Clone BO14296 Report

Search the DGRC for BO14296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:142
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptshd-RC
Protein status:BO14296.pep: validated not full length
Sequenced Size:1333

Clone Sequence Records

BO14296.3prime Sequence

833 bp (749 high quality bases) assembled on 2006-05-29

> BO14296.3prime
ATGGTCTAGAAAGCTTGCGAAAACCCGATCGCTGAGTCTTAGACTGAGTG
GAGTTTTGGGTGCCAGCAGGAACTCGAACTCCGTTTCCAGTGGCTTCACA
AAGCTCACATCAAAGGCTAGGACCATCTTAGCTAGCAGCAGCACCACCTC
CATTTCCACAAAACGCTTTCCTGGACACGATCTTCGACCCACTCCGAAGG
GCACCACAATACTGGCATTATCCACGTTCACCGTGAAATTCTCCGTGGCA
GGATCAATCCAACGCTCTGGGGTAAACTGCTTGGCCCCTTGGAAGTTGCT
GTCCTTGTGGCAGGCTATCATATTCTGACAGAGCACCACAGTCCCTGCAT
TAAGCGAGTAGCCCGAGAGCTCCATGTCCTCCTCCAGGATTCTGGCCAGG
CAAAAGGCTGTGGGCCTCAGTCTGTAGGACTCCTGTATACAGGCCTTTGT
GTATGTGGCATTCGTTAGTGCATCCTGCAGGATATTCGTGTCCCGATACT
CGCAGAATTCACTTAGGATTCGTGGCATAGCACCGGGATCTCCAGTAACA
GAACTCAGTACAAACAACAAAGTGTTGGCTAACGTTTCTATGCCAGCGGC
AATAAAGTCTATGATCGCTGACTTTTTGTCCCTGATATCCAGATCCTTGA
GCTCCAGAATATTCAGAAAGATACTTCGTAATCCAGCAGCCTCGTCATCC
TCGCAGGCAGCCGACTTTTTGAGTTCCTCCAGCTCATGATCGATGATCTC
GGAGATCACATCATAGATCAAGTCCTCGGCGCGGGCAAAGTCTCTGTACG
TTTTGGTGGGAAAGTATTTCCACAGACCCAGAC

BO14296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13478-PA 1302 shd-RA 490..1299 828..19 3950 99.5 Minus
CG13478-PB 1623 shd-RB 811..1620 828..19 3950 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
shd-RD 2985 CG13478-RD 1546..2360 833..19 4000 99.4 Minus
shd-RC 1633 CG13478-RC 554..1368 833..19 4000 99.4 Minus
shd-RB 2730 CG13478-RB 1291..2105 833..19 4000 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14620812..14621052 583..343 1205 100 Minus
3L 28110227 3L 14621180..14621396 343..127 1040 98.6 Minus
3L 28110227 3L 14620578..14620755 760..583 890 100 Minus
3L 28110227 3L 14621471..14621580 128..19 550 100 Minus
3L 28110227 3L 14620440..14620512 833..761 335 97.3 Minus
Blast to na_te.dros performed on 2015-02-11 09:54:37 has no hits.

BO14296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:41 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
shd-PA 485..1302 16..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:52 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13478-PB 806..1623 16..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:09 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
shd-RB 1291..2105 19..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:59 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
shd-RB 1291..2105 19..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:59 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14621473..14621580 19..126 100   Minus
3L 14620440..14620512 761..833 97 -> Minus
3L 14620578..14620755 583..760 100 -> Minus
3L 14620813..14621052 343..582 100 -> Minus
3L 14621181..14621396 127..342 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:09 Download gff for BO14296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14614573..14614680 19..126 100   Minus
arm_3L 14613540..14613612 761..833 97 -> Minus
arm_3L 14613678..14613855 583..760 100 -> Minus
arm_3L 14613913..14614152 343..582 100 -> Minus
arm_3L 14614281..14614496 127..342 98 -> Minus

BO14296.5prime Sequence

816 bp (787 high quality bases) assembled on 2006-05-29

> BO14296.5prime
GAAGTTATCAGTCGACATGCCCTCCAATGTGCCAATAGTGCACCTGTACA
ATCGCGATGATCTGGAGAAGGTGCTGAAGTACCCCAGCAAATACCCATTC
CGACCTCCCACTGAGATCATCGTGATGTACCGTCAATCCCGACCGGATCG
CTATGCAAGTGTTGGAATTGTGAACGAGCAAGGACCAATGTGGCAGCGCC
TACGATCTTCCCTGACCTCCAGCATTACTTCTCCCAGGGTCCTGCAGAAT
TTCCTGCCAGCCTTGAATGCGGTTTGTGATGATTTTATCGAACTACTGCG
AGCCAGGCGGGATCCGGATACACTGGTGGTTCCCAATTTCGAAGAGCTGG
CCAATCTGATGGGTCTGGAAGCTGTGTGCACTTTAATGTTGGGCAGAAGG
ATGGGTTTCCTGGCTATCGATACCAAGCAGCCGCAAAAGATCAGCCAACT
GGCAGCTGCTGTTAAACAGCTTTTCATATCCCAAAGGGACTCGTACTACG
GTCTGGGTCTGTGGAAATACTTTCCCACCAAAACGTACAGAGACTTTGCC
CGCGCCGAGGACTTGATCTATGATGTGATCTCCGAGATCATCGATCATGA
GCTGGAGGAACTCAAAAAGTCGGCTGCCTGCGAGGATGACGAGGCTGCTG
GATTACGAAGTATCTTTCTGAATATTCTGGAGCTCAAGGATCTGGATATC
AGGGACAAAAAGTCAGCGATCATAGACTTTATTGCCGCTGGCATAGAAAC
GTTAGCCAACACTTTGTTGTTTGTACTGAGTTCTGTTACTGAAGATCCCG
GTGCTATGCCACAAAT

BO14296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13478-PA 1302 shd-RA 1..796 17..812 3880 99.4 Plus
CG13478-PB 1623 shd-RB 322..1117 17..812 3880 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
shd-RD 2985 CG13478-RD 1062..1861 17..816 3925 99.4 Plus
shd-RC 1633 CG13478-RC 70..869 17..816 3925 99.4 Plus
shd-RB 2730 CG13478-RB 807..1606 17..816 3925 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14619956..14620512 17..573 2740 99.5 Plus
3L 28110227 3L 14620578..14620755 574..751 890 100 Plus
3L 28110227 3L 14620812..14620877 751..816 300 97 Plus
Blast to na_te.dros performed on 2015-02-12 13:02:19 has no hits.

BO14296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:42 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
shd-PA 1..800 17..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:54 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13478-PB 319..1121 11..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:47 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
shd-RB 804..1606 11..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:29:14 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
shd-RB 804..1606 11..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:29:14 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14619953..14620512 11..573 98 -> Plus
3L 14620578..14620755 574..751 100 -> Plus
3L 14620813..14620877 752..816 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:47 Download gff for BO14296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14613053..14613612 11..573 98 -> Plus
arm_3L 14613678..14613855 574..751 100 -> Plus
arm_3L 14613913..14613977 752..816 96   Plus

BO14296.complete Sequence

1333 bp assembled on 2006-10-11

GenBank Submission: FJ633079

> BO14296.complete
GAAGTTATCAGTCGACATGCCCTCCAATGTGCCAATAGTGCACCTGTACA
ATCGCGATGATCTGGAGAAGGTGCTGAAGTACCCCAGCAAATACCCATTC
CGACCTCCCACTGAGATCATCGTGATGTACCGTCAATCCCGACCGGATCG
CTATGCAAGTGTTGGAATTGTGAACGAGCAAGGACCAATGTGGCAGCGCC
TACGATCTTCCCTGACCTCCAGCATTACTTCTCCCAGGGTCCTGCAGAAT
TTCCTGCCAGCCTTGAATGCGGTTTGTGATGATTTTATCGAACTACTGCG
AGCCAGGCGGGATCCGGATACACTGGTGGTTCCCAATTTCGAAGAGCTGG
CCAATCTGATGGGTCTGGAAGCTGTGTGCACTTTAATGTTGGGCAGAAGG
ATGGGTTTCCTGGCTATCGATACCAAGCAGCCGCAAAAGATCAGCCAACT
GGCAGCTGCTGTTAAACAGCTTTTCATATCCCAAAGGGACTCGTACTACG
GTCTGGGTCTGTGGAAATACTTTCCCACCAAAACGTACAGAGACTTTGCC
CGCGCCGAGGACTTGATCTATGATGTGATCTCCGAGATCATCGATCATGA
GCTGGAGGAACTCAAAAAGTCGGCTGCCTGCGAGGATGACGAGGCTGCTG
GATTACGAAGTATCTTTCTGAATATTCTGGAGCTCAAGGATCTGGATATC
AGGGACAAAAAGTCAGCGATCATAGACTTTATTGCCGCTGGCATAGAAAC
GTTAGCCAACACTTTGTTGTTTGTACTGAGTTCTGTTACTGGAGATCCCG
GTGCTATGCCACGAATCCTAAGTGAATTCTGCGAGTATCGGGACACGAAT
ATCCTGCAGGATGCACTAACGAATGCCACATACACAAAGGCCTGTATACA
GGAGTCCTACAGACTGAGGCCCACAGCCTTTTGCCTGGCCAGAATCCTGG
AGGAGGACATGGAGCTCTCGGGCTACTCGCTTAATGCAGGGACTGTGGTG
CTCTGTCAGAATATGATAGCCTGCCACAAGGACAGCAACTTCCAAGGGGC
CAAGCAGTTTACCCCAGAGCGTTGGATTGATCCTGCCACGGAGAATTTCA
CGGTGAACGTGGATAATGCCAGTATTGTGGTGCCCTTCGGAGTGGGTCGA
AGATCGTGTCCAGGAAAGCGTTTTGTGGAAATGGAGGTGGTGCTGCTGCT
AGCTAAGATGGTCCTAGCCTTTGATGTGAGCTTTGTGAAGCCACTGGAAA
CGGAGTTCGAGTTCCTGCTGGCACCCAAAACTCCACTCAGTCTAAGACTC
AGCGATCGGGTTTTCGCAAGCTTTCTAGACCAT

BO14296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
shd-RD 1623 CG13478-PD 322..1620 17..1315 6405 99.5 Plus
shd-RC 1302 CG13478-PC 1..1299 17..1315 6405 99.5 Plus
shd-RB 1623 CG13478-PB 322..1620 17..1315 6405 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
shd-RD 2985 CG13478-RD 1062..2360 17..1315 6405 99.5 Plus
shd-RC 1633 CG13478-RC 70..1368 17..1315 6405 99.5 Plus
shd-RB 2730 CG13478-RB 807..2105 17..1315 6405 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14619956..14620512 17..573 2740 99.5 Plus
3L 28110227 3L 14620812..14621052 751..991 1205 100 Plus
3L 28110227 3L 14621180..14621396 991..1207 1040 98.6 Plus
3L 28110227 3L 14620578..14620755 574..751 890 100 Plus
3L 28110227 3L 14621471..14621580 1206..1315 550 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:12:51 has no hits.

BO14296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:31 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
shd-RB 319..1623 11..1318 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:33 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
shd-RB 319..1620 11..1315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:36 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
shd-RB 807..2105 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:31 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
shd-RB 319..1620 11..1315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:33 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
shd-RB 807..2105 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:33 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14620813..14621052 752..991 100 -> Plus
3L 14621181..14621396 992..1207 98 -> Plus
3L 14621473..14621580 1208..1317 98   Plus
3L 14619956..14620512 17..573 99 -> Plus
3L 14620578..14620755 574..751 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:36 Download gff for BO14296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14613056..14613612 17..573 99 -> Plus
arm_3L 14613678..14613855 574..751 100 -> Plus
arm_3L 14613913..14614152 752..991 100 -> Plus
arm_3L 14614281..14614496 992..1207 98 -> Plus
arm_3L 14614573..14614680 1208..1317 98   Plus

BO14296.pep Sequence

Translation from 16 to 1333

> BO14296.pep
MPSNVPIVHLYNRDDLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVG
IVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALNAVCDDFIELLRARRDP
DTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQPQKISQLAAAVK
QLFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELK
KSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTL
LFVLSSVTGDPGAMPRILSEFCEYRDTNILQDALTNATYTKACIQESYRL
RPTAFCLARILEEDMELSGYSLNAGTVVLCQNMIACHKDSNFQGAKQFTP
ERWIDPATENFTVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAKMVL
AFDVSFVKPLETEFEFLLAPKTPLSLRLSDRVFASFLDH

BO14296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
shd-PD 540 CG13478-PD 108..540 1..433 2219 100 Plus
shd-PC 433 CG13478-PC 1..433 1..433 2219 100 Plus
shd-PB 540 CG13478-PB 108..540 1..433 2219 100 Plus
Cyp12a5-PA 536 CG11821-PA 100..533 7..430 457 28.6 Plus
Cyp12a4-PA 536 CG6042-PA 97..533 4..430 452 29.1 Plus