Clone Sequence Records
BO14301.3prime Sequence
392 bp (391 high quality bases) assembled on 2006-05-29
> BO14301.3prime
ATGGTCTAGAAAGCTTGCCTGCCGTCCATAGACGTTCTCATCGGTATAGG
AAATGTAGAGGAAGTAGTCCTTGTCGAAGTGCTCCTGGTACAGTGCACCC
ATGGTGGCCGATGTCGGTGGGATCACATTGTTTACGAAGAAGAAGAGGGC
GTCGTCGGGACGCAGATTGATACGCTTGCGGATGAGAAAGTAGAACTGGC
CCACTGTCAGGTCCGCCGGCACCAGGTACTTCTTCTTGTCCAGCTCCGCG
TAACGCGTCTTCGGCGCCTTTTCCACGATGACGGGCACACGGTCCGGATA
CTTGCGCCGGATCTTGTCGCCTTCGTTGCGGCGCTTGTCGAACGAGTGGT
CCTTCTTGTACTGGTAGTTCATATCCATGTCGACTGATAACT
BO14301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12334-PA | 363 | Atg8b-RA | 1..360 | 378..19 | 1800 | 100 | Minus |
CG32672-PA | 366 | Atg8a-RA | 52..98 | 321..275 | 160 | 93.6 | Minus |
CG32672-PA | 366 | Atg8a-RA | 175..275 | 198..98 | 155 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..513 | 378..19 | 1800 | 100 | Minus |
Atg8b-RA | 609 | CG12334-RA | 135..494 | 378..19 | 1800 | 100 | Minus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 372..35 | 775 | 82 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724551..17724910 | 19..378 | 1800 | 100 | Plus |
X | 23542271 | X | 10765604..10765802 | 84..282 | 470 | 82.4 | Plus |
X | 23542271 | X | 10767979..10768070 | 281..372 | 235 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:43:26 has no hits.
BO14301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:43 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-PA | 1..363 | 18..378 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:55 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12334-PA | 1..363 | 18..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:56:25 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 19..387 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:02 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 19..387 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:02 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724551..17724919 | 19..387 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:56:25 Download gff for
BO14301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550273..13550641 | 19..387 | 98 | | Plus |
BO14301.5prime Sequence
392 bp (391 high quality bases) assembled on 2006-05-29
> BO14301.5prime
GAAGTTATCAGTCGACATGGATATGAACTACCAGTACAAGAAGGACCACT
CGTTCGACAAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCG
GACCGTGTGCCCGTCATCGTGGAAAAGGCGCCGAAGACGCGTTACGCGGA
GCTGGACAAGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGT
TCTACTTTCTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTC
TTCTTCTTCGTAAACAATGTGATCCCACCGACATCGGCCACCATGGGTGC
ACTGTACCAGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATA
CCGATGAGAACGTCTATGGACGGCAGGCAAGCTTTCTAGACC
BO14301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12334-PA | 363 | Atg8b-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
CG32672-PA | 366 | Atg8a-RA | 52..98 | 74..120 | 160 | 93.6 | Plus |
CG32672-PA | 366 | Atg8a-RA | 175..275 | 197..297 | 155 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..513 | 17..376 | 1800 | 100 | Plus |
Atg8b-RA | 609 | CG12334-RA | 135..494 | 17..376 | 1800 | 100 | Plus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 23..360 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724551..17724910 | 376..17 | 1800 | 100 | Minus |
X | 23542271 | X | 10765604..10765802 | 311..113 | 470 | 82.4 | Minus |
X | 23542271 | X | 10767979..10768070 | 114..23 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:01 has no hits.
BO14301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:44 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-PA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:56 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12334-PA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:14 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 8..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:07 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 8..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:07 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724551..17724919 | 8..376 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:14 Download gff for
BO14301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550273..13550641 | 8..376 | 98 | | Minus |
BO14301.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ633080
> BO14301.complete
GAAGTTATCAGTCGACATGGATATGAACTACCAGTACAAGAAGGACCACT
CGTTCGACAAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCG
GACCGTGTGCCCGTCATCGTGGAAAAGGCGCCGAAGACGCGTTACGCGGA
GCTGGACAAGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGT
TCTACTTTCTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTC
TTCTTCTTCGTAAACAATGTGATCCCACCGACATCGGCCACCATGGGTGC
ACTGTACCAGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATA
CCGATGAGAACGTCTATGGACGGCAGGCAAGCTTTCTAGACCAT
BO14301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 363 | CG12334-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
Atg8b-RA | 363 | CG12334-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Atg8a-RA | 366 | CG32672-PA | 1..338 | 23..360 | 775 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..513 | 17..376 | 1800 | 100 | Plus |
Atg8b-RA | 609 | CG12334-RA | 135..494 | 17..376 | 1800 | 100 | Plus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 23..360 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724551..17724910 | 376..17 | 1800 | 100 | Minus |
X | 23542271 | X | 10765604..10765802 | 311..113 | 470 | 82.4 | Minus |
X | 23542271 | X | 10767979..10768070 | 114..23 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:14:21 has no hits.
BO14301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:03 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:46 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 8..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:38 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 135..494 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:03 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..494 | 8..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:24 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 135..494 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:24 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724549..17724910 | 17..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:38 Download gff for
BO14301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550271..13550632 | 17..378 | 99 | | Minus |
BO14301.pep Sequence
Translation from 16 to 394
> BO14301.pep
MDMNYQYKKDHSFDKRRNEGDKIRRKYPDRVPVIVEKAPKTRYAELDKKK
YLVPADLTVGQFYFLIRKRINLRPDDALFFFVNNVIPPTSATMGALYQEH
FDKDYFLYISYTDENVYGRQASFLDH
BO14301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-PB | 120 | CG12334-PB | 1..120 | 1..120 | 641 | 100 | Plus |
Atg8b-PA | 120 | CG12334-PA | 1..120 | 1..120 | 641 | 100 | Plus |
Atg8a-PA | 121 | CG32672-PA | 1..116 | 3..118 | 530 | 82.8 | Plus |
Atg8a-PC | 107 | CG32672-PC | 7..102 | 23..118 | 401 | 78.1 | Plus |
Atg8a-PB | 96 | CG32672-PB | 6..91 | 33..118 | 395 | 84.9 | Plus |