGCCATAGTAATCATTATACTGTCCGCTGTCGCAGGCGCCT
ATTATGGCAAGACTCGTTTGGCAAGCTTTCTAGACC
BO14292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7919-PA | 657 | fan-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 147..800 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109278..8109931 | 17..670 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:12:43 has no hits.
BO14292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:34 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:42 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7919-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:25 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..806 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:39 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..806 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:39 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109278..8109937 | 17..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:25 Download gff for
BO14292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102378..8103037 | 17..678 | 99 | | Plus |
BO14292.complete Sequence
688 bp assembled on 2006-10-11
GenBank Submission: FJ633077
> BO14292.complete
GAAGTTATCAGTCGACATGTCCGACAATACCGAGAGCAAACTTGCGCTAG
ACCCGTGCGATGTGATCGTCTTTGAGGGACCATTCAACCGCTCGGTGAGC
AGGAAGCTAGTCATCAAGAACACCAGTAAGACCCAGCGAATGGCCTTCAA
GATGAAGACCACCACTCCAAAACTTTTTTATGTACGCCCCAACATCGGTG
TCTTGGGGCCCGAGCAGAAGGTCAGCGTTGACATATTCATGCAGCCAATT
CTGCAGGAGCAGATAAAGAAGCGTCATAAGTTCCTTCTCCTGGCCGCCGA
GGTGACTGGTGACATAAGCGATGTGCAGGAGTTTTGGAAGATGCAGAACC
CGAATGAAACTCGGGAAACCAAGATCAAATGTGAGCTAGTCCCTTCGAAG
GAGGACGATTTCCGTCAGGCGGGAGGTTCAGCTGTAATATCCACGGACAA
CAAGGACGGAGAGGTCCATTTTGATGCCCAGGAAGTCAGTGAGCCAATGG
CCAAGTTGCTCAAGCAAGTCAGCATGCTGGAGGACGAGCATATGGCCCTC
ACAGACCAGATCGACGGCTTGCGTGACCAGGCGATTGGGCGCACTTTCTT
CTACATGGCCGCCATAGTAATCATTATACTGTCCGCTGTCGCAGGCGCCT
ATTATGGCAAGACTCGTTTGGCAAGCTTTCTAGACCAT
BO14292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 657 | CG7919-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 147..800 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109278..8109931 | 17..670 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:47:48 has no hits.
BO14292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:23 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:32 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 110..769 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:19 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..800 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:26 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 110..769 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:52 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..800 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:52 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109278..8109931 | 17..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:19 Download gff for
BO14292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102378..8103031 | 17..672 | 99 | | Plus |
BO14292.pep Sequence
Translation from 16 to 688
> BO14292.pep
MSDNTESKLALDPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTT
PKLFYVRPNIGVLGPEQKVSVDIFMQPILQEQIKKRHKFLLLAAEVTGDI
SDVQEFWKMQNPNETRETKIKCELVPSKEDDFRQAGGSAVISTDNKDGEV
HFDAQEVSEPMAKLLKQVSMLEDEHMALTDQIDGLRDQAIGRTFFYMAAI
VIIILSAVAGAYYGKTRLASFLDH
BO14292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-PA | 218 | CG7919-PA | 1..218 | 1..218 | 1106 | 100 | Plus |
| Vap-33A-PE | 269 | CG5014-PE | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PC | 269 | CG5014-PC | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PB | 269 | CG5014-PB | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PA | 235 | CG5014-PA | 10..234 | 9..213 | 208 | 27.8 | Plus |
