Clone Sequence Records
BO14296.3prime Sequence
833 bp (749 high quality bases) assembled on 2006-05-29
> BO14296.3prime
ATGGTCTAGAAAGCTTGCGAAAACCCGATCGCTGAGTCTTAGACTGAGTG
GAGTTTTGGGTGCCAGCAGGAACTCGAACTCCGTTTCCAGTGGCTTCACA
AAGCTCACATCAAAGGCTAGGACCATCTTAGCTAGCAGCAGCACCACCTC
CATTTCCACAAAACGCTTTCCTGGACACGATCTTCGACCCACTCCGAAGG
GCACCACAATACTGGCATTATCCACGTTCACCGTGAAATTCTCCGTGGCA
GGATCAATCCAACGCTCTGGGGTAAACTGCTTGGCCCCTTGGAAGTTGCT
GTCCTTGTGGCAGGCTATCATATTCTGACAGAGCACCACAGTCCCTGCAT
TAAGCGAGTAGCCCGAGAGCTCCATGTCCTCCTCCAGGATTCTGGCCAGG
CAAAAGGCTGTGGGCCTCAGTCTGTAGGACTCCTGTATACAGGCCTTTGT
GTATGTGGCATTCGTTAGTGCATCCTGCAGGATATTCGTGTCCCGATACT
CGCAGAATTCACTTAGGATTCGTGGCATAGCACCGGGATCTCCAGTAACA
GAACTCAGTACAAACAACAAAGTGTTGGCTAACGTTTCTATGCCAGCGGC
AATAAAGTCTATGATCGCTGACTTTTTGTCCCTGATATCCAGATCCTTGA
GCTCCAGAATATTCAGAAAGATACTTCGTAATCCAGCAGCCTCGTCATCC
TCGCAGGCAGCCGACTTTTTGAGTTCCTCCAGCTCATGATCGATGATCTC
GGAGATCACATCATAGATCAAGTCCTCGGCGCGGGCAAAGTCTCTGTACG
TTTTGGTGGGAAAGTATTTCCACAGACCCAGAC
BO14296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13478-PA | 1302 | shd-RA | 490..1299 | 828..19 | 3950 | 99.5 | Minus |
CG13478-PB | 1623 | shd-RB | 811..1620 | 828..19 | 3950 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shd-RD | 2985 | CG13478-RD | 1546..2360 | 833..19 | 4000 | 99.4 | Minus |
shd-RC | 1633 | CG13478-RC | 554..1368 | 833..19 | 4000 | 99.4 | Minus |
shd-RB | 2730 | CG13478-RB | 1291..2105 | 833..19 | 4000 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14620812..14621052 | 583..343 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 14621180..14621396 | 343..127 | 1040 | 98.6 | Minus |
3L | 28110227 | 3L | 14620578..14620755 | 760..583 | 890 | 100 | Minus |
3L | 28110227 | 3L | 14621471..14621580 | 128..19 | 550 | 100 | Minus |
3L | 28110227 | 3L | 14620440..14620512 | 833..761 | 335 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:54:37 has no hits.
BO14296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:41 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-PA | 485..1302 | 16..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:52 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13478-PB | 806..1623 | 16..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:09 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 1291..2105 | 19..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:59 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 1291..2105 | 19..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:59 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14621473..14621580 | 19..126 | 100 | | Minus |
3L | 14620440..14620512 | 761..833 | 97 | -> | Minus |
3L | 14620578..14620755 | 583..760 | 100 | -> | Minus |
3L | 14620813..14621052 | 343..582 | 100 | -> | Minus |
3L | 14621181..14621396 | 127..342 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:09 Download gff for
BO14296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14614573..14614680 | 19..126 | 100 | | Minus |
arm_3L | 14613540..14613612 | 761..833 | 97 | -> | Minus |
arm_3L | 14613678..14613855 | 583..760 | 100 | -> | Minus |
arm_3L | 14613913..14614152 | 343..582 | 100 | -> | Minus |
arm_3L | 14614281..14614496 | 127..342 | 98 | -> | Minus |
BO14296.5prime Sequence
816 bp (787 high quality bases) assembled on 2006-05-29
> BO14296.5prime
GAAGTTATCAGTCGACATGCCCTCCAATGTGCCAATAGTGCACCTGTACA
ATCGCGATGATCTGGAGAAGGTGCTGAAGTACCCCAGCAAATACCCATTC
CGACCTCCCACTGAGATCATCGTGATGTACCGTCAATCCCGACCGGATCG
CTATGCAAGTGTTGGAATTGTGAACGAGCAAGGACCAATGTGGCAGCGCC
TACGATCTTCCCTGACCTCCAGCATTACTTCTCCCAGGGTCCTGCAGAAT
TTCCTGCCAGCCTTGAATGCGGTTTGTGATGATTTTATCGAACTACTGCG
AGCCAGGCGGGATCCGGATACACTGGTGGTTCCCAATTTCGAAGAGCTGG
CCAATCTGATGGGTCTGGAAGCTGTGTGCACTTTAATGTTGGGCAGAAGG
ATGGGTTTCCTGGCTATCGATACCAAGCAGCCGCAAAAGATCAGCCAACT
GGCAGCTGCTGTTAAACAGCTTTTCATATCCCAAAGGGACTCGTACTACG
GTCTGGGTCTGTGGAAATACTTTCCCACCAAAACGTACAGAGACTTTGCC
CGCGCCGAGGACTTGATCTATGATGTGATCTCCGAGATCATCGATCATGA
GCTGGAGGAACTCAAAAAGTCGGCTGCCTGCGAGGATGACGAGGCTGCTG
GATTACGAAGTATCTTTCTGAATATTCTGGAGCTCAAGGATCTGGATATC
AGGGACAAAAAGTCAGCGATCATAGACTTTATTGCCGCTGGCATAGAAAC
GTTAGCCAACACTTTGTTGTTTGTACTGAGTTCTGTTACTGAAGATCCCG
GTGCTATGCCACAAAT
BO14296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13478-PA | 1302 | shd-RA | 1..796 | 17..812 | 3880 | 99.4 | Plus |
CG13478-PB | 1623 | shd-RB | 322..1117 | 17..812 | 3880 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shd-RD | 2985 | CG13478-RD | 1062..1861 | 17..816 | 3925 | 99.4 | Plus |
shd-RC | 1633 | CG13478-RC | 70..869 | 17..816 | 3925 | 99.4 | Plus |
shd-RB | 2730 | CG13478-RB | 807..1606 | 17..816 | 3925 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14619956..14620512 | 17..573 | 2740 | 99.5 | Plus |
3L | 28110227 | 3L | 14620578..14620755 | 574..751 | 890 | 100 | Plus |
3L | 28110227 | 3L | 14620812..14620877 | 751..816 | 300 | 97 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:02:19 has no hits.
BO14296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:42 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-PA | 1..800 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:54 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13478-PB | 319..1121 | 11..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:13:47 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 804..1606 | 11..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:29:14 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 804..1606 | 11..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:29:14 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14619953..14620512 | 11..573 | 98 | -> | Plus |
3L | 14620578..14620755 | 574..751 | 100 | -> | Plus |
3L | 14620813..14620877 | 752..816 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:13:47 Download gff for
BO14296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14613053..14613612 | 11..573 | 98 | -> | Plus |
arm_3L | 14613678..14613855 | 574..751 | 100 | -> | Plus |
arm_3L | 14613913..14613977 | 752..816 | 96 | | Plus |
BO14296.complete Sequence
1333 bp assembled on 2006-10-11
GenBank Submission: FJ633079
> BO14296.complete
GAAGTTATCAGTCGACATGCCCTCCAATGTGCCAATAGTGCACCTGTACA
ATCGCGATGATCTGGAGAAGGTGCTGAAGTACCCCAGCAAATACCCATTC
CGACCTCCCACTGAGATCATCGTGATGTACCGTCAATCCCGACCGGATCG
CTATGCAAGTGTTGGAATTGTGAACGAGCAAGGACCAATGTGGCAGCGCC
TACGATCTTCCCTGACCTCCAGCATTACTTCTCCCAGGGTCCTGCAGAAT
TTCCTGCCAGCCTTGAATGCGGTTTGTGATGATTTTATCGAACTACTGCG
AGCCAGGCGGGATCCGGATACACTGGTGGTTCCCAATTTCGAAGAGCTGG
CCAATCTGATGGGTCTGGAAGCTGTGTGCACTTTAATGTTGGGCAGAAGG
ATGGGTTTCCTGGCTATCGATACCAAGCAGCCGCAAAAGATCAGCCAACT
GGCAGCTGCTGTTAAACAGCTTTTCATATCCCAAAGGGACTCGTACTACG
GTCTGGGTCTGTGGAAATACTTTCCCACCAAAACGTACAGAGACTTTGCC
CGCGCCGAGGACTTGATCTATGATGTGATCTCCGAGATCATCGATCATGA
GCTGGAGGAACTCAAAAAGTCGGCTGCCTGCGAGGATGACGAGGCTGCTG
GATTACGAAGTATCTTTCTGAATATTCTGGAGCTCAAGGATCTGGATATC
AGGGACAAAAAGTCAGCGATCATAGACTTTATTGCCGCTGGCATAGAAAC
GTTAGCCAACACTTTGTTGTTTGTACTGAGTTCTGTTACTGGAGATCCCG
GTGCTATGCCACGAATCCTAAGTGAATTCTGCGAGTATCGGGACACGAAT
ATCCTGCAGGATGCACTAACGAATGCCACATACACAAAGGCCTGTATACA
GGAGTCCTACAGACTGAGGCCCACAGCCTTTTGCCTGGCCAGAATCCTGG
AGGAGGACATGGAGCTCTCGGGCTACTCGCTTAATGCAGGGACTGTGGTG
CTCTGTCAGAATATGATAGCCTGCCACAAGGACAGCAACTTCCAAGGGGC
CAAGCAGTTTACCCCAGAGCGTTGGATTGATCCTGCCACGGAGAATTTCA
CGGTGAACGTGGATAATGCCAGTATTGTGGTGCCCTTCGGAGTGGGTCGA
AGATCGTGTCCAGGAAAGCGTTTTGTGGAAATGGAGGTGGTGCTGCTGCT
AGCTAAGATGGTCCTAGCCTTTGATGTGAGCTTTGTGAAGCCACTGGAAA
CGGAGTTCGAGTTCCTGCTGGCACCCAAAACTCCACTCAGTCTAAGACTC
AGCGATCGGGTTTTCGCAAGCTTTCTAGACCAT
BO14296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shd-RD | 1623 | CG13478-PD | 322..1620 | 17..1315 | 6405 | 99.5 | Plus |
shd-RC | 1302 | CG13478-PC | 1..1299 | 17..1315 | 6405 | 99.5 | Plus |
shd-RB | 1623 | CG13478-PB | 322..1620 | 17..1315 | 6405 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shd-RD | 2985 | CG13478-RD | 1062..2360 | 17..1315 | 6405 | 99.5 | Plus |
shd-RC | 1633 | CG13478-RC | 70..1368 | 17..1315 | 6405 | 99.5 | Plus |
shd-RB | 2730 | CG13478-RB | 807..2105 | 17..1315 | 6405 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14619956..14620512 | 17..573 | 2740 | 99.5 | Plus |
3L | 28110227 | 3L | 14620812..14621052 | 751..991 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 14621180..14621396 | 991..1207 | 1040 | 98.6 | Plus |
3L | 28110227 | 3L | 14620578..14620755 | 574..751 | 890 | 100 | Plus |
3L | 28110227 | 3L | 14621471..14621580 | 1206..1315 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:12:51 has no hits.
BO14296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:31 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 319..1623 | 11..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:33 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 319..1620 | 11..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:36 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 807..2105 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:31 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 319..1620 | 11..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:33 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shd-RB | 807..2105 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:33 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14620813..14621052 | 752..991 | 100 | -> | Plus |
3L | 14621181..14621396 | 992..1207 | 98 | -> | Plus |
3L | 14621473..14621580 | 1208..1317 | 98 | | Plus |
3L | 14619956..14620512 | 17..573 | 99 | -> | Plus |
3L | 14620578..14620755 | 574..751 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:36 Download gff for
BO14296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14613056..14613612 | 17..573 | 99 | -> | Plus |
arm_3L | 14613678..14613855 | 574..751 | 100 | -> | Plus |
arm_3L | 14613913..14614152 | 752..991 | 100 | -> | Plus |
arm_3L | 14614281..14614496 | 992..1207 | 98 | -> | Plus |
arm_3L | 14614573..14614680 | 1208..1317 | 98 | | Plus |
BO14296.pep Sequence
Translation from 16 to 1333
> BO14296.pep
MPSNVPIVHLYNRDDLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVG
IVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALNAVCDDFIELLRARRDP
DTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQPQKISQLAAAVK
QLFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELK
KSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTL
LFVLSSVTGDPGAMPRILSEFCEYRDTNILQDALTNATYTKACIQESYRL
RPTAFCLARILEEDMELSGYSLNAGTVVLCQNMIACHKDSNFQGAKQFTP
ERWIDPATENFTVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAKMVL
AFDVSFVKPLETEFEFLLAPKTPLSLRLSDRVFASFLDH
BO14296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shd-PD | 540 | CG13478-PD | 108..540 | 1..433 | 2219 | 100 | Plus |
shd-PC | 433 | CG13478-PC | 1..433 | 1..433 | 2219 | 100 | Plus |
shd-PB | 540 | CG13478-PB | 108..540 | 1..433 | 2219 | 100 | Plus |
Cyp12a5-PA | 536 | CG11821-PA | 100..533 | 7..430 | 457 | 28.6 | Plus |
Cyp12a4-PA | 536 | CG6042-PA | 97..533 | 4..430 | 452 | 29.1 | Plus |